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Volumn 61, Issue 1, 2013, Pages 27-36

Isolation and characterization of a single-stranded RNA virus that infects the marine planktonic diatom Chaetoceros sp. (SS08-C03)

Author keywords

Bacillarnavirus; Chaetoceros; Diatom; SsRNA; Virus

Indexed keywords

CYTOPLASM; DIATOM; GENOME; INFECTIOUS DISEASE; MORPHOLOGY; MORTALITY; PHILOSOPHY; PHYLOGENETICS; PRIMARY PRODUCTION; RNA; VIRUS;

EID: 84872797608     PISSN: 13220829     EISSN: 14401835     Source Type: Journal    
DOI: 10.1111/j.1440-1835.2012.00670.x     Document Type: Article
Times cited : (27)

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