Dynamics of diatom viruses on the western coast of Japan

Aquatic Microbial Ecology

Volumn 63, Issue 3, 2011, Pages 223-230

  Tomaru, Yuji ^a   Fujii, Naoki ^b   Oda, Shigeyuki ^b   Toyoda, Kensuke ^a,c   Nagasaki, Keizo ^a  

^a FISHERIES RESEARCH AGENCY   (Japan)

^b Fukuoka Fisheries and Marine Technology Research Center   (Japan)

^c KEIO UNIVERSITY   (Japan)

Author keywords

Bloom; Chaetoceros; Diatom; Population dynamics; Sediment; Survival strategy; Virus

Indexed keywords

BACILLARIOPHYTA; CHAETOCEROS; CHAETOCEROS DEBILIS; CHAETOCEROS SALSUGINEUM;

EID: 79956293296     PISSN: 09483055     EISSN: None     Source Type: Journal    
DOI: 10.3354/ame01496     Document Type: Article

References (26)

1. Bettarel Y, Kan J, Wang K, Williamson K and others (2005) Isolation and preliminary characterisation of a small nuclear inclusion virus infecting the diatom Chaetoceros cf. gracilis. Aquat Microb Ecol 40:103-114 (Pubitemid 41414977)
2. Brussaard CPD, Kempers RS, Kop AJ, Riegman R, Heldal M (1996) Virus-like particles in a summer bloom of Emiliania huxleyi in the North Sea. Aquat Microb Ecol 10:105-113 (Pubitemid 126467205)
3. Chen LCM, Edelstein T, McLachlan J (1969) Bonnemaisonia hamifera Hariot in nature and in culture. J Phycol 5:211-220
4. Eissler Y, Wang K, Chen F, Wommack E, Coats W (2009) Ultrastructural characterization of the lytic cycle of an intranuclear virus infecting the diatom Chaetoceros cf. wighamii (Bacillariophyceae) from Chesapeake Bay, USA. J Phycol 45:787-797
5. Imai I, Itakura S (1999) Importance of cysts in the population dynamics of the red tide flagellate Heterosigma akashiwo (Raphidophyceae). Mar Biol 133:755-762 (Pubitemid 29252963)
6. Itoh K, Imai I (1987) Rafido so (Raphidophyceae). In: Japan Fisheries Resource Conservation Association (ed) A guide for studies of red tide organisms. Shuwa, Tokyo, p 122-130 (in Japanese)
7. Lawrence JE, Suttle CA (2004) Effect of viral infection on sinking rates of Heterosigma akashiwo and its implications for bloom termination. Aquat Microb Ecol 37:1-7 (Pubitemid 39588455)
8. Nagasaki K, Tomaru Y, Katanozaka N, Shirai Y, Nishida K, Itakura S, Yamaguchi M (2004a) Isolation and characterization of a novel single-stranded RNA virus infecting the bloom-forming diatom Rhizosolenia setigera. Appl Environ Microbiol 70:704-711 (Pubitemid 38568191)
9. Nagasaki K, Tomaru Y, Nakanishi K, Katanozaka N, Yamaguchi M (2004b) Dynamics of Heterocapsa circularisquama (Dinophyceae) and its viruses in Ago Bay, Japan. Aquat Microb Ecol 34:219-226 (Pubitemid 39098816)
10. Nagasaki K, Tomaru Y, Takao Y, Nishida K, Shirai Y, Suzuki H, Nagumo T (2005) Previously unknown virus infects marine diatom. Appl Environ Microbiol 71:3528-3535 (Pubitemid 40980517)
11. Nishihara T, Kurano N, Shinoda S (1986) Calculation of most probable number for enumeration of bacteria on a microcomputer. Eisei Kagaku 32:226-228 (in Japanese)
12. Proctor LM, Fuhrman JA (1991) Roles of viral infection in organic particle flux. Mar Ecol Prog Ser 69:133-142
13. Raven JA, Waite AM (2004) The evolution of silicification in diatoms: inescapable sinking and sinking as escape? New Phytol 162:45-61 (Pubitemid 38414188)
14. Schroeder DC, Oke J, Hall M, Malin G, Wilson WH (2003) Virus succession observed during an Emiliania huxleyi bloom. Appl Environ Microbiol 69:2484-2490 (Pubitemid 36560320)
15. Shirai Y, Tomaru Y, Takao Y, Suzuki H, Nagumo T, Nagasaki K (2008) Isolation and characterization of a single-stranded RNA virus infecting the marine planktonic diatom Chaetoceros tenuissimus Meunier. Appl Environ Microbiol 74:4022-4027 (Pubitemid 351962427)
16. Suttle CA (1993) Enumeration and isolation of viruses. In: Kemp PF, Sherr BF, Sherr EB, Cole JJ (eds) Handbook of methods in aquatic microbial ecology. Lewis Publishers, Boca Raton, FL, p 121-134
17. Suttle CA, Chan AM (1994) Dynamics and distribution of cyanophages and their effect on marine Synechococcus spp. Appl Environ Microbiol 60:3167-3174 (Pubitemid 24272340)
18. Takano H (1990) Chaetoceros debile Cleve. In: Fukuyo Y, Takano H, Chihara H, Matsuoka K (eds) Red tide organisms in Japan: an illustrated taxonomic guide. Uchida Rokakuho, Tokyo, p 286-287
19. Tomaru Y, Tarutani K, Yamaguchi M, Nagasaki K (2004) Quantitative and qualitative impacts of viral infection on a Heterosigma akashiwo (Raphidophyceae) bloom in Hiroshima Bay, Japan. Aquat Microb Ecol 34:227-238 (Pubitemid 39098817)
20. Tomaru Y, Shirai Y, Nagasaki K (2008a) Ecology, physiology and genetics of a phycodna virus infecting the noxious bloom-forming raphidophyte Heterosigma akashiwo. Fish Sci 74:701-711
21. Tomaru Y, Shirai Y, Suzuki H, Nagumo T, Nagasaki K (2008b) Isolation and characterization of a new single-stranded DNA virus infecting the cosmopolitan marine diatom Chaetoceros debilis. Aquat Microb Ecol 50:103-112 (Pubitemid 351300189)
22. Tomaru Y, Takao Y, Suzuki H, Nagumo T, Nagasaki K (2009) Isolation and characterization of a single-stranded RNA virus infecting the bloom-forming diatom Chaetoceros socialis. Appl Environ Microbiol 75:2375-2381
23. Toyoda K, Nagasaki K, Tomaru Y (2010) Application of realtime PCR assay for detection and quantification of bloomforming diatom Chaetoceros tenuissimus Meunier. Plankton Benthos Res 5:56-61
24. Waite A, Thompson PA, Harrison PJ (1992) Does energy control the sinking rates of marine diatoms? Limnol Oceanogr 37:468-477 (Pubitemid 23401183)
25. Wommack KE, Colwell RR (2000) Virioplankton: viruses in aquatic ecosystems. Microbiol Mol Biol Rev 64:69-114 (Pubitemid 30143841)
26. Yokoyama H, Tamaki A, Koyama K, Ishihi Y, Shimoda K, Harada K (2005) Isotopic evidence for phytoplankton as a major food source for macrobenthos on an intertidal sandflat in Ariake Sound, Japan. Mar Ecol Prog Ser 304:101-116 (Pubitemid 43096927)