-
1
-
-
15544382565
-
Immunity, inflammation, and allergy in the gut
-
DOI 10.1126/science.1106442
-
MacDonald, T. T.; Monteleone, G. Immunity, inflammation, and allergy in the gut. Science 2005, 307, 1920-1925. (Pubitemid 40404695)
-
(2005)
Science
, vol.307
, Issue.5717
, pp. 1920-1925
-
-
MacDonald, T.T.1
Monteleone, G.2
-
2
-
-
79955552936
-
Interactions between the host innate immune system and microbes in inflammatory bowel disease
-
Abraham, C.; Medzhitov, R. Interactions between the host innate immune system and microbes in inflammatory bowel disease. Gastroenterology 2011, 140, 1729-1737.
-
(2011)
Gastroenterology
, vol.140
, pp. 1729-1737
-
-
Abraham, C.1
Medzhitov, R.2
-
3
-
-
33845866857
-
Inflammation and metabolic disorders
-
DOI 10.1038/nature05485, PII NATURE05485
-
Hotamisligil, G. S. Inflammation and metabolic disorders. Nature 2006, 444, 860-867. (Pubitemid 46024993)
-
(2006)
Nature
, vol.444
, Issue.7121
, pp. 860-867
-
-
Hotamisligil, G.S.1
-
4
-
-
34249977081
-
Pathophysiology of Inflammatory Bowel Disease: An Overview
-
DOI 10.1016/j.suc.2007.03.001, PII S0039610907000229, Current Management of Inflammatory Bowel Disease
-
Thoreson, R.; Cullen, J. J. Pathophysiology of inflammatory bowel disease: an overview. Surg. Clin. North Am. 2007, 87, 575-585. (Pubitemid 46881077)
-
(2007)
Surgical Clinics of North America
, vol.87
, Issue.3
, pp. 575-585
-
-
Thoreson, R.1
Cullen, J.J.2
-
5
-
-
84866549438
-
Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment
-
1186
-
Morgan, X. C.; Tickle, T. L.; Sokol, H.; Gevers, D.; Devaney, K. L.; Ward, D. V.; Reyes, J. A.; Shah, S. A.; LeLeiko, N.; Snapper, S. B.; Bousvaros, A.; Korzenik, J.; Sands, B. E.; Xavier, R. J.; Huttenhower, C. Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment. Genome Biol. 1186, 13, R79.
-
Genome Biol.
, vol.13
-
-
Morgan, X.C.1
Tickle, T.L.2
Sokol, H.3
Gevers, D.4
Devaney, K.L.5
Ward, D.V.6
Reyes, J.A.7
Shah, S.A.8
LeLeiko, N.9
Snapper, S.B.10
Bousvaros, A.11
Korzenik, J.12
Sands, B.E.13
Xavier, R.J.14
Huttenhower, C.15
-
6
-
-
77649155224
-
Immunogenic yeast-based fermentate for cold/flu-like symptoms in nonvaccinated individuals
-
Moyad, M. A.; Robinson, L. E.; Zawada, E. T.; Kittelsrud, J.; Chen, D. G.; Reeves, S. G.; Weaver, S. Immunogenic yeast-based fermentate for cold/flu-like symptoms in nonvaccinated individuals. J. Altern. Complement. Med. 2010, 16, 213-218.
-
(2010)
J. Altern. Complement. Med.
, vol.16
, pp. 213-218
-
-
Moyad, M.A.1
Robinson, L.E.2
Zawada, E.T.3
Kittelsrud, J.4
Chen, D.G.5
Reeves, S.G.6
Weaver, S.7
-
7
-
-
73449105384
-
Immunogenic yeast-based fermentation product reduces allergic rhinitis-induced nasal congestion: A randomized, double-blind, placebo-controlled trial
-
Moyad, M. A.; Robinson, L. E.; Kittelsrud, J. M.; Reeves, S. G.; Weaver, S. E.; Guzman, A. I.; Bubak, M. E. Immunogenic yeast-based fermentation product reduces allergic rhinitis-induced nasal congestion: a randomized, double-blind, placebo-controlled trial. Adv. Ther. 2009, 26, 795-804.
-
(2009)
Adv. Ther.
, vol.26
, pp. 795-804
-
-
Moyad, M.A.1
Robinson, L.E.2
Kittelsrud, J.M.3
Reeves, S.G.4
Weaver, S.E.5
Guzman, A.I.6
Bubak, M.E.7
-
8
-
-
73449101525
-
A double-blind placebo-controlled, randomized pilot study: Consumption of a high-metabolite immunogen from yeast culture has beneficial effects on erythrocyte health and mucosal immune protection in healthy subjects
-
Jensen, G. S.; Patterson, K. M.; Barnes, J.; Schauss, A. G.; Beaman, R.; Reeves, S. G.; Robinson, L. E. A double-blind placebo-controlled, randomized pilot study: consumption of a high-metabolite immunogen from yeast culture has beneficial effects on erythrocyte health and mucosal immune protection in healthy subjects. Open Nut. J. 2008, 2, 68-75.
-
(2008)
Open Nut. J.
, vol.2
, pp. 68-75
-
-
Jensen, G.S.1
Patterson, K.M.2
Barnes, J.3
Schauss, A.G.4
Beaman, R.5
Reeves, S.G.6
Robinson, L.E.7
-
9
-
-
34250705805
-
An antiinflammatory immunogen from yeast culture induces activation and alters chemokine receptor expression on human natural killer cells and B lymphocytes in vitro
-
DOI 10.1016/j.nutres.2007.04.008, PII S0271531707000978
-
Jensen, G. S.; Hart, A. N.; Schauss, A. G. An antiinflammatory immunogen from yeast culture induces activation and alters chemokine receptor expression on human natural killer cells and B lymphocytes in vitro. Nutr. Res. (N.Y.) 2007, 27, 327-335. (Pubitemid 46962176)
-
(2007)
Nutrition Research
, vol.27
, Issue.6
, pp. 327-335
-
-
Jensen, G.S.1
Hart, A.N.2
Schauss, A.G.3
-
10
-
-
46249094448
-
Yeast culture has antiinflammatory effects and specifically activates NK cells
-
Jensen, G. S.; Patterson, K. M.; Yoon, I. Yeast culture has antiinflammatory effects and specifically activates NK cells. Comp. Immunol. Microbiol. Infect. Dis. 2008, 31, 487-500.
-
(2008)
Comp. Immunol. Microbiol. Infect. Dis.
, vol.31
, pp. 487-500
-
-
Jensen, G.S.1
Patterson, K.M.2
Yoon, I.3
-
11
-
-
78951477258
-
Brewer's yeast cell wall affects microbiota composition and decreases Bacteroides fragilis populations in an anaerobic gut intestinal model
-
Nakashimada, Y.; Michinaka, A.; Watanabe, K.; Nishio, N.; Fujii, T. Brewer's yeast cell wall affects microbiota composition and decreases Bacteroides fragilis populations in an anaerobic gut intestinal model. J. Biosci. Bioeng. 2011, 111, 178-184.
-
(2011)
J. Biosci. Bioeng.
, vol.111
, pp. 178-184
-
-
Nakashimada, Y.1
Michinaka, A.2
Watanabe, K.3
Nishio, N.4
Fujii, T.5
-
12
-
-
78649645952
-
Use of Saccharomyces cerevisiae fermentation product on growth performance and microbiota of weaned pigs during Salmonella infection
-
Price, K. L.; Totty, H. R.; Lee, H. B.; Utt, M. D.; Fitzner, G. E.; Yoon, I.; Ponder, M. A.; Escobar, J. Use of Saccharomyces cerevisiae fermentation product on growth performance and microbiota of weaned pigs during Salmonella infection. J. Anim. Sci. 2010, 88, 3896-3908.
-
(2010)
J. Anim. Sci.
, vol.88
, pp. 3896-3908
-
-
Price, K.L.1
Totty, H.R.2
Lee, H.B.3
Utt, M.D.4
Fitzner, G.E.5
Yoon, I.6
Ponder, M.A.7
Escobar, J.8
-
13
-
-
77952242747
-
The use of the SHIME-related technology platform to assess the efficacy of pre- and probiotics
-
Marzorati, M.; Possemiers, S.; Verstraete, W. The use of the SHIME-related technology platform to assess the efficacy of pre- and probiotics. AgroFood Ind. Hi-Tech 2009, 20, 50-53.
-
(2009)
AgroFood Ind. Hi-Tech
, vol.20
, pp. 50-53
-
-
Marzorati, M.1
Possemiers, S.2
Verstraete, W.3
-
14
-
-
75749143398
-
Intestinal epithelial cells in vitro
-
Chopra, D. P.; Dombkowski, A. A.; Stemmer, P. M.; Parker, G. C. Intestinal epithelial cells in vitro. Stem Cells Dev. 2010, 19, 131-141.
-
(2010)
Stem Cells Dev.
, vol.19
, pp. 131-141
-
-
Chopra, D.P.1
Dombkowski, A.A.2
Stemmer, P.M.3
Parker, G.C.4
-
15
-
-
77953536656
-
Bacteria and chocolate: A successful combination for probiotic delivery
-
Possemiers, S.; Marzorati, M.; Verstraete, W.; Van de Wiele, T. Bacteria and chocolate: a successful combination for probiotic delivery. Int. J. Food Microbiol. 2010, 141, 97-103.
-
(2010)
Int. J. Food Microbiol.
, vol.141
, pp. 97-103
-
-
Possemiers, S.1
Marzorati, M.2
Verstraete, W.3
Van De Wiele, T.4
-
16
-
-
10644253779
-
Prebiotic effects of chicory inulin in the simulator of the human intestinal microbial ecosystem
-
DOI 10.1016/j.femsec.2004.07.014, PII S0168649604002387
-
Van de Wiele, T.; Boon, N.; Possemiers, S.; Jacobs, H.; Verstraete, W. Prebiotic effects of chicory inulin in the simulator of the human intestinal microbial ecosystem. FEMS Microbiol. Ecol. 2004, 51, 143-153. (Pubitemid 39647647)
-
(2004)
FEMS Microbiology Ecology
, vol.51
, Issue.1
, pp. 143-153
-
-
De Wiele, T.V.1
Boon, N.2
Possemiers, S.3
Jacobs, H.4
Verstraete, W.5
-
17
-
-
79958056338
-
The host selects mucosal and luminal associations of coevolved gut microorganisms: A novel concept
-
Van den Abbeele, P.; Van de Wiele, T.; Verstraete, W.; Possemiers, S. The host selects mucosal and luminal associations of coevolved gut microorganisms: a novel concept. FEMS Microbiol. Rev. 2011, 35, 681-784.
-
(2011)
FEMS Microbiol. Rev.
, vol.35
, pp. 681-784
-
-
Van Den Abbeele, P.1
Van De Wiele, T.2
Verstraete, W.3
Possemiers, S.4
-
18
-
-
0027251567
-
Development of a 5-step multi-chamber reactor as a simulation of the human intestinal microbial ecosystem
-
Molly, K.; Woestyne, M. V.; Verstraete, W. Development of a 5-step multichamber reactor as a Simulation of the Human Intestinal Microbial Ecosystem. Appl. Microbiol. Biotechnol. 1993, 39, 254-258. (Pubitemid 23134616)
-
(1993)
Applied Microbiology and Biotechnology
, vol.39
, Issue.2
, pp. 254-258
-
-
Molly, K.1
Vande, W.M.2
Verstraete, W.3
-
19
-
-
4344645434
-
PCR-DGGE-based quantification of stability of the microbial community in a simulator of the human intestinal microbial ecosystem
-
DOI 10.1016/j.femsec.2004.05.002, PII S0168649604001606
-
Possemiers, S.; Verthe, K.; Uyttendaele, S.; Verstraete, W. PCR-DGGE-based quantification of stability of the microbial community in a Simulator of the Human Intestinal Microbial Ecosystem. FEMS Microbiol. Ecol. 2004, 49, 495-507. (Pubitemid 39119606)
-
(2004)
FEMS Microbiology Ecology
, vol.49
, Issue.3
, pp. 495-507
-
-
Possemiers, S.1
Verthe, K.2
Uyttendaele, S.3
Verstraete, W.4
-
20
-
-
67349106144
-
In vitro model to study the modulation of the mucin-adhered bacterial community
-
Van den Abbeele, P.; Grootaert, C.; Possemiers, S.; Verstraete, W.; Verbeken, K.; Van de Wiele, T. In vitro model to study the modulation of the mucin-adhered bacterial community. Appl. Microbiol. Biotechnol. 2009, 83, 349-359.
-
(2009)
Appl. Microbiol. Biotechnol.
, vol.83
, pp. 349-359
-
-
Van Den Abbeele, P.1
Grootaert, C.2
Possemiers, S.3
Verstraete, W.4
Verbeken, K.5
Van De Wiele, T.6
-
21
-
-
34447532076
-
Metabolism of isoflavones, lignans and prenylflavonoids by intestinal bacteria: Producer phenotyping and relation with intestinal community
-
DOI 10.1111/j.1574-6941.2007.00330.x
-
Possemiers, S.; Bolca, S.; Eeckhaut, E.; Depypere, H.; Verstraete, W. Metabolism of isoflavones, lignans and prenylflavonoids by intestinal bacteria: producer phenotyping and relation with intestinal community. FEMS Microbiol. Ecol. 2007, 61, 372-383. (Pubitemid 47083930)
-
(2007)
FEMS Microbiology Ecology
, vol.61
, Issue.2
, pp. 372-383
-
-
Possemiers, S.1
Bolca, S.2
Eeckhaut, E.3
Depypere, H.4
Verstraete, W.5
-
22
-
-
1642546332
-
Colonic metabolism of dietary polyphenols: Influence of structure on microbial fermentation products
-
DOI 10.1016/j.freeradbiomed.2003.09.022
-
Rechner, A. R.; Smith, M. A.; Kuhnle, G.; Gibson, G. R.; Debnam, E. S.; Srai, S. K. S.; Moore, K. P.; Rice-Evans, C. A. Colonic metabolism of dietary polyphenols: Influence of structure on microbial fermentation products. Free Radical Biol. Med. 2004, 36, 212-225. (Pubitemid 38117239)
-
(2004)
Free Radical Biology and Medicine
, vol.36
, Issue.2
, pp. 212-225
-
-
Rechner, A.R.1
Smith, M.A.2
Kuhnle, G.3
Gibson, G.R.4
Debnam, E.S.5
Srai, S.K.S.6
Moore, K.P.7
Rice-Evans, C.A.8
-
23
-
-
77949655057
-
Arabinoxylan-oligosaccharides (AXOS) affect the protein/carbohydrate fermentation balance and microbial population dynamics of the simulator of human intestinal microbial ecosystem
-
Sanchez, J. I.; Marzorati, M.; Grootaert, C.; Baran, M.; Van Craeyveld, V.; Courtin, C. M.; Broekaert, W. F.; Delcour, J. A.; Verstraete, W.; Van de Wiele, T. Arabinoxylan-oligosaccharides (AXOS) affect the protein/carbohydrate fermentation balance and microbial population dynamics of the simulator of human intestinal microbial ecosystem. Microb. Biotechnol. 2009, 2, 103-113.
-
(2009)
Microb. Biotechnol.
, vol.2
, pp. 103-113
-
-
Sanchez, J.I.1
Marzorati, M.2
Grootaert, C.3
Baran, M.4
Van Craeyveld, V.5
Courtin, C.M.6
Broekaert, W.F.7
Delcour, J.A.8
Verstraete, W.9
Van De Wiele, T.10
-
24
-
-
0030840069
-
LAMVAB - A new selective medium for the isolation of lactobacilli from faeces
-
DOI 10.1016/S0167-7012(97)00025-0, PII S0167701297000250
-
Hartemink, R.; Domenech, V. R.; Rombouts, F. M. LAMVAB - a new selective medium for the isolation of lactobacilli from faeces. J. Microbiol. Methods 1997, 29, 77-84. (Pubitemid 27319830)
-
(1997)
Journal of Microbiological Methods
, vol.29
, Issue.2
, pp. 77-84
-
-
Hartemink, R.1
Domenech, V.R.2
Rombouts, F.M.3
-
25
-
-
0030250786
-
Raffinose-Bifidobacterium (RB) agar, a new selective medium for bifidobacteria
-
DOI 10.1016/0167-7012(96)00926-8, PII S0167701296009268
-
Hartemink, R.; Kok, B. J.; Weenk, G. H.; Rombouts, F. M. Raffinose-Bifidobacterium (RB) agar, a new selective medium for bifidobacteria. J. Microbiol. Methods 1996, 27, 33-43. (Pubitemid 26375862)
-
(1996)
Journal of Microbiological Methods
, vol.27
, Issue.1
, pp. 33-43
-
-
Hartemink, R.1
Kok, B.J.2
Weenk, G.H.3
Rombouts, F.M.4
-
26
-
-
0037337331
-
Bioaugmentation as a tool to protect the structure and function of an activated-sludge microbial community against a 3-chloroaniline shock load
-
DOI 10.1128/AEM.69.3.1511-1520.2003
-
Boon, N.; Top, E. M.; Verstraete, W.; Siciliano, S. D. Bioaugmentation as a tool to protect the structure and function of an activated sludge microbial community against a 3-chloroaniline shock load. Appl. Environ. Microbiol. 2003, 69, 1511-1520. (Pubitemid 36314289)
-
(2003)
Applied and Environmental Microbiology
, vol.69
, Issue.3
, pp. 1511-1520
-
-
Boon, N.1
Top, E.M.2
Verstraete, W.3
Siciliano, S.D.4
-
27
-
-
65249099918
-
Changes in gut microbiota control inflammation in obese mice through a mechanism involving GLP-2-driven improvement of gut permeability
-
Cani, P. D.; Possemiers, S.; Van de Wiele, T.; Guiot, Y.; Everard, A.; Rottier, O.; Geurts, L.; Naslain, D.; Neyrinck, A.; Lambert, D. M.; Muccioli, G. G.; Delzenne, N. M. Changes in gut microbiota control inflammation in obese mice through a mechanism involving GLP-2-driven improvement of gut permeability. Gut 2009, 58, 1091-1103.
-
(2009)
Gut
, vol.58
, pp. 1091-1103
-
-
Cani, P.D.1
Possemiers, S.2
Van De Wiele, T.3
Guiot, Y.4
Everard, A.5
Rottier, O.6
Geurts, L.7
Naslain, D.8
Neyrinck, A.9
Lambert, D.M.10
Muccioli, G.G.11
Delzenne, N.M.12
-
28
-
-
50949131523
-
Comparative analysis of human gut microbiota by barcoded pyrosequencing
-
Andersson, A. F.; Lindberg, M.; Jakobsson, H.; Backhed, F.; Nyren, P.; Engstrand, L. Comparative analysis of human gut microbiota by barcoded pyrosequencing. PLoS One 2008, 3, e2836.
-
(2008)
PLoS One
, vol.3
-
-
Andersson, A.F.1
Lindberg, M.2
Jakobsson, H.3
Backhed, F.4
Nyren, P.5
Engstrand, L.6
-
29
-
-
77957075815
-
Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
-
De Filippo, C.; Cavalieri, D.; Di Paola, M.; Ramazzotti, M.; Poullet, J. B.; Massart, S.; Collini, S.; Pieraccini, G.; Lionetti, P. Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 14691-14696.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 14691-14696
-
-
De Filippo, C.1
Cavalieri, D.2
Di Paola, M.3
Ramazzotti, M.4
Poullet, J.B.5
Massart, S.6
Collini, S.7
Pieraccini, G.8
Lionetti, P.9
-
30
-
-
84876189585
-
Barcoded pyrosequencing analysis of the microbial community in a simulator of the human gastrointestinal tract showed a colon region- specific microbiota modulation for two plant-derived polysaccharide blends
-
Marzorati, M.; Maignien, L.; Verhelst, A.; Luta, G.; Sinnott, R.; Kerckhof, F. M.; Boon, N.; Van de Wiele, T.; Possemiers, S. Barcoded pyrosequencing analysis of the microbial community in a simulator of the human gastrointestinal tract showed a colon region- specific microbiota modulation for two plant-derived polysaccharide blends. Antonie van Leeuwenhoek Int. J. Gen. Mol. Microbiol. 2013, 103, 409-420.
-
(2013)
Antonie Van Leeuwenhoek Int. J. Gen. Mol. Microbiol.
, vol.103
, pp. 409-420
-
-
Marzorati, M.1
Maignien, L.2
Verhelst, A.3
Luta, G.4
Sinnott, R.5
Kerckhof, F.M.6
Boon, N.7
Van De Wiele, T.8
Possemiers, S.9
-
31
-
-
72949107142
-
Introducing Mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss, P. D.; Westcott, S. L.; Ryabin, T.; Hall, J. R.; Hartmann, M.; Hollister, E. B.; Lesniewski, R. A.; Oakley, B. B.; Parks, D. H.; Robinson, C. J.; Sahl, J. W.; Stres, B.; Thallinger, G. G.; Van Horn, D. J.; Weber, C. F. Introducing Mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 2009, 75, 7537-7541.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
Sahl, J.W.11
Stres, B.12
Thallinger, G.G.13
Van Horn, D.J.14
Weber, C.F.15
-
32
-
-
77955251092
-
Ironing out the wrinkles in the rare biosphere through improved OTU clustering
-
Huse, S. M.; Welch, D. M.; Morrison, H. G.; Sogin, M. L. Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environ. Microbiol. 2010, 12, 1889-1898.
-
(2010)
Environ. Microbiol.
, vol.12
, pp. 1889-1898
-
-
Huse, S.M.1
Welch, D.M.2
Morrison, H.G.3
Sogin, M.L.4
-
33
-
-
79952006773
-
Human Microbiome, C., Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
-
Haas, B. J.; Gevers, D.; Earl, A. M.; Feldgarden, M.; Ward, D. V.; Giannoukos, G.; Ciulla, D.; Tabbaa, D.; Highlander, S. K.; Sodergren, E.; Methe, B.; DeSantis, T. Z.; Petrosino, J. F.; Knight, R.; Birren, B. W. Human Microbiome, C., Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res. 2011, 21, 494-504.
-
(2011)
Genome Res.
, vol.21
, pp. 494-504
-
-
Haas, B.J.1
Gevers, D.2
Earl, A.M.3
Feldgarden, M.4
Ward, D.V.5
Giannoukos, G.6
Ciulla, D.7
Tabbaa, D.8
Highlander, S.K.9
Sodergren, E.10
Methe, B.11
DeSantis, T.Z.12
Petrosino, J.F.13
Knight, R.14
Birren, B.W.15
-
34
-
-
84856563821
-
Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes
-
Gihring, T. M.; Green, S. J.; Schadt, C. W. Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes. Environ. Microbiol. 2012, 14, 285-290.
-
(2012)
Environ. Microbiol.
, vol.14
, pp. 285-290
-
-
Gihring, T.M.1
Green, S.J.2
Schadt, C.W.3
-
35
-
-
33744914841
-
Relaxed neighbor joining: A fast distance-based phylogenetic tree construction method
-
DOI 10.1007/s00239-005-0176-2
-
Evans, J.; Sheneman, L.; Foster, J. Relaxed neighbor joining: a fast distance-based phylogenetic tree construction method. J. Mol. Evol. 2006, 62, 785-792. (Pubitemid 43847228)
-
(2006)
Journal of Molecular Evolution
, vol.62
, Issue.6
, pp. 785-792
-
-
Evans, J.1
Sheneman, L.2
Foster, J.3
-
36
-
-
33750983947
-
Clearcut: A fast implementation of relaxed neighbor joining
-
DOI 10.1093/bioinformatics/btl478
-
Sheneman, L.; Evans, J.; Foster, J. A. Clearcut: a fast implementation of relaxed neighbor joining. Bioinformatics 2006, 22, 2823-2824. (Pubitemid 44742406)
-
(2006)
Bioinformatics
, vol.22
, Issue.22
, pp. 2823-2824
-
-
Sheneman, L.1
Evans, J.2
Foster, J.A.3
-
37
-
-
73449128271
-
Fast UniFrac: Facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
-
Hamady, M.; Lozupone, C.; Knight, R. Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data. ISME J. 2010, 4, 17-27.
-
(2010)
ISME J.
, vol.4
, pp. 17-27
-
-
Hamady, M.1
Lozupone, C.2
Knight, R.3
-
38
-
-
29144464937
-
UniFrac: A new phylogenetic method for comparing microbial communities
-
DOI 10.1128/AEM.71.12.8228-8235.2005
-
Lozupone, C.; Knight, R. UniFrac: a new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 2005, 71, 8228-8235. (Pubitemid 41803949)
-
(2005)
Applied and Environmental Microbiology
, vol.71
, Issue.12
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
-
39
-
-
20044371666
-
The Caco-2 cell line as a model of the intestinal barrier: Influence of cell and culture-related factors on Caco-2 cell functional characteristics
-
DOI 10.1007/s10565-005-0085-6
-
Sambuy, Y.; De Angelis, I.; Ranaldi, G.; Scarino, M. L.; Stammati, A.; Zucco, F. The Caco-2 cell line as a model of the intestinal barrier: influence of cell and culture-related factors on Caco-2 cell functional characteristics. Cell Biol. Toxicol. 2005, 21, 1-26. (Pubitemid 40767684)
-
(2005)
Cell Biology and Toxicology
, vol.21
, Issue.1
, pp. 1-26
-
-
Sambuy, Y.1
De Angelis, I.2
Ranaldi, G.3
Scarino, M.L.4
Stammati, A.5
Zucco, F.6
-
40
-
-
0020026263
-
Induction of maturation in cultured human monocytic leukemia cells by a phorbol diester
-
Tsuchiya, S.; Kobayashi, Y.; Goto, Y.; Okumura, H.; Nakae, S.; Konno, T.; Tada, K. Induction of maturation in cultured human monocytic leukemia cells by a phorbol diester. Cancer Res. 1982, 42, 1530-1536.
-
(1982)
Cancer Res.
, vol.42
, pp. 1530-1536
-
-
Tsuchiya, S.1
Kobayashi, Y.2
Goto, Y.3
Okumura, H.4
Nakae, S.5
Konno, T.6
Tada, K.7
-
41
-
-
0030013991
-
3
-
Schwende, H.; Fitzke, E.; Ambs, P.; Dieter, P. Differences in the state of differentiation of THP-1 cells induced by phorbol ester and 1,25-dihydroxyvitamin D3. J. Leukocyte Biol. 1996, 59, 555-61. (Pubitemid 26156616)
-
(1996)
Journal of Leukocyte Biology
, vol.59
, Issue.4
, pp. 555-561
-
-
Schwende, H.1
Fitzke, E.2
Ambs, P.3
Dieter, P.4
-
42
-
-
0037080024
-
Tissue expression of human Toll-like receptors and differential regulation of Toll-like receptor mRNAs in leukocytes in response to microbes, their products, and cytokines
-
Zarember, K. A.; Godowski, P. J. Tissue expression of human Toll-like receptors and differential regulation of Toll-like receptor mRNAs in leukocytes in response to microbes, their products, and cytokines. J. Immunol. 2002, 168, 554-61. (Pubitemid 34049553)
-
(2002)
Journal of Immunology
, vol.168
, Issue.2
, pp. 554-561
-
-
Zarember, K.A.1
Godowski, P.J.2
-
43
-
-
33750359116
-
Induction by activated macrophage-like THP-1 cells of apoptotic and necrotic cell death in intestinal epithelial Caco-2 monolayers via tumor necrosis factor-alpha
-
DOI 10.1016/j.yexcr.2006.08.018, PII S0014482706003569
-
Satsu, H.; Ishimoto, Y.; Nakano, T.; Mochizuki, T.; Iwanaga, T.; Shimizu, M. Induction by activated macrophage-like THP-1 cells of apoptotic and necrotic cell death in intestinal epithelial Caco-2 monolayers via tumor necrosis factor-alpha. Exp. Cell Res. 2006, 312, 3909-3919. (Pubitemid 44633890)
-
(2006)
Experimental Cell Research
, vol.312
, Issue.19
, pp. 3909-3919
-
-
Satsu, H.1
Ishimoto, Y.2
Nakano, T.3
Mochizuki, T.4
Iwanaga, T.5
Shimizu, M.6
-
44
-
-
84879087938
-
An in vitro technology platform to assess host-microbiota interactions in the gastrointestinal tract
-
Marzorati, M.; Pinheiro, I.; Van den Abbeele, P.; Van de Wiele, T.; Possemiers, S. An in vitro technology platform to assess host-microbiota interactions in the gastrointestinal tract. AgroFood Ind. Hi-Tech 2012, 23, 8-11.
-
(2012)
AgroFood Ind. Hi-Tech
, vol.23
, pp. 8-11
-
-
Marzorati, M.1
Pinheiro, I.2
Van Den Abbeele, P.3
Van De Wiele, T.4
Possemiers, S.5
-
45
-
-
3142724031
-
Toll-like receptor signalling
-
Akira, S.; Takeda, K. Toll-like receptor signalling. Nat. Rev. Immunol. 2004, 4, 499-511. (Pubitemid 38931765)
-
(2004)
Nature Reviews Immunology
, vol.4
, Issue.7
, pp. 499-511
-
-
Akira, S.1
Takeda, K.2
-
46
-
-
8144224956
-
Lactate-utilizing bacteria, isolated from human feces, that produce butyrate as a major fermentation product
-
DOI 10.1128/AEM.70.10.5810-5817.2004
-
Duncan, S. H.; Louis, P.; Flint, H. J. Lactate-utilizing bacteria, isolated from human feces, that produce butyrate as a major fermentation product. Appl. Environ. Microbiol. 2004, 70, 5810-5817. (Pubitemid 39471821)
-
(2004)
Applied and Environmental Microbiology
, vol.70
, Issue.10
, pp. 5810-5817
-
-
Duncan, S.H.1
Louis, P.2
Flint, H.J.3
-
47
-
-
0036782879
-
Effect of a preparation of Saccharomyces cerevisiae on microbial profiles and fermentation patterns in the large intestine of horses fed a high fiber or a high starch diet
-
Medina, B.; Girard, I. D.; Jacotot, E.; Julliand, V. Effect of a preparation of Saccharomyces cerevisiae on microbial profiles and fermentation patterns in the large intestine of horses fed a high fiber or a high starch diet. J. Anim. Sci. 2002, 80, 2600-2609. (Pubitemid 41138379)
-
(2002)
Journal of Animal Science
, vol.80
, Issue.10
, pp. 2600-2609
-
-
Medina, B.1
Girard, I.D.2
Jacotot, E.3
Julliand, V.4
-
48
-
-
78751679141
-
Dietary calcium phosphate content and oat beta-glucan influence gastrointestinal microbiota, butyrate-producing bacteria and butyrate fermentation in weaned pigs
-
Metzler-Zebeli, B. U.; Zijlstra, R. T.; Mosenthin, R.; Ganzle, M. G. Dietary calcium phosphate content and oat beta-glucan influence gastrointestinal microbiota, butyrate-producing bacteria and butyrate fermentation in weaned pigs. FEMS Microbiol. Ecol. 2011, 75, 402-413.
-
(2011)
FEMS Microbiol. Ecol.
, vol.75
, pp. 402-413
-
-
Metzler-Zebeli, B.U.1
Zijlstra, R.T.2
Mosenthin, R.3
Ganzle, M.G.4
-
49
-
-
74149093789
-
In vitro and in vivo evaluation of the prebiotics grobiotica (R)-A, inulin, mannanoligosaccharide, and galactooligosaccharide on the digestive microbiota and performance of hybrid striped bass (Morone chrysops x Morone saxatilis)
-
Burr, G.; Hume, M.; Ricke, S.; Nisbet, D.; Gatlin, D. In vitro and in vivo evaluation of the prebiotics grobiotica (R)-A, inulin, mannanoligosaccharide, and galactooligosaccharide on the digestive microbiota and performance of hybrid striped bass (Morone chrysops x Morone saxatilis). Microb. Ecol. 2010, 59, 187-198.
-
(2010)
Microb. Ecol.
, vol.59
, pp. 187-198
-
-
Burr, G.1
Hume, M.2
Ricke, S.3
Nisbet, D.4
Gatlin, D.5
-
50
-
-
80054980812
-
Regulation of inflammation by short chain fatty acids
-
Vinolo, M. A. R.; Rodrigues, H. G.; Nachbar, R. T.; Curi, R. Regulation of inflammation by short chain fatty acids. Nutrients 2011, 3, 858-876.
-
(2011)
Nutrients
, vol.3
, pp. 858-876
-
-
Vinolo, M.A.R.1
Rodrigues, H.G.2
Nachbar, R.T.3
Curi, R.4
-
51
-
-
0025801210
-
Rectal irrigation with short-chain fatty acids for distal ulcerative colitis. Preliminary report
-
Breuer, R. I.; Buto, S. K.; Christ, M. L.; Bean, J.; Vernia, P.; Paoluzi, P.; Di Paolo, M. C.; Caprilli, R. Rectal irrigation with short-chain fatty acids for distal ulcerative colitis. Preliminary report. Dig. Dis. Sci. 1991, 36, 185-187.
-
(1991)
Dig. Dis. Sci.
, vol.36
, pp. 185-187
-
-
Breuer, R.I.1
Buto, S.K.2
Christ, M.L.3
Bean, J.4
Vernia, P.5
Paoluzi, P.6
Di Paolo, M.C.7
Caprilli, R.8
-
52
-
-
0026691619
-
Effect of butyrate enemas on the colonic mucosa in distal ulcerative colitis
-
Scheppach, W.; Sommer, H.; Kirchner, T.; Paganelli, G. M.; Bartram, P.; Christl, S.; Richter, F.; Dusel, G.; Kasper, H. Effect of butyrate enemas on the colonic mucosa in distal ulcerative colitis. Gastroenterology 1992, 103, 51-56.
-
(1992)
Gastroenterology
, vol.103
, pp. 51-56
-
-
Scheppach, W.1
Sommer, H.2
Kirchner, T.3
Paganelli, G.M.4
Bartram, P.5
Christl, S.6
Richter, F.7
Dusel, G.8
Kasper, H.9
-
53
-
-
48949107752
-
Nutritional yeast culture has specific anti-microbial properties without affecting healthy flora. Preliminary results
-
Jensen, G. S.; Patterson, K. M.; Yoon, I. Nutritional yeast culture has specific anti-microbial properties without affecting healthy flora. Preliminary results. J. Anim. Feed Sci. 2008, 17, 247-252. (Pubitemid 352003985)
-
(2008)
Journal of Animal and Feed Sciences
, vol.17
, Issue.2
, pp. 247-252
-
-
Jensen, G.S.1
Patterson, K.M.2
Yoon, I.3
-
54
-
-
0034132534
-
The effects of dietary mannanoligosaccharides on cecal parameters and the concentrations of enteric bacteria in the ceca of Salmonella-challenged broiler chicks
-
Spring, P.; Wenk, C.; Dawson, K. A.; Newman, K. E. The effects of dietary mannanoligosaccharides on cecal parameters and the concentrations of enteric bacteria in the ceca of Salmonella-challenged broiler chicks. Poult. Sci. 2000, 79, 205-211.
-
(2000)
Poult. Sci.
, vol.79
, pp. 205-211
-
-
Spring, P.1
Wenk, C.2
Dawson, K.A.3
Newman, K.E.4
-
55
-
-
70349667034
-
Dietary mannan oligosaccharide supplementation modulates intestinal microbial ecology and improves gut morphology of rainbow trout, Oncorhynchus mykiss (Walbaum)
-
Dimitroglou, A.; Merrifield, D. L.; Moate, R.; Davies, S. J.; Spring, P.; Sweetman, J.; Bradley, G. Dietary mannan oligosaccharide supplementation modulates intestinal microbial ecology and improves gut morphology of rainbow trout, Oncorhynchus mykiss (Walbaum). J. Anim. Sci. 2009, 87, 3226-3234.
-
(2009)
J. Anim. Sci.
, vol.87
, pp. 3226-3234
-
-
Dimitroglou, A.1
Merrifield, D.L.2
Moate, R.3
Davies, S.J.4
Spring, P.5
Sweetman, J.6
Bradley, G.7
-
56
-
-
60349127074
-
Influence of oligosaccharides on the growth and tolerance capacity of lactobacilli to simulated stress environment
-
Pan, X.; Wu, T.; Zhang, L.; Cai, L.; Song, Z. Influence of oligosaccharides on the growth and tolerance capacity of lactobacilli to simulated stress environment. Lett. Appl. Microbiol. 2009, 48, 362-367.
-
(2009)
Lett. Appl. Microbiol.
, vol.48
, pp. 362-367
-
-
Pan, X.1
Wu, T.2
Zhang, L.3
Cai, L.4
Song, Z.5
-
57
-
-
67649823470
-
β-Glucan recognition by the innate immune system
-
Goodridge, H. S.; Wolf, A. J.; Underhill, D. M. β-Glucan recognition by the innate immune system. Immunol. Rev. 2009, 230, 38-50.
-
(2009)
Immunol. Rev.
, vol.230
, pp. 38-50
-
-
Goodridge, H.S.1
Wolf, A.J.2
Underhill, D.M.3
-
58
-
-
78650485624
-
Management of inflammatory bowel disease with infliximab and other anti-tumor necrosis factor alpha therapies
-
Magro, F.; Portela, F. Management of inflammatory bowel disease with infliximab and other anti-tumor necrosis factor alpha therapies. BioDrugs 2010, 24 (Suppl. 1), 3-14.
-
(2010)
BioDrugs
, vol.24
, Issue.SUPPL. 1
, pp. 3-14
-
-
Magro, F.1
Portela, F.2
-
59
-
-
25444452866
-
Butyrate suppresses tumor necrosis factor alpha production by regulating specific messenger RNA degradation mediated through a cis-acting AU-rich element
-
DOI 10.1002/art.21258
-
Fukae, J.; Amasaki, Y.; Yamashita, Y.; Bohgaki, T.; Yasuda, S.; Jodo, S.; Atsumi, T.; Koike, T. Butyrate suppresses tumor necrosis factor alpha production by regulating specific messenger RNA degradation mediated through a cis-acting AU-rich element. Arthritis Rheum. 2005, 52, 2697-2707. (Pubitemid 41369098)
-
(2005)
Arthritis and Rheumatism
, vol.52
, Issue.9
, pp. 2697-2707
-
-
Fukae, J.1
Amasaki, Y.2
Yamashita, Y.3
Bohgaki, T.4
Yasuda, S.5
Jodo, S.6
Atsumi, T.7
Koike, T.8
-
60
-
-
37149022209
-
Review article: The role of butyrate on colonic function
-
Hamer, H. M.; Jonkers, D.; Venema, K.; Vanhoutvin, S.; Troost, F. J.; Brummer, R. J. Review article: the role of butyrate on colonic function. Aliment. Pharmacol. Ther. 2008, 27, 104-119.
-
(2008)
Aliment. Pharmacol. Ther.
, vol.27
, pp. 104-119
-
-
Hamer, H.M.1
Jonkers, D.2
Venema, K.3
Vanhoutvin, S.4
Troost, F.J.5
Brummer, R.J.6
-
61
-
-
33745670638
-
The prenylflavonoid isoxanthohumol from hops (Humulus lupulus L.) is activated into the potent phytoestrogen 8-prenylnaringenin in vitro and in the human intestine
-
Possemiers, S.; Bolca, S.; Grootaert, C.; Heyerick, A.; Decroos, K.; Dhooge, W.; De Keukeleire, D.; Rabot, S.; Verstraete, W.; Van de Wiele, T. The prenylflavonoid isoxanthohumol from hops (Humulus lupulus L.) is activated into the potent phytoestrogen 8-prenylnaringenin in vitro and in the human intestine. J. Nutr. 2006, 136, 1862-1867.
-
(2006)
J. Nutr.
, vol.136
, pp. 1862-1867
-
-
Possemiers, S.1
Bolca, S.2
Grootaert, C.3
Heyerick, A.4
Decroos, K.5
Dhooge, W.6
De Keukeleire, D.7
Rabot, S.8
Verstraete, W.9
Van De Wiele, T.10
-
62
-
-
54249110955
-
Development of a real-time PCR method for Firmicutes and Bacteroidetes in faeces and its application to quantify intestinal population of obese and lean pigs
-
Guo, X.; Xia, X.; Tang, R.; Zhou, J.; Zhao, H.; Wang, K. Development of a real-time PCR method for Firmicutes and Bacteroidetes in faeces and its application to quantify intestinal population of obese and lean pigs. Lett. Appl. Microbiol. 2008, 47, 367-373.
-
(2008)
Lett. Appl. Microbiol.
, vol.47
, pp. 367-373
-
-
Guo, X.1
Xia, X.2
Tang, R.3
Zhou, J.4
Zhao, H.5
Wang, K.6
-
63
-
-
63849164050
-
Effect of inulin on the human gut microbiota: Stimulation of Bifidobacterium adolescentis and Faecalibacterium prausnitzii
-
Ramirez-Farias, C.; Slezak, K.; Fuller, Z.; Duncan, A.; Holtrop, G.; Louis, P. Effect of inulin on the human gut microbiota: stimulation of Bifidobacterium adolescentis and Faecalibacterium prausnitzii. Br. J. Nutr. 2009, 101, 541-550.
-
(2009)
Br. J. Nutr.
, vol.101
, pp. 541-550
-
-
Ramirez-Farias, C.1
Slezak, K.2
Fuller, Z.3
Duncan, A.4
Holtrop, G.5
Louis, P.6
-
64
-
-
65549150087
-
Comparative assessment of human and farm animal faecal microbiota using real-time quantitative PCR
-
Furet, J. P.; Firmesse, O.; Gourmelon, M.; Bridonneau, C.; Tap, J.; Mondot, S.; Dore, J.; Corthier, G. Comparative assessment of human and farm animal faecal microbiota using real-time quantitative PCR. FEMS Microbiol. Ecol. 2009, 68, 351-362.
-
(2009)
FEMS Microbiol. Ecol.
, vol.68
, pp. 351-362
-
-
Furet, J.P.1
Firmesse, O.2
Gourmelon, M.3
Bridonneau, C.4
Tap, J.5
Mondot, S.6
Dore, J.7
Corthier, G.8
-
65
-
-
9644268216
-
Development of an extensive set of 16S rDNA-targeted primers for quantification of pathogenic and indigenous bacteria in faecal samples by real-time PCR
-
DOI 10.1111/j.1365-2672.2004.02409.x
-
Rinttila, T.; Kassinen, A.; Malinen, E.; Krogius, L.; Palva, A. Development of an extensive set of 16S rDNA-targeted primers for quantification of pathogenic and indigenous bacteria in fecal samples by real-time PCR. J. Appl. Microbiol. 2004, 97, 1166-1177. (Pubitemid 39573940)
-
(2004)
Journal of Applied Microbiology
, vol.97
, Issue.6
, pp. 1166-1177
-
-
Rinttila, T.1
Kassinen, A.2
Malinen, E.3
Krogius, L.4
Palva, A.5
-
66
-
-
35948944302
-
Quantification of cell proliferation and alpha-toxin gene expression of Clostridium perfringens in the development of necrotic enteritis in broiler chickens
-
DOI 10.1128/AEM.01108-07
-
Si, W.; Gong, J.; Han, Y.; Yu, H.; Brennan, J.; Zhou, H.; Chen, S. Quantification of cell proliferation and alpha-toxin gene expression of Clostridium perf ringens in the development of necrotic enteritis in broiler chickens. Appl. Environ. Microbiol. 2007, 73, 7110-7113. (Pubitemid 350076836)
-
(2007)
Applied and Environmental Microbiology
, vol.73
, Issue.21
, pp. 7110-7113
-
-
Si, W.1
Gong, J.2
Han, Y.3
Yu, H.4
Brennan, J.5
Zhou, H.6
Chen, S.7
|