-
1
-
-
84871246567
-
Selection is more intelligent than design: Improving the affinity of a bivalent ligand through directed evolution
-
Ahmad KM, Xiao Y, Soh HT. 2012. Selection is more intelligent than design: Improving the affinity of a bivalent ligand through directed evolution. Nucleic Acids Res 40(22):11777-11783.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.22
, pp. 11777-11783
-
-
Ahmad, K.M.1
Xiao, Y.2
Soh, H.T.3
-
2
-
-
38849087269
-
Surface immobilization methods for aptamer diagnostic applications
-
Balamurugan S, Obubuafo A, Soper SA, Spivak DA. 2008. Surface immobilization methods for aptamer diagnostic applications. Anal Bioanal Chem 390(4):1009-1021.
-
(2008)
Anal Bioanal Chem
, vol.390
, Issue.4
, pp. 1009-1021
-
-
Balamurugan, S.1
Obubuafo, A.2
Soper, S.A.3
Spivak, D.A.4
-
3
-
-
34247536631
-
Aptamer from whole-bacterium SELEX as new therapeutic reagent against virulent Mycobacterium tuberculosis
-
Chen F, Zhou J, Luo F, Mohammed AB, Zhang XL. 2007. Aptamer from whole-bacterium SELEX as new therapeutic reagent against virulent Mycobacterium tuberculosis. Biochem Biophys Res Commun 357(3):743-748.
-
(2007)
Biochem Biophys Res Commun
, vol.357
, Issue.3
, pp. 743-748
-
-
Chen, F.1
Zhou, J.2
Luo, F.3
Mohammed, A.B.4
Zhang, X.L.5
-
4
-
-
77957259441
-
Quantitative selection of DNA aptamers through microfluidic selection and high-throughput sequencing
-
Cho M, Xiao Y, Nie J, Stewart R, Csordas AT, Oh SS, Thomson JA, Soh HT. 2010. Quantitative selection of DNA aptamers through microfluidic selection and high-throughput sequencing. Proc Natl Acad Sci USA 107(35):15373-15378.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.35
, pp. 15373-15378
-
-
Cho, M.1
Xiao, Y.2
Nie, J.3
Stewart, R.4
Csordas, A.T.5
Oh, S.S.6
Thomson, J.A.7
Soh, H.T.8
-
5
-
-
0025074907
-
In vitro selection of RNA molecules that bind specific ligands
-
Ellington AD, Szostak JW. 1990. In vitro selection of RNA molecules that bind specific ligands. Nature 346(6287):818-822.
-
(1990)
Nature
, vol.346
, Issue.6287
, pp. 818-822
-
-
Ellington, A.D.1
Szostak, J.W.2
-
6
-
-
75449119505
-
Aptamers generated from cell-SELEX for molecular medicine: A chemical biology approach
-
Fang X, Tan W. 2010. Aptamers generated from cell-SELEX for molecular medicine: A chemical biology approach. Acc Chem Res 43(1):48-57.
-
(2010)
Acc Chem Res
, vol.43
, Issue.1
, pp. 48-57
-
-
Fang, X.1
Tan, W.2
-
7
-
-
21844467243
-
In vitro RNA random pools are not structurally diverse: A computational analysis
-
Gevertz J, Gan HH, Schlick T. 2005. In vitro RNA random pools are not structurally diverse: A computational analysis. RNA 11(6):853-863.
-
(2005)
RNA
, vol.11
, Issue.6
, pp. 853-863
-
-
Gevertz, J.1
Gan, H.H.2
Schlick, T.3
-
9
-
-
0019255349
-
Biology, immunology, and cariogenicity of Streptococcus mutans
-
Hamada S, Slade HD. 1980. Biology, immunology, and cariogenicity of Streptococcus mutans. Microbiol Rev 44(2):331-384.
-
(1980)
Microbiol Rev
, vol.44
, Issue.2
, pp. 331-384
-
-
Hamada, S.1
Slade, H.D.2
-
11
-
-
26444478237
-
A novel method of screening thrombin-inhibiting DNA aptamers using an evolution-mimicking algorithm
-
Ikebukuro K, Okumura Y, Sumikura K, Karube I. 2005. A novel method of screening thrombin-inhibiting DNA aptamers using an evolution-mimicking algorithm. Nucleic Acids Res 33(12):e108.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.12
-
-
Ikebukuro, K.1
Okumura, Y.2
Sumikura, K.3
Karube, I.4
-
12
-
-
58549109637
-
Array-based evolution of DNA aptamers allows modelling of an explicit sequence-fitness landscape
-
Knight CG, Platt M, Rowe W, Wedge DC, Khan F, Day PJ, McShea A, Knowles J, Kell DB. 2009. Array-based evolution of DNA aptamers allows modelling of an explicit sequence-fitness landscape. Nucleic Acids Res 37(1):e6.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.1
-
-
Knight, C.G.1
Platt, M.2
Rowe, W.3
Wedge, D.C.4
Khan, F.5
Day, P.J.6
McShea, A.7
Knowles, J.8
Kell, D.B.9
-
13
-
-
79952599370
-
Selection of DNA aptamers recognizing small cell lung cancer using living cell-SELEX
-
Kunii T, Ogura S, Mie M, Kobatake E. 2011. Selection of DNA aptamers recognizing small cell lung cancer using living cell-SELEX. Analyst 136(7):1310-1312.
-
(2011)
Analyst
, vol.136
, Issue.7
, pp. 1310-1312
-
-
Kunii, T.1
Ogura, S.2
Mie, M.3
Kobatake, E.4
-
14
-
-
78649979777
-
Fluorescence-activated cell sorting for aptamer SELEX with cell mixtures
-
Mayer G, Ahmed MS, Dolf A, Endl E, Knolle PA, Famulok M. 2010. Fluorescence-activated cell sorting for aptamer SELEX with cell mixtures. Nat Protoc 5(12):1993-2004.
-
(2010)
Nat Protoc
, vol.5
, Issue.12
, pp. 1993-2004
-
-
Mayer, G.1
Ahmed, M.S.2
Dolf, A.3
Endl, E.4
Knolle, P.A.5
Famulok, M.6
-
15
-
-
79960446669
-
Development of a novel biosensing system based on the structural change of a polymerized guanine-quadruplex DNA nanostructure
-
Morita Y, Yoshida W, Savory N, Han SW, Tera M, Nagasawa K, Nakamura C, Sode K, Ikebukuro K. 2011. Development of a novel biosensing system based on the structural change of a polymerized guanine-quadruplex DNA nanostructure. Biosens Bioelectron 26(12):4837-4841.
-
(2011)
Biosens Bioelectron
, vol.26
, Issue.12
, pp. 4837-4841
-
-
Morita, Y.1
Yoshida, W.2
Savory, N.3
Han, S.W.4
Tera, M.5
Nagasawa, K.6
Nakamura, C.7
Sode, K.8
Ikebukuro, K.9
-
16
-
-
33745750757
-
Aptamer selection based on inhibitory activity using an evolution-mimicking algorithm
-
Noma T, Ikebukuro K. 2006. Aptamer selection based on inhibitory activity using an evolution-mimicking algorithm. Biochem Biophys Res Commun 347(1):226-231.
-
(2006)
Biochem Biophys Res Commun
, vol.347
, Issue.1
, pp. 226-231
-
-
Noma, T.1
Ikebukuro, K.2
-
17
-
-
33750984240
-
Characterization and application of aptamers for Taq DNA polymerase selected using an evolution-mimicking algorithm
-
Noma T, Sode K, Ikebukuro K. 2006. Characterization and application of aptamers for Taq DNA polymerase selected using an evolution-mimicking algorithm. Biotechnol Lett 28(23):1939-1944.
-
(2006)
Biotechnol Lett
, vol.28
, Issue.23
, pp. 1939-1944
-
-
Noma, T.1
Sode, K.2
Ikebukuro, K.3
-
18
-
-
84872578654
-
Affinity improvement of a VEGF aptamer by in silico maturation for a sensitive VEGF-detection system
-
Nonaka Y, Yoshida W, Abe K, Ferri S, Schulze H, Bachmann TT, Ikebukuro K. 2013. Affinity improvement of a VEGF aptamer by in silico maturation for a sensitive VEGF-detection system. Anal Chem 85(2):1132-1137.
-
(2013)
Anal Chem
, vol.85
, Issue.2
, pp. 1132-1137
-
-
Nonaka, Y.1
Yoshida, W.2
Abe, K.3
Ferri, S.4
Schulze, H.5
Bachmann, T.T.6
Ikebukuro, K.7
-
19
-
-
58149156236
-
Screening of DNA aptamer against mouse prion protein by competitive selection
-
Ogasawara D, Hasegawa H, Kaneko K, Sode K, Ikebukuro K. 2007. Screening of DNA aptamer against mouse prion protein by competitive selection. Prion 1(4):248-254.
-
(2007)
Prion
, vol.1
, Issue.4
, pp. 248-254
-
-
Ogasawara, D.1
Hasegawa, H.2
Kaneko, K.3
Sode, K.4
Ikebukuro, K.5
-
20
-
-
35448983988
-
Circular dichroism of quadruplex DNAs: Applications to structure, cation effects and ligand binding
-
Paramasivan S, Rujan I, Bolton PH. 2007. Circular dichroism of quadruplex DNAs: Applications to structure, cation effects and ligand binding. Methods 43(4):324-331.
-
(2007)
Methods
, vol.43
, Issue.4
, pp. 324-331
-
-
Paramasivan, S.1
Rujan, I.2
Bolton, P.H.3
-
21
-
-
65849377316
-
Aptamer evolution for array-based diagnostics
-
Platt M, Rowe W, Wedge DC, Kell DB, Knowles J, Day PJ. 2009. Aptamer evolution for array-based diagnostics. Anal Biochem 390(2):203-205.
-
(2009)
Anal Biochem
, vol.390
, Issue.2
, pp. 203-205
-
-
Platt, M.1
Rowe, W.2
Wedge, D.C.3
Kell, D.B.4
Knowles, J.5
Day, P.J.6
-
22
-
-
78649750186
-
Selection of DNA aptamer against prostate specific antigen using a genetic algorithm and application to sensing
-
Savory N, Abe K, Sode K, Ikebukuro K. 2010. Selection of DNA aptamer against prostate specific antigen using a genetic algorithm and application to sensing. Biosens Bioelectron 26(4):1386-1391.
-
(2010)
Biosens Bioelectron
, vol.26
, Issue.4
, pp. 1386-1391
-
-
Savory, N.1
Abe, K.2
Sode, K.3
Ikebukuro, K.4
-
23
-
-
84896420096
-
In silico maturation of binding-specificity of DNA aptamers against Proteus mirabilis
-
Savory N, Lednor D, Tsukakoshi K, Abe K, Yoshida W, Ferri S, Jones BV, Ikebukuro K. 2013. In silico maturation of binding-specificity of DNA aptamers against Proteus mirabilis. Biotechnol Bioeng 110(10):2573-2580.
-
(2013)
Biotechnol Bioeng
, vol.110
, Issue.10
, pp. 2573-2580
-
-
Savory, N.1
Lednor, D.2
Tsukakoshi, K.3
Abe, K.4
Yoshida, W.5
Ferri, S.6
Jones, B.V.7
Ikebukuro, K.8
-
24
-
-
84855281375
-
Probing the SELEX process with next-generation sequencing
-
Schütze T, Wilhelm B, Greiner N, Braun H, Peter F, Mörl M, Erdmann VA, Lehrach H, Konthur Z, Menger M, Arndt PF, Glökler J. 2011. Probing the SELEX process with next-generation sequencing. PLoS ONE 6(12):e29604.
-
(2011)
PLoS ONE
, vol.6
, Issue.12
-
-
Schütze, T.1
Wilhelm, B.2
Greiner, N.3
Braun, H.4
Peter, F.5
Mörl, M.6
Erdmann, V.A.7
Lehrach, H.8
Konthur, Z.9
Menger, M.10
Arndt, P.F.11
Glökler, J.12
-
25
-
-
33747053632
-
Aptamers evolved from live cells as effective molecular probes for cancer study
-
Shangguan D, Li Y, Tang Z, Cao ZC, Chen HW, Mallikaratchy P, Sefah K, Yang CJ, Tan W. 2006. Aptamers evolved from live cells as effective molecular probes for cancer study. Proc Natl Acad Sci USA 103(32):11838-11843.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.32
, pp. 11838-11843
-
-
Shangguan, D.1
Li, Y.2
Tang, Z.3
Cao, Z.C.4
Chen, H.W.5
Mallikaratchy, P.6
Sefah, K.7
Yang, C.J.8
Tan, W.9
-
26
-
-
77953185961
-
Visualization of G-quadruplexes by using a BODIPY-labeled macrocyclic heptaoxazole
-
Tera M, Iida K, Ikebukuro K, Seimiya H, Shin-Ya K, Nagasawa K. 2010. Visualization of G-quadruplexes by using a BODIPY-labeled macrocyclic heptaoxazole. Org Biomol Chem 8(12):2749-2755.
-
(2010)
Org Biomol Chem
, vol.8
, Issue.12
, pp. 2749-2755
-
-
Tera, M.1
Iida, K.2
Ikebukuro, K.3
Seimiya, H.4
Shin-Ya, K.5
Nagasawa, K.6
-
27
-
-
67349222249
-
Aptasensors for detection of microbial and viral pathogens
-
Torres-Chavolla E, Alocilja EC. 2009. Aptasensors for detection of microbial and viral pathogens. Biosens Bioelectron 24(11):3175-3182.
-
(2009)
Biosens Bioelectron
, vol.24
, Issue.11
, pp. 3175-3182
-
-
Torres-Chavolla, E.1
Alocilja, E.C.2
-
28
-
-
84863469025
-
Selection of DNA aptamers that recognize α-synuclein oligomers using a competitive screening method
-
Tsukakoshi K, Abe K, Sode K, Ikebukuro K. 2012. Selection of DNA aptamers that recognize α-synuclein oligomers using a competitive screening method. Anal Chem 84(13):5542-5547.
-
(2012)
Anal Chem
, vol.84
, Issue.13
, pp. 5542-5547
-
-
Tsukakoshi, K.1
Abe, K.2
Sode, K.3
Ikebukuro, K.4
-
29
-
-
0025194307
-
Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
-
Tuerk C, Gold L. 1990. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249(4968):505-510.
-
(1990)
Science
, vol.249
, Issue.4968
, pp. 505-510
-
-
Tuerk, C.1
Gold, L.2
-
30
-
-
84878625251
-
Aptamer selection based on g4-forming promoter region
-
Yoshida W, Saito T, Yokoyama T, Ferri S, Ikebukuro K. 2013. Aptamer selection based on g4-forming promoter region. PLoS ONE 8(6):e65497.
-
(2013)
PLoS ONE
, vol.8
, Issue.6
-
-
Yoshida, W.1
Saito, T.2
Yokoyama, T.3
Ferri, S.4
Ikebukuro, K.5
-
31
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31(13):3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.13
, pp. 3406-3415
-
-
Zuker, M.1
|