Characterization and application of aptamers for Taq DNA polymerase selected using an evolution-mimicking algorithm

Biotechnology Letters

Volumn 28, Issue 23, 2006, Pages 1939-1944

  Noma, Takahisa ^a   Sode, Koji ^a   Ikebukuro, Kazunori ^a  

^a TOKYO UNIVERSITY OF AGRICULTURE AND TECHNOLOGY   (Japan)

Author keywords

Aptamer; Evolution mimicking algorithm; Hot start PCR

Indexed keywords

DNA; GENES; GENETIC ALGORITHMS;

APTAMER; EVOLUTION MIMICKING ALGORITHMS (EMA); HOT START PCR; POLYMERASE;

ENZYME INHIBITION;

APTAMER; LIGAND; OLIGONUCLEOTIDE; TAQ POLYMERASE; VIRUS DNA;

ALGORITHM; ARTICLE; BIOLOGICAL MODEL; BIOTECHNOLOGY; CHEMISTRY; GENETICS; HUMAN IMMUNODEFICIENCY VIRUS 1; METHODOLOGY; MOLECULAR EVOLUTION; MOLECULAR GENETICS; MUTATION; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION;

ALGORITHMS; APTAMERS, NUCLEOTIDE; BASE SEQUENCE; BIOTECHNOLOGY; DNA, VIRAL; EVOLUTION, MOLECULAR; HIV-1; LIGANDS; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; MUTATION; OLIGONUCLEOTIDES; POLYMERASE CHAIN REACTION; TAQ POLYMERASE;

EID: 33750984240     PISSN: 01415492     EISSN: 15736776     Source Type: Journal    
DOI: 10.1007/s10529-006-9178-4     Document Type: Article

References (13)

1. Abramson RD (1995) Thermostable DNA polymerases. In: Innis MA, Gelfand DH, Sninsky JJ (eds) PCR strategies. Academic Press, New York
2. Birch DE, Kolmodin L, Laird WJ, McKinney N, Wong J, Young KKY, Zangenberg GA, Zoccoli MA (1996) Simplified hot start PCR. Nature 381:445-446
3. Gillet VJ (2004) Applications of evolutionary computation in drug design. Struct Bonding 110:133-152
4. Ikebukuro K, Okumura Y, Sumikura K, Karube I (2005) A novel method of screening thrombin-inhibiting DNA aptamers using an evolution-mimicking algorithm. Nucleic Acids Res 33:e108
5. Jin AY, Leung FY, Weaver DF (1999) Three variations of genetic algorithm for searching biomolecular conformation space: comparison of GAP 1.0, 2.0, and 3.0. J comput chem 20:1329-1342
6. Kellogg DE, Rybalkin I, Chen S, Mukhamedova N, Vlasik T, Siebert PD, Chenchik (1994) A TaqStart Antibody: "hot start" PCR facilitated by a neutralizing monoclonal antibody directed against Taq DNA polymerase. Biotechniques 16:1134-1137
7. Kim Y, Eom SH, Wang J, Lee DS, Suh SW, Steitz TA (1995) Crystal structure of Thermus aquaticus DNA polymerase. Nature 376:612-616
8. Lee JF, Stovall GM, Ellington AD (2006) Aptamer therapeutics advance. Curr Opin Chem Biol 10:282-289
9. Lin Y, Jayasena SD (1997) Inhibition of multiple thermostable DNA polymerases by a heterodimeric aptamer. J Mol Biol 271:100-111
10. Myers TW, Gelfand DH (1991) Reverse transcription and DNA amplification by a Thermus thermophilus DNA polymerase. Biochemistry 30:7661-7666
11. Noma T, Ikebukuro K (2006) Aptamer selection based on inhibitory activity using an evolution-mimicking algorithm. Biochem Biophys Res Commun 347:226-231
12. Sobral BW, Honeycutt RJ (1993) High output genetic-mapping of polyploids using PCR-generated markers. Theor Appl Genet 86:105-112
13. Weber L, Wallbaum S, Broger C, Gubernator K (1995) Optimization of the biological-activity of combinatorial compound libraries by a genetic algorithm. Angew Chem Int ed Eng 34:2280-2282