Dengue Virus in Sub-tropical Northern and Central Viet Nam: Population Immunity and Climate Shape Patterns of Viral Invasion and Maintenance

PLoS Neglected Tropical Diseases

Volumn 7, Issue 12, 2013, Pages

  Rabaa, Maia A ^a,b   Simmons, Cameron P ^b,c   Fox, Annette ^b,c   Le, Mai Quynh ^d   Nguyen, Thuy Thi Thu ^d   Le, Hai Yen ^e   Gibbons, Robert V ^f   Nguyen, Xuyen Thanh ^e   Holmes, Edward C ^g,h   Aaskov, John G ^i,j  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

^b OXFORD UNIVERSITY CLINICAL RESEARCH UNIT   (Viet Nam)

^c UNIVERSITY OF OXFORD   (United Kingdom)

^d NATIONAL INSTITUTE OF HYGIENE AND EPIDEMIOLOGY   (Viet Nam)

^e Military Institute of Hygiene and Epidemiology   (Viet Nam)

^f ARMED FORCES RESEARCH INSTITUTE OF MEDICAL SCIENCES   (Thailand)

^g UNIVERSITY OF SYDNEY   (Australia)

^h NATIONAL INSTITUTES OF HEALTH   (United States)

ⁱ QUEENSLAND UNIVERSITY OF TECHNOLOGY   (Australia)

^j AUSTRALIAN ARMY MALARIA INSTITUTE   (Australia)

more..

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CLIMATE; DENGUE VIRUS; DENGUE VIRUS 1; GENE SEQUENCE; HUMAN; IMMUNITY; MAJOR CLINICAL STUDY; NUCLEOTIDE SEQUENCE; PARASITE MIGRATION; PHYLOGENY; PHYLOGEOGRAPHY; SPATIAL ANALYSIS; TEMPERATURE; VIET NAM; VIRUS TRANSMISSION;

CLIMATE; CLUSTER ANALYSIS; DENGUE; DENGUE VIRUS; HUMANS; MOLECULAR EPIDEMIOLOGY; MOLECULAR SEQUENCE DATA; PHYLOGEOGRAPHY; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; VIETNAM; VIRAL ENVELOPE PROTEINS;

EID: 84892777793     PISSN: 19352727     EISSN: 19352735     Source Type: Journal    
DOI: 10.1371/journal.pntd.0002581     Document Type: Article

References (60)

1. Holmes EC, Burch SS, (2000) The causes and consequences of genetic variation in dengue virus. Trends Microbiol 8: 74-77.
2. World Health Organization (2009) Dengue: Guidelines for treatment, prevention and control. Available: http://whqlibdoc.who.int/publications/2009/9789241547871_eng.pdf. Accessed 6 January 2012.
3. Beatty ME, Beutels P, Meltzer MI, Shepard DS, Hombach J, et al. (2011) Health economics of dengue: a systematic literature review and expert panel's assessment. Am J Trop Med Hyg 84: 473-488.
4. Bhatt S, Gething PW, Brady OJ, Messina JP, Farlow AW, et al. (2013) The global distribution and burden of dengue. Nature 25: 504-507.
5. Cuong HQ, Hien NT, Duong TN, Phong T V, Cam NN, et al. (2011) Quantifying the emergence of dengue in Hanoi, Vietnam: 1998-2009. PLoS Negl Trop Dis 5: e1322.
6. Lin CC, Huang YH, Shu PY, Wu HS, Lin YS, et al. (2010) Characteristic of dengue disease in Taiwan: 2002-2007. Am J Trop Med Hyg 82: 731-739.
7. Wu JY, Lun ZR, James AA, Chen XG, (2010) Dengue Fever in mainland China. Am J Trop Med Hyg 83: 664-671.
8. Jing QL, Yang ZC, Luo L, Xiao XC, Di B, et al. (2012) Emergence of dengue virus 4 genotype II in Guangzhou, China, 2010: Survey and molecular epidemiology of one community outbreak. BMC Infect Dis 12: 87.
9. Zheng K, Zhou HQ, Yan J, Ke CW, Maeda A, et al. (2009) Molecular characterization of the E gene of dengue virus type 1 isolated in Guangdong province, China, in 2006. Epidemiol Infect 137: 73-78.
10. Shu PY, Su CL, Liao TL, Yang CF, Chang SF, et al. (2009) Molecular characterization of dengue viruses imported into Taiwan during 2003-2007: geographic distribution and genotype shift. Am J Trop Med Hyg 80: 1039-1046.
11. Huang JH, Liao TL, Chang SF, Su CL, Chien LJ, et al. (2007) Laboratory-based dengue surveillance in Taiwan, 2005: a molecular epidemiologic study. Am J Trop Med Hyg 77: 903-909.
12. Chen S, (2011) The origin of dengue viruses caused the DF outbreak in Guangdong province, China, in 2006. Infect Genet Evol 11: 1183-1187.
13. Liang H, Luo L, Yang Z, Di B, Bai Z, et al. (2013) Re-Emergence of Dengue Virus Type 3 in Canton, China, 2009-2010, Associated with Multiple Introductions through Different Geographical Routes. PLoS One 8: e55353.
14. Halstead SB, Voulgaropoulos EM, Tien NH, Udomsakdi S, (1965) Dengue hemorrhagic fever in South Vietnam: report of the 1963 outbreak. Am J Trop Med Hyg 14: 819-830.
15. Thai KT, Cazelles B, Nguyen N V, Vo LT, Boni MF, et al. (2010) Dengue dynamics in Binh Thuan province, southern Vietnam: periodicity, synchronicity and climate variability. PLoS Negl Trop Dis 4: e747.
16. Thai KT, Binh TQ, Giao PT, Phuong HL, Hung le Q, et al. (2005) Seroprevalence of dengue antibodies, annual incidence and risk factors among children in southern Vietnam. Trop Med Int Heal 10: 379-386.
17. Rabaa MA, Ty Hang VT, Wills B, Farrar J, Simmons CP, et al. (2010) Phylogeography of Recently Emerged DENV-2 in Southern Viet Nam. PLoS Negl Trop Dis 4: e766.
18. Raghwani J, Rambaut A, Holmes EC, Hang VT, Hien TT, et al. (2011) Endemic dengue associated with the co-circulation of multiple viral lineages and localized density-dependent transmission. PLoS Pathog 7: e1002064.
19. Hang VTT, Holmes EC, Duong V, Nguyen TQ, Tran TH, et al. (2010) Emergence of the Asian 1 genotype of dengue virus serotype 2 in viet nam: in vivo fitness advantage and lineage replacement in South-East Asia. PLoS Negl Trop Dis 4: e757.
20. World Health Organization Western Pacific Region Office (2008) Report on the Asia-Pacific dengue program managers meeting. Asia-Pacific Dengue Program Managers Meeting, World Health Organization- Western Pacific Region; 5-8 May 2008; Singapore.
21. Anderson RM, May RM (1991) Infectious diseases of humans: dynamics and control. New York: Oxford University Press.
22. Cummings DA, Iamsirithaworn S, Lessler JT, McDermott A, Prasanthong R, et al. (2009) The impact of the demographic transition on dengue in Thailand: insights from a statistical analysis and mathematical modeling. PLoS Med 6: e1000139.
23. Scott TW, Amerasinghe PH, Morrison AC, Lorenz LH, Clark GG, et al. (2000) Longitudinal studies of Aedes aegypti (Diptera: Culicidae) in Thailand and Puerto Rico: blood feeding frequency. J Med Entomol 37: 89-101.
24. Watts DM, Burke DS, Harrison BA, Whitmire RE, Nisalak A, (1987) Effect of temperature on the vector efficiency of Aedes aegypti for dengue 2 virus. Am J Trop Med Hyg 36: 143-152.
25. Lambrechts L, Paaijmans KP, Fansiri T, Carrington LB, Kramer LD, et al. (2011) Impact of daily temperature fluctuations on dengue virus transmission by Aedes aegypti. Proc Natl Acad Sci U S A 108: 7460-7465.
26. Derrick EH, Bicks VA, (1958) The limiting temperature for the transmission of dengue. Australas Ann Med 7: 102-107.
27. Jarman RG, Holmes EC, Rodpradit P, Klungthong C, Gibbons R V, et al. (2008) Microevolution of Dengue viruses circulating among primary school children in Kamphaeng Phet, Thailand. J Virol 82: 5494-5500.
28. Schreiber MJ, Holmes EC, Ong SH, Soh HS, Liu W, et al. (2009) Genomic epidemiology of a dengue virus epidemic in urban Singapore. J Virol 83: 4163-4173.
29. Wu W, Bai Z, Zhou H, Tu Z, Fang M, et al. (2011) Molecular epidemiology of dengue viruses in southern China from 1978 to 2006. Virol J 8: 322.
30. Rabaa MA, Klungthong C, Yoon I-K, Holmes EC, Chinnawirotpisan P, et al. (2013) Frequent In-Migration and Highly Focal Transmission of Dengue Viruses among Children in Kamphaeng Phet, Thailand. PLoS Negl Trop Dis 7: e1990.
31. Thu HM, Lowry K, Myint TT, Shwe TN, Han AM, et al. (2004) Myanmar dengue outbreak associated with displacement of serotypes 2, 3, and 4 by dengue 1. Emerg Infect Dis 10: 593-597.
32. A Nuegoonpipat A, Berlioz-Arthaud A, Chow V, Endy T, Lowry K, et al. (2004) Sustained transmission of dengue virus type 1 in the Pacific due to repeated introductions of different Asian strains. Virology 329: 505-512.
33. Rambaut A (2002) Sequence alignment editor. Available: http://tree.bio.ed.ac.uk/software/seal/.
34. Guindon S, Gascuel O, (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704.
35. Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214.
36. Lemey P, Rambaut A, Drummond AJ, Suchard MA, (2009) Bayesian phylogeography finds its roots. PLoS Comput Biol 5: e1000520.
37. Ayres DL, Darling A, Zwickl DJ, Beerli P, Holder MT, et al. (2012) BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics. Syst Biol 61: 170-173.
38. Minin VN, Suchard MA, (2008) Counting labeled transitions in continuous-time Markov models of evolution. J Math Biol 56: 391-412.
39. Minin VN, Suchard MA, (2008) Fast, accurate and simulation-free stochastic mapping. Philos Trans R Soc B-Biological Sci 363: 3985-3995.
40. Parker J, Rambaut A, Pybus OG, (2008) Correlating viral phenotypes with phylogeny: Accounting for phylogenetic uncertainty. Infect Genet Evol 8: 239-246.
41. General Statistics Office of Viet Nam (2010) The 2009 Vietnam population and housing census: completed results. Available: http://www.gso.gov.vn/default_en.aspx?tabid=515&idmid=5&ItemID=10799. Accessed 20 November 2011.
42. Department of Statistics Singapore (2011) Census of population 2010. Available: http://www.singstat.gov.sg/Publications/publications_and_papers/cop2010/cop2010_sr1.html. Accessed 20 November 2011.
43. National Statistical Office of Thailand (2009) The 2008 key statistics of Thailand. Available: http://web.nso.go.th/en/survey/keystat/keystat08.pdf. Accessed 20 November 2011.
44. Latin American and Caribbean Demographic Center, National Institute of Statistics Cambodia (2010) Cambodia General Population Census 2008. Available: http://celade.cepal.org/redkhm/census/khm2008/. Accessed 20 November 2011.
45. Xia YC, Bjornstad ON, Grenfell BT, (2004) Measles metapopulation dynamics: A gravity model for epidemiological coupling and dynamics. Am Nat 164: 267-281.
46. Lourenco J, Recker M, (2010) Viral and epidemiological determinants of the invasion dynamics of novel dengue genotypes. PLoS Negl Trop Dis 4: e894.
47. Egger JR, Ooi EE, Kelly DW, Woolhouse ME, Davies CR, et al. (2008) Reconstructing historical changes in the force of infection of dengue fever in Singapore: implications for surveillance and control. Bull World Heal Organ 86: 187-196.
48. Vong S, Khieu V, Glass O, Ly S, Duong V, et al. (2010) Dengue incidence in urban and rural Cambodia: results from population-based active fever surveillance, 2006-2008. PLoS Negl Trop Dis 4: e903.
49. Schmidt WP, Suzuki M, Thiem VD, White RG, Tsuzuki A, et al. (2011) Population density, water supply, and the risk of dengue fever in Vietnam: cohort study and spatial analysis. PLoS Med 8: e1001082.
50. Thai KT, Nishiura H, Hoang PL, Tran NT, Phan GT, et al. (2011) Age-specificity of clinical dengue during primary and secondary infections. PLoS Negl Trop Dis 5: e1180.
51. Anders KL, Nguyet NM, Chau N V, Hung NT, Thuy TT, et al. (2011) Epidemiological factors associated with dengue shock syndrome and mortality in hospitalized dengue patients in Ho Chi Minh City, Vietnam. Am J Trop Med Hyg 84: 127-134.
52. Raftery AE, Newton MA, Statgopan JM, Krivitsky P (2007) Estimating the Integrated Likelihood via Posterior Simulation Using the Harmonic Mean Identity (with Discussion). In: Bernardo JM, editor. Bayesian Statistics 8. New York: Oxford University Press.
53. Baele G, Lemey P, Bedford T, Rambaut A, Suchard MA, et al. (2012) Improving the accuracy of demographic and molecular clock model comparison while accomodating phylogenetic uncertainty. Mol Biol Evol 29: 2157-2167.
54. Fox A, Le NM, Simmons CP, Wolbers M, Wertheim HF, et al. (2011) Immunological and viral determinants of dengue severity in hospitalized adults in Ha Noi, Viet Nam. PLoS Negl Trop Dis 5: e967.
55. Lambrechts L, Fansiri T, Pongsiri A, Thaisomboonsuk B, Klungthong C, et al. (2012) Dengue-1 virus clade replacement in Thailand associated with enhanced mosquito transmission. J Virol 86: 1853-1861.
56. Balmaseda A, Standish K, Mercado JC, Matute JC, Tellez Y, et al. (2010) Trends in patterns of dengue transmission over 4 years in a pediatric cohort study in Nicaragua. J Infect Dis 201: 5-14.
57. VID Group (2009). List of Established Industrial Parks. Available: http://www.vidgroup.com.vn/b-du-an-dau-tu/A-ban-111o-vi-tri-cac-khu-cong-nghiep/x-ban-111o-cac-khu-cong-nghiep-viet-nam/. Accessed 10 February 2012.
58. Ministry of Planning and Investment, General Statistics Office (2010) Migration and urbanization in Vietnam: patterns, trends and differentials. Available: http://vietnam.unfpa.org/webdav/site/vietnam/shared/Census publications/7_Monograph-Migration-Urbanization.pdf. Accessed 3 December 2011.
59. Ooi EE, Goh KT, Gubler DJ, (2006) Dengue prevention and 35 years of vector control in Singapore. Emerg Infect Dis 12: 887-893.
60. Le MQ, Lam HM, Cuong VD, Lam TT-Y, Halpin RA, et al. (2013) Migration and persistence of human influenza A viruses, Vietnam, 2001-2008. Emerg Infect Dis 19: 1756-1765.