BEAGLE: An application programming interface and high-performance computing library for statistical phylogenetics

Systematic Biology

Volumn 61, Issue 1, 2012, Pages 170-173

  Ayres, Daniel L ^a   Darling, Aaron ^b   Zwickl, Derrick J ^c   Beerli, Peter ^d   Holder, Mark T ^c   Lewis, Paul O ^e   Huelsenbeck, John P ^f   Ronquist, Fredrik ^g   Swofford, David L ^h   Cummings, Michael P ^a   Rambaut, Andrew ^i,j   Suchard, Marc A ^k,l  

^a Bldg 142   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF KANSAS   (United States)

^d FLORIDA STATE UNIVERSITY   (United States)

^e UNIVERSITY OF CONNECTICUT   (United States)

^f UNIVERSITY OF CALIFORNIA   (United States)

^g SWEDISH MUSEUM OF NATURAL HISTORY   (Sweden)

^h DUKE UNIVERSITY   (United States)

ⁱ UNIVERSITY OF EDINBURGH   (United Kingdom)

^j NATIONAL INSTITUTES OF HEALTH   (United States)

^k UNIVERSITY OF CALIFORNIA   (United States)

^l UNIVERSITY OF CALIFORNIA   (United States)

more..

Author keywords

Bayesian phylogenetics; GPU; maximum likelihood; parallel computing

Indexed keywords

ALGORITHM; ARTICLE; BIOLOGY; COMPUTER ANALYSIS; COMPUTER PROGRAM; EVALUATION; GENOME; METHODOLOGY; MOLECULAR EVOLUTION; PHYLOGENY;

ALGORITHMS; COMPUTATIONAL BIOLOGY; COMPUTING METHODOLOGIES; EVOLUTION, MOLECULAR; GENOME; PHYLOGENY; SOFTWARE;

EID: 84555188616     PISSN: 10635157     EISSN: 1076836X     Source Type: Journal    
DOI: 10.1093/sysbio/syr100     Document Type: Article

References (7)

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2. Felsenstein J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17:368-376. (Pubitemid 11016207)
3. Regier J., Shultz J., Zwick A., Hussey A., Ball B., Wetzer R., Martin J., Cunningham C. 2010. Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences. Nature. 463:1079-1083.
4. Ronquist F., Huelsenbeck J.P. 2003. Mr Bayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 19:1572-1574. (Pubitemid 37038874)
5. Suchard M.A., Rambaut A. 2009. Many-core algorithms for statistical phylogenetics. Bioinformatics. 25:1370-1376.
6. Swofford D.L. 2003. PAUP*: phylogenetic analysis using parsimony (* and other methods). Version 4. Sunderland (MA): Sinauer Associates.
7. Zwickl D.J. 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion [PhD dissertation]. Austin (TX): University of Texas. p. 1-115.