-
1
-
-
0001820740
-
Modified nucleosides at positions 34 and 37 of tRNAs and their predicted coding capacities
-
ed. Grosjean H, Benne R, American Society for Microbiology, Washington, DC
-
Björk GR. 1998. Modified nucleosides at positions 34 and 37 of tRNAs and their predicted coding capacities. In Modification and editing of RNA (ed. Grosjean H, Benne R), pp. 577-581. American Society for Microbiology, Washington, DC.
-
(1998)
Modification and Editing of RNA
, pp. 577-581
-
-
Björk, G.R.1
-
2
-
-
34248663955
-
The single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction: Twenty-something years on
-
Chomczynski P, Sacchi N. 2006. The single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction: Twenty-something years on. Nat Protoc 1:581-585.
-
(2006)
Nat Protoc
, vol.1
, pp. 581-585
-
-
Chomczynski, P.1
Sacchi, N.2
-
3
-
-
0025683270
-
Preparation and enzymatic hydrolysis of DNA and RNA for mass spectrometry
-
Crain PF. 1990. Preparation and enzymatic hydrolysis of DNA and RNA for mass spectrometry. Methods Enzymol 193:782-790.
-
(1990)
Methods Enzymol
, vol.193
, pp. 782-790
-
-
Crain, P.F.1
-
4
-
-
0013936167
-
Codon-anticodon pairing: The wobble hypothesis
-
Crick FH. 1966. Codon-anticodon pairing: The wobble hypothesis. J Mol Biol 19:548-555.
-
(1966)
J Mol Biol
, vol.19
, pp. 548-555
-
-
Crick, F.H.1
-
6
-
-
0017380076
-
Mapping adenines, guanines, and pyrimidines in RNA
-
Donis-Keller H, Maxam AM, Gilbert W. 1977. Mapping adenines, guanines, and pyrimidines in RNA. Nucleic Acids Res 4:2527-2538.
-
(1977)
Nucleic Acids Res
, vol.4
, pp. 2527-2538
-
-
Donis-Keller, H.1
Maxam, A.M.2
Gilbert, W.3
-
7
-
-
45849112155
-
A korarchaeal genome reveals insights into the evolution of the Archaea
-
Elkins JG, Podar M, Graham DE, Makarova KS, Wolf Y, Randau L, Hedlund BP, Brochier-Armanet C, Kunin V, Anderson I, et al. 2008. A korarchaeal genome reveals insights into the evolution of the Archaea. Proc Natl Acad Sci 105:8102-8107.
-
(2008)
Proc Natl Acad Sci
, vol.105
, pp. 8102-8107
-
-
Elkins, J.G.1
Podar, M.2
Graham, D.E.3
Makarova, K.S.4
Wolf, Y.5
Randau, L.6
Hedlund, B.P.7
Brochier-Armanet, C.8
Kunin, V.9
Anderson, I.10
-
8
-
-
79955718022
-
Life without the essential bacterial tRNA e-lysidine synthetase TilS: A case of tRNA gene recruitment in Bacillus subtilis
-
Fabret C, Dervyn E, Dalmais B, Guillot A, Marck C, Grosjean H, Noirot P. 2011. Life without the essential bacterial tRNA e - lysidine synthetase TilS: A case of tRNA gene recruitment in Bacillus subtilis. Mol Microbiol 80:1062-1074.
-
(2011)
Mol Microbiol
, vol.80
, pp. 1062-1074
-
-
Fabret, C.1
Dervyn, E.2
Dalmais, B.3
Guillot, A.4
Marck, C.5
Grosjean, H.6
Noirot, P.7
-
9
-
-
1842663082
-
Enzymatic conversion of cytidine to lysidine in anticodon of bacterial tRNA e-an alternative way of RNA editing
-
Grosjean H, Björk GR. 2004. Enzymatic conversion of cytidine to lysidine in anticodon of bacterial tRNA e-an alternative way of RNA editing. Trends Biochem Sci 29:165-168.
-
(2004)
Trends Biochem Sci
, vol.29
, pp. 165-168
-
-
Grosjean, H.1
Björk, G.R.2
-
10
-
-
0021153752
-
Halobacterium volcanii tRNAs. Identification of 41 tRNAs covering all amino acids, and the sequences of 33 class I tRNAs
-
Gupta R. 1984. Halobacterium volcanii tRNAs. Identification of 41 tRNAs covering all amino acids, and the sequences of 33 class I tRNAs. J Biol Chem 259:9461-9471.
-
(1984)
J Biol Chem
, vol.259
, pp. 9461-9471
-
-
Gupta, R.1
-
11
-
-
0022529031
-
Transfer RNAs of Halobacterium volcanii: Sequences of five leucine and three serine transfer RNAs
-
Gupta R. 1986. Transfer RNAs of Halobacterium volcanii: Sequences of five leucine and three serine transfer RNAs. Syst Appl Microbiol 7:102-105.
-
(1986)
Syst Appl Microbiol
, vol.7
, pp. 102-105
-
-
Gupta, R.1
-
12
-
-
0018787015
-
Rapid print-readout technique for sequencing of RNAs containing modified nucleotides
-
Gupta RC, Randerath K. 1979. Rapid print-readout technique for sequencing of RNAs containing modified nucleotides. Nucleic Acids Res 6:3443-3458.
-
(1979)
Nucleic Acids Res
, vol.6
, pp. 3443-3458
-
-
Gupta, R.C.1
Randerath, K.2
-
13
-
-
0015970544
-
Purification and characterization of AUA specific isoleucine transfer ribonucleic acid from Escherichia coli B
-
Harada F, Nishimura S. 1974. Purification and characterization of AUA specific isoleucine transfer ribonucleic acid from Escherichia coli B. Biochemistry 13:300-307.
-
(1974)
Biochemistry
, vol.13
, pp. 300-307
-
-
Harada, F.1
Nishimura, S.2
-
14
-
-
77949820848
-
Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea
-
Ikeuchi Y, Kimura S, Numata T, Nakamura D, Yokogawa T, Ogata T, Wada T, Suzuki T. 2010. Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea. Nat Chem Biol 6:277-282.
-
(2010)
Nat Chem Biol
, vol.6
, pp. 277-282
-
-
Ikeuchi, Y.1
Kimura, S.2
Numata, T.3
Nakamura, D.4
Yokogawa, T.5
Ogata, T.6
Wada, T.7
Suzuki, T.8
-
15
-
-
0009849775
-
Nucleic acid synthesis in the study of the genetic code
-
Elsevier, Amsterdam
-
Khorana HG. 1968. Nucleic acid synthesis in the study of the genetic code. In Nobel lectures. Elsevier, Amsterdam.
-
(1968)
Nobel Lectures
-
-
Khorana, H.G.1
-
16
-
-
38649140699
-
The many applications of acid urea polyacrylamide gel electrophoresis to studies of tRNAs and aminoacyl-tRNA synthetases
-
Köhrer C, RajBhandary UL. 2008. The many applications of acid urea polyacrylamide gel electrophoresis to studies of tRNAs and aminoacyl-tRNA synthetases. Methods 44:129-138.
-
(2008)
Methods
, vol.44
, pp. 129-138
-
-
Köhrer, C.1
Raj Bhandary, U.L.2
-
17
-
-
38049074880
-
Identification and characterization of a tRNA decoding the rare AUA codon in Haloarcula marismortui
-
Köhrer C, Srinivasan G, Mandal D, Mallick B, Ghosh Z, Chakrabarti J, RajBhandary UL. 2008. Identification and characterization of a tRNA decoding the rare AUA codon in Haloarcula marismortui. RNA 14:117-126.
-
(2008)
RNA
, vol.14
, pp. 117-126
-
-
Köhrer, C.1
Srinivasan, G.2
Mandal, D.3
Mallick, B.4
Ghosh, Z.5
Chakrabarti, J.6
Raj Bhandary, U.L.7
-
18
-
-
84896691906
-
Life without tRNA-lysidine synthetase: Translation of the isoleucine codon AUA in Bacillus subtilis lacking the canonical tRNA2 e
-
doi: 10.1093/nar/gkt1009
-
Köhrer C, Mandal D, Gaston KW, Grosjean H, Limbach PA, RajBhandary UL. 2013. Life without tRNA-lysidine synthetase: Translation of the isoleucine codon AUA in Bacillus subtilis lacking the canonical tRNA2 e. Nucleic Acids Res doi: 10.1093/nar/gkt1009.
-
(2013)
Nucleic Acids Res
-
-
Köhrer, C.1
Mandal, D.2
Gaston, K.W.3
Grosjean, H.4
Limbach, P.A.5
Raj Bhandary, U.L.6
-
20
-
-
33750993500
-
Systematic characterization of 2'-deoxynucleoside-5'-triphosphate analogs as substrates for DNA polymerases by polymerase chain reaction and kinetic studies on enzymatic production of modified DNA
-
Kuwahara M, Nagashima J, Hasegawa M, Tamura T, Kitagata R, Hanawa K, Hososhima S, Kasamatsu T, Ozaki H, Sawai H. 2006. Systematic characterization of 2'-deoxynucleoside-5'-triphosphate analogs as substrates for DNA polymerases by polymerase chain reaction and kinetic studies on enzymatic production of modified DNA. Nucleic Acids Res 34:5383-5394.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 5383-5394
-
-
Kuwahara, M.1
Nagashima, J.2
Hasegawa, M.3
Tamura, T.4
Kitagata, R.5
Hanawa, K.6
Hososhima, S.7
Kasamatsu, T.8
Ozaki, H.9
Sawai, H.10
-
21
-
-
0024706289
-
Shuttle vectors for the archaebacterium Halobacterium volcanii
-
Lam WL, Doolittle WF. 1989. Shuttle vectors for the archaebacterium Halobacterium volcanii. Proc Natl Acad Sci 86:5478-5482.
-
(1989)
Proc Natl Acad Sci
, vol.86
, pp. 5478-5482
-
-
Lam, W.L.1
Doolittle, W.F.2
-
22
-
-
0017923902
-
Sequence analysis of 5'[32P] labeled mRNA and tRNA using polyacrylamide gel electrophoresis
-
Lockard RE, Alzner-Deweerd B, Heckman JE, MacGee J, Tabor MW, RajBhandary UL. 1978. Sequence analysis of 5'[32P] labeled mRNA and tRNA using polyacrylamide gel electrophoresis. Nucleic Acids Res 5:37-56.
-
(1978)
Nucleic Acids Res
, vol.5
, pp. 37-56
-
-
Lockard, R.E.1
Alzner-Deweerd, B.2
Heckman, J.E.3
MacGee, J.4
Tabor, M.W.5
Raj Bhandary, U.L.6
-
23
-
-
77649263055
-
Agmatidine, a modified cytidine in the anticodon of archaeal tRNA e, base pairs with adenosine but not with guanosine
-
Mandal D, Köhrer C, Su D, Russell SP, Krivos K, Castleberry CM, Blum P, Limbach PA, Soll D, RajBhandary UL. 2010. Agmatidine, a modified cytidine in the anticodon of archaeal tRNA e, base pairs with adenosine but not with guanosine. Proc Natl Acad Sci 107:2872-2877.
-
(2010)
Proc Natl Acad Sci
, vol.107
, pp. 2872-2877
-
-
Mandal, D.1
Köhrer, C.2
Su, D.3
Russell, S.P.4
Krivos, K.5
Castleberry, C.M.6
Blum, P.7
Limbach, P.A.8
Soll, D.9
Raj Bhandary, U.L.10
-
24
-
-
0023734317
-
Codon and amino-acid specificities of a transfer RNA are both converted by a single post-transcriptional modification
-
Muramatsu T, Nishikawa K, Nemoto F, Kuchino Y, Nishimura S, Miyazawa T, Yokoyama S. 1988. Codon and amino-acid specificities of a transfer RNA are both converted by a single post-transcriptional modification. Nature 336:179-181.
-
(1988)
Nature
, vol.336
, pp. 179-181
-
-
Muramatsu, T.1
Nishikawa, K.2
Nemoto, F.3
Kuchino, Y.4
Nishimura, S.5
Miyazawa, T.6
Yokoyama, S.7
-
25
-
-
0014955806
-
Uridin-5-oxy acetic acid: A new minor constituent from E coli valine transfer RNA I
-
Murao K, Saneyoshi M, Harada F, Nishimura S. 1970. Uridin-5-oxy acetic acid: A new minor constituent from E. coli valine transfer RNA I. Biochem Biophys Res Commun 38:657-662.
-
(1970)
Biochem Biophys Res Commun
, vol.38
, pp. 657-662
-
-
Murao, K.1
Saneyoshi, M.2
Harada, F.3
Nishimura, S.4
-
26
-
-
0017104675
-
5-methoxyuridine: A new minor constituent located in the first position of the anticodon of tRNAAla, tRNAThr, and tRNAVal from Bacillus subtilis
-
Murao K, Hasegawa T, Ishikura H. 1976. 5-methoxyuridine: A new minor constituent located in the first position of the anticodon of tRNAAla, tRNAThr, and tRNAVal from Bacillus subtilis. Nucleic Acids Res 3:2851-2860.
-
(1976)
Nucleic Acids Res
, vol.3
, pp. 2851-2860
-
-
Murao, K.1
Hasegawa, T.2
Ishikura, H.3
-
27
-
-
0025674423
-
An expression vector for the archaebacterium Haloferax volcanii
-
Nieuwlandt DT, Daniels CJ. 1990. An expression vector for the archaebacterium Haloferax volcanii. J Bacteriol 172:7104-7110.
-
(1990)
J Bacteriol
, vol.172
, pp. 7104-7110
-
-
Nieuwlandt, D.T.1
Daniels, C.J.2
-
28
-
-
85014292389
-
The genetic code
-
Elsevier, Amsterdam
-
Nirenberg M. 1968. The genetic code. In Nobel lectures, Elsevier, Amsterdam.
-
(1968)
Nobel Lectures
-
-
Nirenberg, M.1
-
29
-
-
0002157687
-
Chromatographic mobilities of modified nucleotides
-
ed. Schimmel PR, Söll D, Abelson JN, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
-
Nishimura S. 1979. Chromatographic mobilities of modified nucleotides. In tRNA: Structure, properties, and recognition (ed. Schimmel PR, Söll D, Abelson JN), pp. 551-552. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
-
(1979)
TRNA: Structure, Properties, and Recognition
, pp. 551-552
-
-
Nishimura, S.1
-
30
-
-
79959287938
-
Biosynthesis and function of tRNA modifications in Archaea
-
Phillips G, De Crecy-Lagard V. 2011. Biosynthesis and function of tRNA modifications in Archaea. Curr Opin Microbiol 14:335-341.
-
(2011)
Curr Opin Microbiol
, vol.14
, pp. 335-341
-
-
Phillips, G.1
De Crecy-Lagard, V.2
-
31
-
-
0019206296
-
Recent developments in methods for RNA sequencing using in vitro 32P-labeling
-
Raj Bhandary UL. 1980. Recent developments in methods for RNA sequencing using in vitro 32P-labeling. Fed Proc 39:2815-2821.
-
(1980)
Fed Proc
, vol.39
, pp. 2815-2821
-
-
Raj Bhandary, U.L.1
-
32
-
-
0035793581
-
Importance of the anticodon sequence in the aminoacylation of tRNAs by methionyl-tRNA synthetase and by valyl-tRNA synthetase in an Archaebacterium
-
Ramesh V, Raj Bhandary UL. 2001. Importance of the anticodon sequence in the aminoacylation of tRNAs by methionyl-tRNA synthetase and by valyl-tRNA synthetase in an Archaebacterium. J Biol Chem 276:3660-3665.
-
(2001)
J Biol Chem
, vol.276
, pp. 3660-3665
-
-
Ramesh, V.1
Raj Bhandary, U.L.2
-
33
-
-
19444384556
-
The complete set of tRNA species in Nanoarchaeum equitans
-
Randau L, Pearson M, Söll D. 2005. The complete set of tRNA species in Nanoarchaeum equitans. FEBS Lett 579:2945-2947.
-
(2005)
FEBS Lett
, vol.579
, pp. 2945-2947
-
-
Randau, L.1
Pearson, M.2
Söll, D.3
-
34
-
-
0019245595
-
Synthesis and antiherpesviral activity of 5-C-substituted uracil nucleosides
-
Sakata S, Shibuya S, Machida H, Yoshino H, Hirota K, Senda S, Ikeda K, Mizuno Y. 1980. Synthesis and antiherpesviral activity of 5-C-substituted uracil nucleosides. Nucleic Acids Symp Ser 8:s39-s42.
-
(1980)
Nucleic Acids Symp Ser
, vol.8
-
-
Sakata, S.1
Shibuya, S.2
Machida, H.3
Yoshino, H.4
Hirota, K.5
Senda, S.6
Ikeda, K.7
Mizuno, Y.8
-
36
-
-
0030816674
-
The modified wobble base inosine in yeast tRNAIle is a positive determinant for aminoacylation by isoleucyl-tRNA synthetase
-
Senger B, Auxilien S, Englisch U, Cramer F, Fasiolo F. 1997. The modified wobble base inosine in yeast tRNAIle is a positive determinant for aminoacylation by isoleucyl-tRNA synthetase. Biochemistry 36:8269-8275.
-
(1997)
Biochemistry
, vol.36
, pp. 8269-8275
-
-
Senger, B.1
Auxilien, S.2
Englisch, U.3
Cramer, F.4
Fasiolo, F.5
-
37
-
-
0021876968
-
Characterization and crystallization of ribosomal particles from Halobacterium marismortui
-
Shevack A, Gewitz HS, Hennemann B, Yonath A, Wittmann HG. 1985. Characterization and crystallization of ribosomal particles from Halobacterium marismortui. FEBS Lett 184:68-71.
-
(1985)
FEBS Lett
, vol.184
, pp. 68-71
-
-
Shevack, A.1
Gewitz, H.S.2
Hennemann, B.3
Yonath, A.4
Wittmann, H.G.5
-
38
-
-
0018370853
-
Use of in vitro 32P labeling in the sequence analysis of nonradioactive tRNAs
-
Silberklang M, Gillum AM, Raj Bhandary UL. 1979. Use of in vitro 32P labeling in the sequence analysis of nonradioactive tRNAs. Methods Enzymol 59:58-109.
-
(1979)
Methods Enzymol
, vol.59
, pp. 58-109
-
-
Silberklang, M.1
Gillum, A.M.2
Raj Bhandary, U.L.3
-
39
-
-
0017672898
-
New rapid gel sequencing method for RNA
-
Simoncsits A, Brownlee GG, Brown RS, Rubin JR, Guilley H. 1977. New rapid gel sequencing method for RNA. Nature 269:833-836.
-
(1977)
Nature
, vol.269
, pp. 833-836
-
-
Simoncsits, A.1
Brownlee, G.G.2
Brown, R.S.3
Rubin, J.R.4
Guilley, H.5
-
40
-
-
0017822238
-
A different approach to RNA sequencing
-
Stanley J, Vassilenko S. 1978. A different approach to RNA sequencing. Nature 274:87-89.
-
(1978)
Nature
, vol.274
, pp. 87-89
-
-
Stanley, J.1
Vassilenko, S.2
-
41
-
-
34548767727
-
Chaplet column chromatography: Isolation of a large set of individual RNAs in a single step
-
Suzuki T, Suzuki T. 2007. Chaplet column chromatography: Isolation of a large set of individual RNAs in a single step. Methods Enzymol 425:231-239.
-
(2007)
Methods Enzymol
, vol.425
, pp. 231-239
-
-
Suzuki, T.1
Suzuki, T.2
-
42
-
-
84876349684
-
Decoding system for the AUA codonby tRNAIle with the UAU anticodon in Mycoplasma mobile
-
Taniguchi T, Miyauchi K, Nakane D, Miyata M, Muto A, Nishimura S, Suzuki T. 2013. Decoding system for the AUA codonby tRNAIle with the UAU anticodon in Mycoplasma mobile. Nucleic Acids Res 41:2621-2631.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 2621-2631
-
-
Taniguchi, T.1
Miyauchi, K.2
Nakane, D.3
Miyata, M.4
Muto, A.5
Nishimura, S.6
Suzuki, T.7
-
43
-
-
0026350896
-
Direct analysis of aminoacylation levels of tRNAs in vivo. Application to studying recognition of Escherichia coli initiator tRNA mutants by glutaminyl-tRNA synthetase
-
Varshney U, Lee CP, Raj Bhandary UL. 1991. Direct analysis of aminoacylation levels of tRNAs in vivo. Application to studying recognition of Escherichia coli initiator tRNA mutants by glutaminyl-tRNA synthetase. J Biol Chem 266:24712-24718.
-
(1991)
J Biol Chem
, vol.266
, pp. 24712-24718
-
-
Varshney, U.1
Lee, C.P.2
Raj Bhandary, U.L.3
-
44
-
-
0242300069
-
The genome of Nanoarchaeum equitans: Insights into early archaeal evolution and derived parasitism
-
Waters E, Hohn MJ, Ahel I, Graham DE, Adams MD, Barnstead M, Beeson KY, Bibbs L, Bolanos R, Keller M, et al. 2003. The genome of Nanoarchaeum equitans: Insights into early archaeal evolution and derived parasitism. Proc Natl Acad Sci 100:12984-12988.
-
(2003)
Proc Natl Acad Sci
, vol.100
, pp. 12984-12988
-
-
Waters, E.1
Hohn, M.J.2
Ahel, I.3
Graham, D.E.4
Adams, M.D.5
Barnstead, M.6
Beeson, K.Y.7
Bibbs, L.8
Bolanos, R.9
Keller, M.10
-
45
-
-
0002365884
-
Modified nucleosides and codon recognition
-
ed. Söll D, RajBhandary UL, American Society for Microbiology, Washington, DC
-
Yokoyama S, Nishimura S. 1995. Modified nucleosides and codon recognition. In tRNA: Structure, biosynthesis, and function (ed. Söll D, RajBhandary UL), pp. 207-223. American Society for Microbiology, Washington, DC.
-
(1995)
TRNA: Structure, Biosynthesis, and Function
, pp. 207-223
-
-
Yokoyama, S.1
Nishimura, S.2
|