메뉴 건너뛰기




Volumn 127, Issue 1, 2014, Pages 19-32

Association mapping, patterns of linkage disequilibrium and selection in the vicinity of the PHYTOCHROME C gene in pearl millet

Author keywords

[No Author keywords available]

Indexed keywords

GEMS; MARKOV CHAINS; PLANTS (BOTANY);

EID: 84892725592     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-013-2197-3     Document Type: Article
Times cited : (27)

References (43)
  • 1
    • 0034951820 scopus 로고    scopus 로고
    • Construction of a BAC library of pearl millet, Pennisetum glaucum
    • Allouis S, Qi X, Lindup S, Gale MD, Devos KM (2001) Construction of a BAC library of pearl millet, Pennisetum glaucum. Theor Appl Genet 102: 120-125.
    • (2001) Theor Appl Genet , vol.102 , pp. 120-125
    • Allouis, S.1    Qi, X.2    Lindup, S.3    Gale, M.D.4    Devos, K.M.5
  • 2
    • 84892692439 scopus 로고    scopus 로고
    • ASReml package for R (ASReml-R), version 20/32 (2011) VSN International Ltd, Hemel, Hempstead, HP1 1ES, UK
    • ASReml package for R (ASReml-R), version 20/32 (2011) VSN International Ltd, Hemel, Hempstead, HP1 1ES, UK.
  • 3
    • 77953233453 scopus 로고    scopus 로고
    • Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines
    • Atwell S, Huang YS, Vilhjalmsson BJ, Willems G, Horton M et al (2010) Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature 465: 627-631.
    • (2010) Nature , vol.465 , pp. 627-631
    • Atwell, S.1    Huang, Y.S.2    Vilhjalmsson, B.J.3    Willems, G.4    Horton, M.5
  • 4
    • 0036964474 scopus 로고    scopus 로고
    • Approximate Bayesian computation in population genetics
    • Beaumont MA, Zhang W, Balding DJ (2002) Approximate Bayesian computation in population genetics. Genetics 162: 2025-2035.
    • (2002) Genetics , vol.162 , pp. 2025-2035
    • Beaumont, M.A.1    Zhang, W.2    Balding, D.J.3
  • 6
    • 78549289532 scopus 로고    scopus 로고
    • Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana
    • Bergelson J, Roux F (2010) Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana. Nat Rev 11: 867-879.
    • (2010) Nat Rev , vol.11 , pp. 867-879
    • Bergelson, J.1    Roux, F.2
  • 7
    • 56049089634 scopus 로고    scopus 로고
    • Efficient mapping of plant height quantitative trait loci in a sorghum association population with introgressed dwarfing genes
    • Brown PJ, Rooney WL, Franks C, Kresovich S (2008) Efficient mapping of plant height quantitative trait loci in a sorghum association population with introgressed dwarfing genes. Genetics 180: 629-637.
    • (2008) Genetics , vol.180 , pp. 629-637
    • Brown, P.J.1    Rooney, W.L.2    Franks, C.3    Kresovich, S.4
  • 8
    • 58149346217 scopus 로고    scopus 로고
    • Patterns of molecular evolution associated with two selective sweeps in the Tb1-Dwarf8 region in maize
    • Camus-Kulandaivelu L, Chevin LM, Tollon-Cordet C, Charcosset A, Manicacci D et al (2008) Patterns of molecular evolution associated with two selective sweeps in the Tb1-Dwarf8 region in maize. Genetics 180: 1107-1121.
    • (2008) Genetics , vol.180 , pp. 1107-1121
    • Camus-Kulandaivelu, L.1    Chevin, L.M.2    Tollon-Cordet, C.3    Charcosset, A.4    Manicacci, D.5
  • 9
    • 84858383953 scopus 로고    scopus 로고
    • Evolutionary history of pearl millet (Pennisetum glaucum [L.] R. Br.) and selection on flowering genes since its domestication
    • Clotault J, Thuillet A-C, Buiron M, De Mita S, Couderc M et al (2012) Evolutionary history of pearl millet (Pennisetum glaucum [L.] R. Br.) and selection on flowering genes since its domestication. Mol Biol Evol 29: 1199-1212.
    • (2012) Mol Biol Evol , vol.29 , pp. 1199-1212
    • Clotault, J.1    Thuillet, A.-C.2    Buiron, M.3    De Mita, S.4    Couderc, M.5
  • 10
    • 45849140908 scopus 로고    scopus 로고
    • Key impact of Vgt1 on flowering time adaptation in maize: evidence from association mapping and ecogeographical information
    • Ducrocq S, Madur D, Veyrieras JB, Camus-Kulandaivelu L, Kloiber-Maitz M et al (2008) Key impact of Vgt1 on flowering time adaptation in maize: evidence from association mapping and ecogeographical information. Genetics 178: 2433-2437.
    • (2008) Genetics , vol.178 , pp. 2433-2437
    • Ducrocq, S.1    Madur, D.2    Veyrieras, J.B.3    Camus-Kulandaivelu, L.4    Kloiber-Maitz, M.5
  • 12
    • 0033911640 scopus 로고    scopus 로고
    • Hitchhiking under positive darwinian selection
    • Fay JC, Wu C-I (2000) Hitchhiking under positive darwinian selection. Genetics 155: 1405-1413.
    • (2000) Genetics , vol.155 , pp. 1405-1413
    • Fay, J.C.1    Wu, C.-I.2
  • 14
    • 84892772407 scopus 로고    scopus 로고
    • GRAMENE release 32, (Access Online: November 2010)
    • GRAMENE release 32 (2010) http://www. gramene. org/ (Access Online: November 2010).
    • (2010)
  • 15
    • 19644371954 scopus 로고    scopus 로고
    • Molecular analysis reveals tighter social regulation of immigration in patrilocal populations than in matrilocal populations
    • Hamilton G, Stoneking M, Excoffier L (2005) Molecular analysis reveals tighter social regulation of immigration in patrilocal populations than in matrilocal populations. Proc Natl Acad Sci USA 102: 7476.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 7476
    • Hamilton, G.1    Stoneking, M.2    Excoffier, L.3
  • 16
    • 0036899010 scopus 로고    scopus 로고
    • SPAGeDi: a versatile computer program to analyze spatial genetic structure at the individual or population levels
    • Hardy OJ, Vekemans X (2002) SPAGeDi: a versatile computer program to analyze spatial genetic structure at the individual or population levels. Mol Ecol Notes 2: 618-620.
    • (2002) Mol Ecol Notes , vol.2 , pp. 618-620
    • Hardy, O.J.1    Vekemans, X.2
  • 17
    • 70350188990 scopus 로고    scopus 로고
    • Multiplication and preliminary characterization of West and Central African pearl millet landraces
    • Haussmann BIG, Boubacar A, Boureima SS, Vigouroux Y (2006) Multiplication and preliminary characterization of West and Central African pearl millet landraces. Int Sorghum Millet Newsl 47: 110-112.
    • (2006) Int Sorghum Millet Newsl , vol.47 , pp. 110-112
    • Haussmann, B.I.G.1    Boubacar, A.2    Boureima, S.S.3    Vigouroux, Y.4
  • 18
    • 0026709389 scopus 로고
    • Estimation of levels of gene flow from DNA sequence data
    • Hudson RR, Slatkin M, Maddison WP (1992) Estimation of levels of gene flow from DNA sequence data. Genetics 132: 583-589.
    • (1992) Genetics , vol.132 , pp. 583-589
    • Hudson, R.R.1    Slatkin, M.2    Maddison, W.P.3
  • 19
    • 0030873114 scopus 로고    scopus 로고
    • A test of neutrality based on interlocus associations
    • Kelly JK (1997) A test of neutrality based on interlocus associations. Genetics 146: 1197-1206.
    • (1997) Genetics , vol.146 , pp. 1197-1206
    • Kelly, J.K.1
  • 20
    • 84861005401 scopus 로고    scopus 로고
    • Evolution of neutral and flowering genes along pearl millet (Pennisetum glaucum) domestication
    • Lakis G, Navascués M, Rekima S, Simon M, Remigereau M-S et al (2012) Evolution of neutral and flowering genes along pearl millet (Pennisetum glaucum) domestication. PLoS One 7: e36642.
    • (2012) PLoS One , vol.7
    • Lakis, G.1    Navascués, M.2    Rekima, S.3    Simon, M.4    Remigereau, M.-S.5
  • 22
    • 33751253117 scopus 로고    scopus 로고
    • Diversity of wild and cultivated pearl millet accessions (Pennisetum glaucum [L] R. Br.) in Niger assessed by microsatellite markers
    • Mariac C, Luong V, Kapran I, Mamadou A, Sagnard F et al (2006) Diversity of wild and cultivated pearl millet accessions (Pennisetum glaucum [L] R. Br.) in Niger assessed by microsatellite markers. Theor Appl Genet 114: 49-58.
    • (2006) Theor Appl Genet , vol.114 , pp. 49-58
    • Mariac, C.1    Luong, V.2    Kapran, I.3    Mamadou, A.4    Sagnard, F.5
  • 23
    • 78650680773 scopus 로고    scopus 로고
    • Genetic basis of pearl millet population adaptation along an environmental gradient investigated by a combination of genome scan and association mapping
    • Mariac C, Jehin L, Saïdou AA, Thuillet A-C, Couderc M et al (2011) Genetic basis of pearl millet population adaptation along an environmental gradient investigated by a combination of genome scan and association mapping. Mol Ecol 20: 81-91.
    • (2011) Mol Ecol , vol.20 , pp. 81-91
    • Mariac, C.1    Jehin, L.2    Saïdou, A.A.3    Thuillet, A.-C.4    Couderc, M.5
  • 24
    • 69949135484 scopus 로고    scopus 로고
    • Association mapping: critical considerations shift from genotyping to experimental design
    • Myles S, Peiffer J, Brown PJ, Ersoz ES, Zhang Z et al (2009) Association mapping: critical considerations shift from genotyping to experimental design. Plant Cell 21: 2194-2202.
    • (2009) Plant Cell , vol.21 , pp. 2194-2202
    • Myles, S.1    Peiffer, J.2    Brown, P.J.3    Ersoz, E.S.4    Zhang, Z.5
  • 26
    • 48149102865 scopus 로고    scopus 로고
    • Phylogeny and origin of pearl millet (Pennisetum glaucum [L] R. Br.) as revealed by microsatellite loci
    • Oumar I, Mariac C, Pham J-L, Vigouroux Y (2008) Phylogeny and origin of pearl millet (Pennisetum glaucum [L] R. Br.) as revealed by microsatellite loci. Theor Appl Genet 117: 489-497.
    • (2008) Theor Appl Genet , vol.117 , pp. 489-497
    • Oumar, I.1    Mariac, C.2    Pham, J.-L.3    Vigouroux, Y.4
  • 27
    • 77954714407 scopus 로고    scopus 로고
    • msABC: a modification of Hudson's ms to facilitate multi-locus ABC analysis
    • Pavlidis P, Laurent S, Stephan W (2010) msABC: a modification of Hudson's ms to facilitate multi-locus ABC analysis. Mol Ecol Resour 10: 723-727.
    • (2010) Mol Ecol Resour , vol.10 , pp. 723-727
    • Pavlidis, P.1    Laurent, S.2    Stephan, W.3
  • 29
    • 77951183639 scopus 로고    scopus 로고
    • Association genetics in crop improvement
    • Rafalski JA (2010) Association genetics in crop improvement. Curr Opin Plant Biol 13: 1-7.
    • (2010) Curr Opin Plant Biol , vol.13 , pp. 1-7
    • Rafalski, J.A.1
  • 30
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analyses by the coalescent and other methods
    • Rozas J, Sanchez-DelBarrio JC, Messeguer X, Rozas R (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Sanchez-DelBarrio, J.C.2    Messeguer, X.3    Rozas, R.4
  • 31
    • 70349333177 scopus 로고    scopus 로고
    • Association studies identify natural variation at PHYC linked to flowering time and morphological variation in pearl millet
    • Saïdou A-A, Mariac C, Luong V, Pham J-L, Bezancon G et al (2009) Association studies identify natural variation at PHYC linked to flowering time and morphological variation in pearl millet. Genetics 182: 899-910.
    • (2009) Genetics , vol.182 , pp. 899-910
    • Saïdou, A.-A.1    Mariac, C.2    Luong, V.3    Pham, J.-L.4    Bezancon, G.5
  • 33
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 34
    • 3042595170 scopus 로고    scopus 로고
    • Selection versus demography: a multilocus investigation of the domestication process in maize
    • Tenaillon MI, U'Ren J, Tenaillon O, Gaut BS (2004) Selection versus demography: a multilocus investigation of the domestication process in maize. Mol Biol Evol 21: 1214-1225.
    • (2004) Mol Biol Evol , vol.21 , pp. 1214-1225
    • Tenaillon, M.I.1    U'Ren, J.2    Tenaillon, O.3    Gaut, B.S.4
  • 36
    • 67749135914 scopus 로고    scopus 로고
    • Automating approximate Bayesian computation by local linear regression
    • Thornton K (2009) Automating approximate Bayesian computation by local linear regression. BMC Genet 10: 35.
    • (2009) BMC Genet , vol.10 , pp. 35
    • Thornton, K.1
  • 37
    • 79251561130 scopus 로고    scopus 로고
    • Genome-wide association study of leaf architecture in the maize nested association mapping population
    • Tian F, Bradbury PJ, Brown PJ, Hung H, Sun Q et al (2011) Genome-wide association study of leaf architecture in the maize nested association mapping population. Nat Genet 43: 159-162.
    • (2011) Nat Genet , vol.43 , pp. 159-162
    • Tian, F.1    Bradbury, P.J.2    Brown, P.J.3    Hung, H.4    Sun, Q.5
  • 38
    • 0037162474 scopus 로고    scopus 로고
    • Identifying genes of agronomic importance in maize by screening microsatellites for evidence of selection during domestication
    • Vigouroux Y, McMullen M, Hittinger CT, Houchins K, Schulz L et al (2002) Identifying genes of agronomic importance in maize by screening microsatellites for evidence of selection during domestication. Proc Natl Acad Sci USA 99: 9650-9655.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 9650-9655
    • Vigouroux, Y.1    McMullen, M.2    Hittinger, C.T.3    Houchins, K.4    Schulz, L.5
  • 39
    • 79955787157 scopus 로고    scopus 로고
    • Selection for earlier flowering crop associated to climatic variations in the Sahel
    • Vigouroux Y, Mariac C, Pham J-L, Gérard B, Kapran I et al (2011) Selection for earlier flowering crop associated to climatic variations in the Sahel. PLoS One 6: e19563.
    • (2011) PLoS One , vol.6
    • Vigouroux, Y.1    Mariac, C.2    Pham, J.-L.3    Gérard, B.4    Kapran, I.5
  • 40
    • 0016491430 scopus 로고
    • On the number of segregating sites in genetical models without recombination
    • Watterson GA (1975) On the number of segregating sites in genetical models without recombination. Theor Pop Biol 7: 256-276.
    • (1975) Theor Pop Biol , vol.7 , pp. 256-276
    • Watterson, G.A.1
  • 41
    • 33744980661 scopus 로고    scopus 로고
    • Genetic association mapping and genome organization of maize
    • Yu J, Buckler ES (2006) Genetic association mapping and genome organization of maize. Curr Opin Biotech 17: 155-160.
    • (2006) Curr Opin Biotech , vol.17 , pp. 155-160
    • Yu, J.1    Buckler, E.S.2
  • 42
    • 31744440502 scopus 로고    scopus 로고
    • A unified mixed-model method for association mapping that accounts for multiple levels of relatedness
    • Yu J, Pressoir G, Briggs WH, Bi IV, Yamasaki M et al (2006) A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet 38: 203-208.
    • (2006) Nat Genet , vol.38 , pp. 203-208
    • Yu, J.1    Pressoir, G.2    Briggs, W.H.3    Bi, I.V.4    Yamasaki, M.5
  • 43
    • 85164502327 scopus 로고    scopus 로고
    • Status and prospects of association mapping in plants
    • Zhu C, Gore M, Buckler ES, Yu J (2008) Status and prospects of association mapping in plants. Plant Genome 1: 5-20.
    • (2008) Plant Genome , vol.1 , pp. 5-20
    • Zhu, C.1    Gore, M.2    Buckler, E.S.3    Yu, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.