메뉴 건너뛰기




Volumn 10, Issue , 2009, Pages

Automating approximate Bayesian computation by local linear regression

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; AUTOMATION; BAYESIAN LEARNING; COMPUTER SIMULATION; DATA ANALYSIS SOFTWARE; DOCUMENTATION; DROSOPHILA MELANOGASTER; GENETIC TRANSFORMATION; LINEAR REGRESSION ANALYSIS; METHODOLOGY; NONHUMAN; ONLINE SYSTEM; ANIMAL; BAYES THEOREM; BIOLOGY; COMPUTER PROGRAM; GENETICS; POPULATION GENETICS; STATISTICAL MODEL;

EID: 67749135914     PISSN: None     EISSN: 14712156     Source Type: Journal    
DOI: 10.1186/1471-2156-10-35     Document Type: Article
Times cited : (37)

References (29)
  • 1
    • 0028782096 scopus 로고
    • Sampling theory for neutral alleles in a varying environment
    • 10.1098/rstb.1994.0079
    • Griffiths RC Tavare S Sampling theory for neutral alleles in a varying environment Philosophical transactions: Biological sciences 1994, 334:403-410. 10.1098/rstb.1994.0079
    • (1994) Philosophical Transactions: Biological Sciences , vol.334 , pp. 403-410
    • Griffiths, R.C.1    Tavare, S.2
  • 2
    • 33847253975 scopus 로고    scopus 로고
    • Improved integration with the Felsenstein equation for improved Marcov Chain Monte Carlo methods in population genetics
    • 1815259 17301231 10.1073/pnas.0611164104
    • Hey J Nielsen R Improved integration with the Felsenstein equation for improved Marcov Chain Monte Carlo methods in population genetics PNAS 2007, 104:2785-2790. 1815259 17301231 10.1073/pnas.0611164104
    • (2007) PNAS , vol.104 , pp. 2785-2790
    • Hey, J.1    Nielsen, R.2
  • 3
    • 0026460082 scopus 로고
    • Population genetics of polymorphism and divergence
    • 1205236 1459433
    • Sawyer S Hartl DL Population genetics of polymorphism and divergence Genetics 1992, 132:1161-1176. 1205236 1459433
    • (1992) Genetics , vol.132 , pp. 1161-1176
    • Sawyer, S.1    Hartl, D.L.2
  • 4
    • 5144231907 scopus 로고    scopus 로고
    • Population Genetics of Polymorphism and Divergence for Diploid Selection Models With Arbitrary Dominance
    • 1448126 15454557 10.1534/genetics.103.024745
    • Williamson S Fledel-Alon A Bustamante CD Population Genetics of Polymorphism and Divergence for Diploid Selection Models With Arbitrary Dominance Genetics 2004, 168:463-475. 1448126 15454557 10.1534/ genetics.103.024745
    • (2004) Genetics , vol.168 , pp. 463-475
    • Williamson, S.1    Fledel-Alon, A.2    Bustamante, C.D.3
  • 5
    • 0031827528 scopus 로고    scopus 로고
    • Inference of Population History Using a Likelihood Approach
    • 1460236 9649540
    • Weiss G von Haeseler A Inference of Population History Using a Likelihood Approach Genetics 1998, 149:1539-1546. 1460236 9649540
    • (1998) Genetics , vol.149 , pp. 1539-1546
    • Weiss, G.1    von Haeseler, A.2
  • 6
    • 0033955443 scopus 로고    scopus 로고
    • A comparison of estimators of the population recombination rate
    • 10666715
    • Wall JD A comparison of estimators of the population recombination rate Mol Biol Evol 2000, 17(1):156-163. 10666715
    • (2000) Mol Biol Evol , vol.17 , Issue.1 , pp. 156-163
    • Wall, J.D.1
  • 7
    • 0029820359 scopus 로고    scopus 로고
    • Estimating the age of the common ancestor of a DNA sample using the number of segregating sites
    • 1207573 8889543
    • Fu YX Estimating the age of the common ancestor of a DNA sample using the number of segregating sites Genetics 1996, 144:829-838. 1207573 8889543
    • (1996) Genetics , vol.144 , pp. 829-838
    • Fu, Y.X.1
  • 8
    • 0032735986 scopus 로고    scopus 로고
    • Population growth of human Y chromosomes: A study of Y chromosome microsatellites
    • 10605120
    • Pritchard JK Seielstad MT Perez-Lezaun A Feldman MW Population growth of human Y chromosomes: A study of Y chromosome microsatellites Mol Biol Evol 1999, 16(12):1791-1798. 10605120
    • (1999) Mol Biol Evol , vol.16 , Issue.12 , pp. 1791-1798
    • Pritchard, J.K.1    Seielstad, M.T.2    Perez-Lezaun, A.3    Feldman, M.W.4
  • 9
    • 0041817545 scopus 로고    scopus 로고
    • Estimating the time since the fixation of a beneficial allele
    • 1462667 12930770
    • Przeworski M Estimating the time since the fixation of a beneficial allele Genetics 2003, 164:1667-1676. 1462667 12930770
    • (2003) Genetics , vol.164 , pp. 1667-1676
    • Przeworski, M.1
  • 10
    • 22344444998 scopus 로고    scopus 로고
    • Multilocus patterns of nucleotide variability and the demographic and selection history of Drosophila melanogaster populations
    • 1142469 15930491 10.1101/gr.3541005
    • Haddrill P Thornton K Andolfatto P Charlesworth B Multilocus patterns of nucleotide variability and the demographic and selection history of Drosophila melanogaster populations Genome Research 2005, 15:790-799. 1142469 15930491 10.1101/gr.3541005
    • (2005) Genome Research , vol.15 , pp. 790-799
    • Haddrill, P.1    Thornton, K.2    Andolfatto, P.3    Charlesworth, B.4
  • 11
    • 33644763127 scopus 로고    scopus 로고
    • Approximate Bayesian Inference reveals evidence for a recent, severe, bottleneck in a Netherlands population of Drosophila melanogaster
    • 1456302 16299396 10.1534/genetics.105.048223
    • Thornton K Andolfatto P Approximate Bayesian Inference reveals evidence for a recent, severe, bottleneck in a Netherlands population of Drosophila melanogaster Genetics 2006, 172:1607-1619. 1456302 16299396 10.1534/genetics.105.048223
    • (2006) Genetics , vol.172 , pp. 1607-1619
    • Thornton, K.1    Andolfatto, P.2
  • 12
    • 0036964474 scopus 로고    scopus 로고
    • Approximate Bayesian Computation in Population Genetics
    • 1462356 12524368
    • Beaumont MA Zhang W Balding DJ Approximate Bayesian Computation in Population Genetics Genetics 2002, 162:2025-2035. 1462356 12524368
    • (2002) Genetics , vol.162 , pp. 2025-2035
    • Beaumont, M.A.1    Zhang, W.2    Balding, D.J.3
  • 14
    • 33846939958 scopus 로고    scopus 로고
    • Sequential Monte Carlo without likelihoods
    • 1794282 17264216 10.1073/pnas.0607208104
    • Sisson SA Fan Y Tanaka MM Sequential Monte Carlo without likelihoods PNAS 2007, 104:1760-1765. 1794282 17264216 10.1073/pnas.0607208104
    • (2007) PNAS , vol.104 , pp. 1760-1765
    • Sisson, S.A.1    Fan, Y.2    Tanaka, M.M.3
  • 15
    • 51449104123 scopus 로고    scopus 로고
    • Approximately sufficient statistics in Bayesian computation
    • Article26 18764775
    • Joyce P Marjoram P Approximately sufficient statistics in Bayesian computation Stat Appl Genet Mol Biol 2008, 7(1):ARticle26. 18764775
    • (2008) Stat Appl Genet Mol Biol , vol.7 , Issue.1
    • Joyce, P.1    Marjoram, P.2
  • 16
    • 58149142997 scopus 로고    scopus 로고
    • Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems
    • 10.1098/rsif.2008.0172 19205079
    • Toni T Welch D Strelkowa N Ipsen A Stumpf MPH Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems J R Soc Interface 2009, 6:187-202. 10.1098/ rsif.2008.0172 19205079
    • (2009) J R Soc Interface , vol.6 , pp. 187-202
    • Toni, T.1    Welch, D.2    Strelkowa, N.3    Ipsen, A.4    Stumpf, M.P.H.5
  • 17
    • 27544474343 scopus 로고    scopus 로고
    • Recombination and the properties of Tajima's D in the context of approximate likelihood calculation
    • 1456134 15998723 10.1534/genetics.105.043786
    • Thornton K Recombination and the properties of Tajima's D in the context of approximate likelihood calculation Genetics 2005, 171:2143-2148. 1456134 15998723 10.1534/genetics.105.043786
    • (2005) Genetics , vol.171 , pp. 2143-2148
    • Thornton, K.1
  • 18
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model of genetic variation
    • 10.1093/bioinformatics/18.2.337 11847089
    • Hudson RR Generating samples under a Wright-Fisher neutral model of genetic variation Bioinformatics 2002, 18:337-338. 10.1093/ bioinformatics/18.2.337 11847089
    • (2002) Bioinformatics , vol.18 , pp. 337-338
    • Hudson, R.R.1
  • 19
    • 4644246155 scopus 로고    scopus 로고
    • Ancestral inference on gene trees under selection
    • 10.1016/j.tpb.2004.06.006 15465123
    • Coop G Griffiths RC Ancestral inference on gene trees under selection Theoretical Population Biology 2004, 66:219-232. 10.1016/ j.tpb.2004.06.006 15465123
    • (2004) Theoretical Population Biology , vol.66 , pp. 219-232
    • Coop, G.1    Griffiths, R.C.2
  • 20
    • 34247891656 scopus 로고    scopus 로고
    • Controlling the false positive rate in multilocus genome scans for selection
    • 1800626 17110489 10.1534/genetics.106.064642
    • Thornton K Jensen JD Controlling the false positive rate in multilocus genome scans for selection Genetics 2007, 175:737-750. 1800626 17110489 10.1534/genetics.106.064642
    • (2007) Genetics , vol.175 , pp. 737-750
    • Thornton, K.1    Jensen, J.D.2
  • 21
    • 0344464730 scopus 로고    scopus 로고
    • libsequence: A C++ class library for evolutionary genetic analysis
    • 10.1093/bioinformatics/btg316 14630667
    • Thornton K libsequence: A C++ class library for evolutionary genetic analysis Bioinformatics 2003, 19:2325-2327. 10.1093/bioinformatics/ btg316 14630667
    • (2003) Bioinformatics , vol.19 , pp. 2325-2327
    • Thornton, K.1
  • 22
    • 1842607847 scopus 로고    scopus 로고
    • R Development Core Team R Foundation for Statistical Computing, Vienna, Austria
    • R Development Core Team R: A language and environment for statistical computing R Foundation for Statistical Computing, Vienna, Austria 2004. http://www.R-project.org
    • (2004) R: A Language and Environment for Statistical Computing
  • 24
    • 19644371954 scopus 로고    scopus 로고
    • Molecular analysis reveals tighter social regulation of immigration in patrilocal populations than in matrilocal populations
    • 10.1073/pnas.0409253102
    • Hamilton G Stoneking M Excoffier L Molecular analysis reveals tighter social regulation of immigration in patrilocal populations than in matrilocal populations PNAS 2005, 102:746-7480. 10.1073/pnas.0409253102
    • (2005) PNAS , vol.102 , pp. 746-7480
    • Hamilton, G.1    Stoneking, M.2    Excoffier, L.3
  • 25
    • 0347065347 scopus 로고    scopus 로고
    • Demography and natural selection have shaped genetic variation in Drosophila melanogaster: A multi-locus approach
    • 1462856 14668381
    • Glinka S Ometto L Mousset S Stephan W DeLorenzo D Demography and natural selection have shaped genetic variation in Drosophila melanogaster: A multi-locus approach Genetics 2003, 165:1269-1278. 1462856 14668381
    • (2003) Genetics , vol.165 , pp. 1269-1278
    • Glinka, S.1    Ometto, L.2    Mousset, S.3    Stephan, W.4    DeLorenzo, D.5
  • 26
    • 0021066244 scopus 로고
    • Evolutionary relationship of DNA sequences in finite populations
    • 1202167 6628982
    • Tajima F Evolutionary relationship of DNA sequences in finite populations Genetics 1983, 105:437-460. 1202167 6628982
    • (1983) Genetics , vol.105 , pp. 437-460
    • Tajima, F.1
  • 27
    • 34547737972 scopus 로고    scopus 로고
    • Compound Tests for the Detection of Hitchhiking Under Positive Selection
    • 10.1093/molbev/msm119
    • Zeng K Shi S Wu CI Compound Tests for the Detection of Hitchhiking Under Positive Selection Molecular Biology and Evolution 2007, 24:1898-1908. 10.1093/molbev/msm119
    • (2007) Molecular Biology and Evolution , vol.24 , pp. 1898-1908
    • Zeng, K.1    Shi, S.2    Wu, C.I.3
  • 28
    • 33947673770 scopus 로고    scopus 로고
    • Greenwood Village, Colorado: Roberts & Company Publishers
    • Wakeley J Coalescent Theory: An Introduction Greenwood Village, Colorado: Roberts & Company Publishers 2009.
    • (2009) Coalescent Theory: An Introduction
    • Wakeley, J.1
  • 29
    • 0023339852 scopus 로고
    • A test of neutral molecular evolution based on nucleotide data
    • 1203113 3110004
    • Hudson RR Kreitman M Aguade M A test of neutral molecular evolution based on nucleotide data Genetics 1987, 116:153-159. 1203113 3110004
    • (1987) Genetics , vol.116 , pp. 153-159
    • Hudson, R.R.1    Kreitman, M.2    Aguade, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.