Characterization of the aap1 gene of Agaricus bisporus, a homolog of the yeast YAP1

Comptes Rendus - Biologies

Volumn 337, Issue 1, 2014, Pages 29-43

  Navarro, Pilar ^a,b   Billette, Christophe ^a   Ferrer, Nathalie ^a   Savoie, Jean Michel ^a  

^a CEMAGREF   (France)

^b UNIVERSIDAD VERACRUZANA   (Mexico)

Author keywords

AP 1 like transcription factor; bZIP; Mushroom; Temperature adaptation; Yap transcription factor

Indexed keywords

TRANSCRIPTION FACTOR YAP1;

FRUITING; GENE; GENE EXPRESSION; GENETIC DIFFERENTIATION; MUSHROOM; POLYMORPHISM; PROTEIN; TEMPERATURE; YEAST;

AAP1 GENE; AGARICUS BISPORUS; ARTICLE; CONTROLLED STUDY; DNA POLYMORPHISM; FRUITING BODY; FUNGAL GENE; FUNGAL STRAIN; FUNGUS CULTURE; FUNGUS GROWTH; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE STRUCTURE; GENETIC ANALYSIS; MYCELIAL GROWTH; MYCELIUM; NONHUMAN; OXIDATION REDUCTION STATE; REAL TIME POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; STRESS; TEMPERATURE;

AGARICUS BISPORUS; BASIDIOMYCOTA;

ADAPTATION À LA TEMPÉRATURE; AP-1-LIKE TRANSCRIPTION FACTOR; BZIP; CHAMPIGNON DE COUCHE; FACTEUR DE TRANSCRIPTION DE TYPE AP-1; FACTEUR DE TRANSCRIPTION YAP; MUSHROOM; TEMPERATURE ADAPTATION; YAP TRANSCRIPTION FACTOR;

AGARICUS; AMINO ACID SEQUENCE; DNA, FUNGAL; FRUITING BODIES, FUNGAL; FUNGAL PROTEINS; GENES, FUNGAL; HOT TEMPERATURE; MOLECULAR SEQUENCE DATA; MYCELIUM; POLYMORPHISM, GENETIC; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SPORES, FUNGAL; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

EID: 84892674395     PISSN: 16310691     EISSN: 17683238     Source Type: Journal    
DOI: 10.1016/j.crvi.2013.10.010     Document Type: Article

References (56)

1. P. Callac, C. Billette, M. Imbernon, and R.W. Kerrigan Morphological, genetic, and interfertility analyses reveal a novel, tetrasporic variety of Agaricus bisporus from the sonoran desert of California Mycologia 85 5 1993 835 851 (Pubitemid 2013132)
2. P. Callac, I. Jacob de Haut, M. Imbernon, J. Guimberteau, C. Desmerger, and I. Theochari A novel homothallic variety of Agaricus bisporus comprises rare tetrasporic isolates from Europe Mycologia 95 2 2003 222 231 (Pubitemid 36557821)
3. M.L. Largeteau, P. Callac, A.M. Navarro-Rodriguez, and J.M. Savoie Diversity in the ability of Agaricus bisporus wild isolates to fruit at high temperature (25 C) Fungal Biol. 115 11 2011 1186 1195
4. Y. Sakamoto Protein expression during Flammulina velutipes fruiting body formation Mycoscience 51 2010 163 169
5. H. Tonomura Flammulina velutipes S.T.C.a.W.A. Hayes, Biology and cultivation of edible mushrooms 1978 Academic Press New York 409 421
6. S.A. Fultz Fruiting at high temperature and its genetic control in the basidiomycete Flammulina velutipes Appl. Environ. Microbiol. 54 10 1988 2460 2463
7. K. Lin-Zhi, H. Fei, L. Jun-Fang, G. Li-Qiong, and B. Wei-Fang Breeding of new high-temperature-tolerant strains of Flammulina velutipes Sci. Horticulturae 151 0 2013 97 102
8. M. Montero-Barrientos, R. Hermosa, C. Nicolas, R.E. Cardoza, S. Gutierrez, and E. Monte Overexpression of a Trichoderma HSP70 gene increases fungal resistance to heat and other abiotic stresses Fungal Genet. Biol. 45 11 2008 1506 1513
9. M.I. Hamid, F. Zeng, J. Cheng, D. Jiang, and Y. Fu Disruption of heat shock factor 1 reduces the formation of conidia and thermotolerance in the mycoparasitic fungus Coniothyrium minitans Fungal Genet. Biol. 53 2013 42 49
10. R. Chen, L.F. Chen, and S.Y. Song Identification of two thermotolerance-related genes in Agaricus bisporus Food Technol. Biotechnol. 41 4 2003 339 344 (Pubitemid 37539058)
11. Z.S. Wang, L.F. Chen, and M.Y. Chen Study on the thermotolerance related genes of Agaricus bisporus Mycosystema 22 Suppl. 2003 325 328
12. Z.S. Wang, L.F. Chen, and M.Y. Chen Thermotolerance-related genes in Agaricus bisporus P. Romaine, Science and cultivation of edible and medicinal fungi: Mushroom Science XVI 2004 PennState University 133 137
13. M.Y. Chen, Z.S. Wang, J.H. Liao, Z.D. Lu, Z.G. Guo, and H.G. Li Full-length cDNA sequence of a gene related to the thermo-tolerance of Agaricus bisporus Acta Edulis Fungi 12 2005 85 88
14. M.Y. Chen, J.H. Liao, Z.J. Guo, H.R. Li, Z.H. Lu, D.F. Cai, and Z.S. Wang The expression vector construction and transformation of thermo-tolerance- related gene of Agaricus bisporus Mycosystema 28 2009 797 801
15. M.Y. Chen, Z. Wang, J.H. Liao, Z.D. Lu, Z.G. Guo, and H.G. Li Cloning and sequencing of gene 028-1 related to the thermo-tolerance of Agaricus bisporus M. van Gruening, Science and cultivation of edible and medicinal fungi: Mushroom Science XVII 2008 South African Mushroom Farmers Association Pretoria 159 165
16. W. Lee, A. Haslinger, M. Karin, and R. Tjian Activation of transcription by 2 factors that bind promoter and enhancer sequences of the human metallothionein gene and SV40 Nature 325 6102 1987 368 372 (Pubitemid 17053180)
17. C.A. Rodrigues-Pousada, T. Nevitt, R. Menezes, D. Azevedo, J. Pereira, and C. Amaral Yeast activator proteins and stress response: an overview FEBS Lett. 567 1 2004 80 85 (Pubitemid 38686427)
18. A.W. Reinke, J. Baek, O. Ashenberg, and A.E. Keating Networks of bZIP protein-protein interactions diversified over a billion years of evolution Science 340 6133 2013 730 734
19. C. Rodrigues-Pousada, R.A. Menezes, and C. Pimentel The Yap family and its role in stress response Yeast 27 5 2010 245 258
20. P. Callac Prospections pour la recherche d'Agaricus bisporus en France: contexte historique et scientifique, premiers resultats Bull. Soc. Mycol. France 110 1994 145 165
21. J.S. Papadopoulos, and R. Agarwala COBALT: constraint-based alignment tool for multiple protein sequences Bioinformatics 23 9 2007 1073 1079 (Pubitemid 47050558)
22. C. Yan, L.H. Lee, and L.I. Davis Crm1p mediates regulated nuclear export of a yeast AP-1-life transcription factor EMBO J 17 24 1998 7416 7429 (Pubitemid 29002709)
23. S. Rozen, and H. Skaletsky Primer3 on the WWW for general users and for biologist programmers Methods Mol. Biol. 132 2000 365 386
24. J.D. Thompson, D.G. Higgins, and T.J. Gibson CLUSTAL-W - Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 22 1994 4673 4680 (Pubitemid 24354800)
25. S.F. Altschul, T.L. Madden, A.A. Schaffer, J.H. Zhang, Z. Zhang, W. Miller, and D.J. Lipman Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res. 25 17 1997 3389 3402 (Pubitemid 27359211)
26. T.A. Hall BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT 1999 Nucleic acids symposium series
27. O. Gascuel BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data Mol. Biol. Evol. 14 7 1997 685 695 (Pubitemid 27287289)
28. M. Gouy, S. Guindon, and O. Gascuel SeaView Version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building Mol. Biol. Evol. 27 2 2010 221 224
29. R.C. Edgar MUSCLE: multiple sequence alignment with high accuracy and high throughput Nucleic Acids Res. 32 5 2004 1792 1797 (Pubitemid 38832724)
30. E. Morin, A. Kohler, A.R. Baker, M. Foulongne-Oriol, V. Lombard, L.G. Nagy, R.A. Ohm, A. Patyshakuliyeva, A. Brun, A.L. Aerts, A.M. Bailey, C. Billette, P.M. Coutinho, G. Deakin, H. Doddapaneni, D. Floudas, J. Grimwood, K. Hilden, U. Kues, K.M. LaButti, A. Lapidus, E.A. Lindquist, S.M. Lucas, C. Murat, R.W. Riley, and A.A. Salamov Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche Proc. Nat Acad. Sci. USA 109 43 2012 17501 17506
31. C. Goudot, C. Etchebest, F. Devaux, and G. Lelandais The reconstruction of condition-specific transcriptional modules provides new insights in the evolution of yeast AP-1 proteins PLoS One 6 6 2011
32. M.J. Wood, G. Storz, and N. Tjandra Structural basis for redox regulation of Yap1 transcription factor localization Nature 430 7002 2004 917 921 (Pubitemid 39119222)
33. D. Azevedo, L. Nascimento, J. Labarre, M.B. Toledano, and C. Rodrigues-Pousada The S-cerevisiae Yap1 and Yap2 transcription factors share a common cadmium-sensing domain FEBS Lett. 581 2 2007 187 195 (Pubitemid 46096461)
34. T. Isoyama, A. Murayama, A. Nomoto, and S. Kuge Nuclear import of the yeast AP-1-like transcription factor Yap1p is mediated by transport receptor Pse1p, and this import step is not affected by oxidative stress J. Biol. Chem. 276 24 2001 21863 21869
35. S. Kosugi, M. Hasebe, N. Matsumura, H. Takashima, E. Miyamoto-Sato, M. Tomita, and H. Yanagawa Six classes of nuclear localization signals specific to different binding grooves of importin alpha J. Biol. Chem. 284 1 2009 478 485
36. M. Binder, D.S. Hibbett, K.H. Larsson, E. Larsson, E. Langer, and G. Langer The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes) Syst. Biodivers. 3 2 2005 113 157 (Pubitemid 40912473)
37. R. Garcia-Sandoval, Z. Wang, M. Binder, and D.S. Hibbett Molecular phylogenetics of the Gloeophyllales and relative ages of clades of Agaricomycotina producing a brown rot Mycologia 103 3 2011 510 524
38. K. Sugiyama, S. Izawa, and Y. Inoue The Yap1p-dependent induction of glutathione synthesis in heat shock response of Saccharomyces cerevisiae J. Biol. Chem. 275 20 2000 15535 15540 (Pubitemid 30337287)
39. A. Delaunay, A.D. Isnard, and M.B. Toledano H2O2 sensing through oxidation of the Yap1 transcription factor EMBO J. 19 19 2000 5157 5166
40. J. Slate, J. Gratten, D. Beraldi, J. Stapley, M. Hale, and J.M. Pemberton Gene mapping in the wild with SNPs: guidelines and future directions (vol. 136, p. 97, 2009) Genetica 138 4 2010 467
41. U. Vali, M. Brandstrom, M. Johansson, and H. Ellegren Insertion-deletion polymorphisms (indels) as genetic markers in natural populations BMC Genet. 2008 9
42. E.H. Coe Jr., M.G. Neuffer, and D.A. Hoisington The genetics of corn G.F. Sprague, J.W. Dudley, Corn and corn improvement third ed. 1988 American Society of Agronomy Madison, WI, USA, 81 258
43. G. Levinson, and G.A. Gutman Slipped-strand mispairing - A major mechanism for DNA sequence evolution Mol. Biol. Evol. 4 3 1987 203 221 (Pubitemid 17116759)
44. D.G. Wang, J.B. Fan, C.J. Siao, A. Berno, P. Young, R. Sapolsky, G. Ghandour, N. Perkins, E. Winchester, J. Spencer, L. Kruglyak, L. Stein, L. Hsie, T. Topaloglou, E. Hubbell, E. Robinson, M. Mittmann, M.S. Morris, N.P. Shen, D. Kilburn, J. Rioux, C. Nusbaum, S. Rozen, T.J. Hudson, R. Lipshutz, M. Chee, and E.S. Lander Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome Science 280 5366 1998 1077 1082 (Pubitemid 28234949)
45. A.J. Brookes The essence of SNPs Gene 234 2 1999 177 186 (Pubitemid 29298180)
46. A. Vignal, D. Milan, M. SanCristobal, and A. Eggen A review on SNP and other types of molecular markers and their use in animal genetics Genet. Sel. Evol. 34 3 2002 275 305 (Pubitemid 34774107)
47. R.T. Brumfield, P. Beerli, D.A. Nickerson, and S.V. Edwards The utility of single nucleotide polymorphisms in inferences of population history Trends Ecol. Evol. 18 5 2003 249 256 (Pubitemid 36551230)
48. P.A. Morin, G. Luikart, R.K. Wayne, and SNPW Grp SNPs in ecology, evolution and conservation Trends Ecol. Evol. 19 4 2004 208 216 (Pubitemid 38355800)
49. R.A. Fisher Statistical methods for research workers 12th ed 1954 Oliver and Boyd Edinburgh 856
50. R.W. Kerrigan, D.B. Carvalho, P.A. Horgen, and J.B. Anderson The indigenous coastal Californian population of the mushroom Agaricus bisporus, a cultivated species, may be at risk of extinction Mol. Ecol. 7 1 1998 35 45
51. J. Xu, R.W. Kerrigan, P. Callac, P.A. Horgen, and J.B. Anderson Genetic structure of natural populations of Agaricus bisporus, the commercial button mushroom J. Hered. 88 6 1997 482 488 (Pubitemid 28006552)
52. A.A. Komar SNPs, silent but not invisible Science 315 5811 2007 466 467 (Pubitemid 46178389)
53. M. Foulongne-Oriol, C. Spataro, V. Cathalot, S. Monllor, and J.M. Savoie An expanded genetic linkage map of an intervarietal Agaricus bisporus var. bisporus x A. bisporus var. burnettii hybrid based on AFLP, SSR and CAPS markers sheds light on the recombination behaviour of the species Fungal Genet. Biol. 47 3 2010 226 236
54. T.E. Ellenberger, C.J. Brandl, K. Struhl, and S.C. Harrison The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted alpha-helices - Crystal structure of the protein-DNA complex Cell 71 7 1992 1223 1237 (Pubitemid 23016556)
55. Y.J. Joo, J.H. Kim, U.B. Kang, M.H. Yu, and J. Kim Gcn4p-mediated transcriptional repression of ribosomal protein genes under amino-acid starvation EMBO J. 30 5 2011 859 872
56. C. Billette et al. Origin of laccase gene structural diversity in edible mushrooms. 7th International conference on mushroom biology and mushroom products (ICMBMP7) 2011 Arcachon France