-
1
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
M. Ashburner. Gene ontology: Tool for the unification of biology. Nature Genetics, 25:25-29, 2000.
-
(2000)
Nature Genetics
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
-
3
-
-
33847784863
-
Reading vertical text: Rotated vs. Marquee
-
Santa Monica, CA: Human Factors and Ergonomics Society
-
M. Byrne. Reading vertical text: Rotated vs. marquee. Proceedings of the Human Factors and Ergonomics Society 46th Annual Meeting, pages 1633-1635, 2002. Santa Monica, CA: Human Factors and Ergonomics Society.
-
(2002)
Proceedings of the Human Factors and Ergonomics Society 46th Annual Meeting
, pp. 1633-1635
-
-
Byrne, M.1
-
4
-
-
75549090505
-
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
-
R. Caspi, T. Altman, J. M. Dale, et al. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Research, 38(suppl 1):D473-D479, 2010.
-
(2010)
Nucleic Acids Research
, vol.38
, Issue.SUPPL. 1
-
-
Caspi, R.1
Altman, T.2
Dale, J.M.3
-
5
-
-
0032441150
-
Cluster analysis and display of genome-wide expression data
-
M. B. Eisen, P. T. Spellman, P. O. Brown, and D. Botstein. Cluster analysis and display of genome-wide expression data. Proc. Natl. Acad. Sci. USA, 95(25):14863-14868, 1998.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, Issue.25
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
7
-
-
84876515907
-
STRING v9.1: Protein-protein interaction networks, with increased coverage and integration
-
(Database issue)
-
A. Franceschini, D. Szklarczyk, S. Frankild, M. Kuhn, M. Simonovic, A. Roth, J. L. J, P. Minguez, P. Bork, C. von Mering, and L. J. Jensen. STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Research, 41(Database issue):D808-815, 2013.
-
(2013)
Nucleic Acids Research
, vol.41
-
-
Franceschini, A.1
Szklarczyk, D.2
Frankild, S.3
Kuhn, M.4
Simonovic, M.5
Roth, A.6
Minguez, J.L.J.P.7
Bork, P.8
Von Mering, C.9
Jensen, L.J.10
-
8
-
-
79960854989
-
Comparative analyses imply that the enigmatic Sigma factor 54 is a central controller of the bacterial exterior
-
C. Francke, T. G. Kormelink, Y. Hagemeijer, L. Overmars, V. Sluijter, R. Moezelaar, and R. J. Siezen. Comparative analyses imply that the enigmatic Sigma factor 54 is a central controller of the bacterial exterior. BMC Genomics, 12:385, 2011.
-
(2011)
BMC Genomics
, vol.12
, pp. 385
-
-
Francke, C.1
Kormelink, T.G.2
Hagemeijer, Y.3
Overmars, L.4
Sluijter, V.5
Moezelaar, R.6
Siezen, R.J.7
-
9
-
-
85028007389
-
Some simplified NP-complete problems
-
New York, NY, USA, ACM
-
M. R. Garey, D. S. Johnson, and L. Stockmeyer. Some simplified NP-complete problems. In Proceedings of the sixth annual ACM symposium on Theory of computing, STOC '74, pages 47-63, New York, NY, USA, 1974. ACM.
-
(1974)
Proceedings of the Sixth Annual ACM Symposium on Theory of Computing, STOC '74
, pp. 47-63
-
-
Garey, M.R.1
Johnson, D.S.2
Stockmeyer, L.3
-
10
-
-
0014854453
-
The diagram, a method for comparing sequences. Its use with amino acid and nucleotide sequences
-
A. J. Gibbs and G. A. McIntyre. The diagram, a method for comparing sequences. its use with amino acid and nucleotide sequences. Eur. J. Biochem, 16:111, 1970.
-
(1970)
Eur. J. Biochem
, vol.16
, pp. 111
-
-
Gibbs, A.J.1
McIntyre, G.A.2
-
12
-
-
84943817322
-
Error detecting and error correcting codes
-
April
-
R. W. Hamming. Error detecting and error correcting codes. The Bell System Technical Journal, 29(2):147-160, April 1950.
-
(1950)
The Bell System Technical Journal
, vol.29
, Issue.2
, pp. 147-160
-
-
Hamming, R.W.1
-
13
-
-
33845678910
-
Matrix explorer: A dual-representation system to explore social networks
-
N. Henry and J.-D. Fekete. Matrix Explorer: a dual-representation system to explore social networks. IEEE Trans. Visualization and Computer Graphics, 12(5):677-684, 2006.
-
(2006)
IEEE Trans. Visualization and Computer Graphics
, vol.12
, Issue.5
, pp. 677-684
-
-
Henry, N.1
Fekete, J.-D.2
-
14
-
-
51749088608
-
Biojava: An open-source framework for bioinformatics
-
R. C. G. Holland, T. A. Down, M. Pocock, A. Prli, D. Huen, K. James, S. Foisy, A. Drger, A. Yates, M. Heuer, and M. J. Schreiber. Biojava: an open-source framework for bioinformatics. Bioinformatics, 24(18):2096-2097, 2008.
-
(2008)
Bioinformatics
, vol.24
, Issue.18
, pp. 2096-2097
-
-
Holland, R.C.G.1
Down, T.A.2
Pocock, M.3
Prli, A.4
Huen, D.5
James, K.6
Foisy, S.7
Drger, A.8
Yates, A.9
Heuer, M.10
Schreiber, M.J.11
-
15
-
-
84861162574
-
Comparative genome analysis of central nitrogen metabolism and its control by GlnR in the class Bacilli
-
T. G. Kormelink, E. Koenders, Y. Hagemeijer, L. Overmars, R. J. Siezen, W. M. de Vos, and C. Francke. Comparative genome analysis of central nitrogen metabolism and its control by GlnR in the class Bacilli. BMC Genomics, 13:191, 2012.
-
(2012)
BMC Genomics
, vol.13
, pp. 191
-
-
Kormelink, T.G.1
Koenders, E.2
Hagemeijer, Y.3
Overmars, L.4
Siezen, R.J.5
De Vos, W.M.6
Francke, C.7
-
16
-
-
75549086416
-
The genomes on line database (GOLD) in 2009: Status of genomic and metagenomic projects and their associated metadata
-
Database issue
-
K. Liolios, I. M. Chen, K. Mavromatis, N. Tavernarakis, P. Hugenholtz, V. M. Markowitz, and N. C. Kyrpides. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Research, Database issue(38):D346-354, 2010.
-
(2010)
Nucleic Acids Research
, Issue.38
-
-
Liolios, K.1
Chen, I.M.2
Mavromatis, K.3
Tavernarakis, N.4
Hugenholtz, P.5
Markowitz, V.M.6
Kyrpides, N.C.7
-
18
-
-
0347126296
-
DBTBS: Database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics
-
Y. Makita, M. Nakao, N. Ogasawara, and K. Nakai. DBTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics. Nucleic Acids Research, 32:D75-77, 2004.
-
(2004)
Nucleic Acids Research
, vol.32
-
-
Makita, Y.1
Nakao, M.2
Ogasawara, N.3
Nakai, K.4
-
19
-
-
77953998482
-
Tree-Juxtaposer: Scalable tree comparison using Focus+Context with guaranteed visibility
-
T. Munzner, F. Guimbretìere, S. Tasiran, L. Zhang, and Y. Zhou. Tree-Juxtaposer: scalable tree comparison using Focus+Context with guaranteed visibility. ACM Trans. Graph., pages 453-462, 2003.
-
(2003)
ACM Trans. Graph.
, pp. 453-462
-
-
Munzner, T.1
Guimbretìere, F.2
Tasiran, S.3
Zhang, L.4
Zhou, Y.5
-
20
-
-
0032919364
-
KEGG: Kyoto encyclopedia of genes and genomes
-
H. Ogata, S. Goto, K. S. K, W. Fujibuchi, H. Bono, and M. Kanehisa. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res., 27(1):29-34, 2000.
-
(2000)
Nucleic Acids Res.
, vol.27
, Issue.1
, pp. 29-34
-
-
Ogata, H.1
Goto, S.2
Fujibuchi, W.K.S.K.3
Bono, H.4
Kanehisa, M.5
-
21
-
-
84875551750
-
MGcV: The microbial genomic context viewer for comparative genome analysis
-
L. Overmars, R. Kerkhoven, R. J. Siezen, and C. Francke. MGcV: the microbial genomic context viewer for comparative genome analysis. BMC Genomics, 14(1):209, 2013.
-
(2013)
BMC Genomics
, vol.14
, Issue.1
, pp. 209
-
-
Overmars, L.1
Kerkhoven, R.2
Siezen, R.J.3
Francke, C.4
-
22
-
-
84858077472
-
The pfam protein families database
-
Database issue
-
M. Punta, P. C. Coggill, R. Y. Eberhardt, J. Mistry, J. Tate, C. Boursnell, N. Pang, K. Forslund, G. Ceric, J. Clements, and et al. The Pfam protein families database. Nucleic Acids Res, 40(Database issue):D290-D301, 2012.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Punta, M.1
Coggill, P.C.2
Eberhardt, R.Y.3
Mistry, J.4
Tate, J.5
Boursnell, C.6
Pang, N.7
Forslund, K.8
Ceric, G.9
Clements, J.10
-
23
-
-
0028013807
-
The table lens: Merging graphical and symbolic representations in an interactive focus + context visualization for tabular information
-
R. Rao and S. K. Card. The table lens: merging graphical and symbolic representations in an interactive focus + context visualization for tabular information. In Proc. Conf. Human Factors in Computing Systems (CHI), pages 318-322, 1994.
-
(1994)
Proc. Conf. Human Factors in Computing Systems (CHI)
, pp. 318-322
-
-
Rao, R.1
Card, S.K.2
-
25
-
-
84876522835
-
BRENDA in 2013: Integrated reactions, kinetic data, enzyme function data, improved disease classification: New options and contents in BRENDA
-
I. Schomburg, A. Chang, S. Placzek, C. Söhngen, M. Rother, M. Lang, C. Munaretto, S. Ulas, M. Stelzer, A. Grote, M. Scheer, and D. Schomburg. BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA. Nucleic Acids Research, 41:764-772, 2013.
-
(2013)
Nucleic Acids Research
, vol.41
, pp. 764-772
-
-
Schomburg, I.1
Chang, A.2
Placzek, S.3
Söhngen, C.4
Rother, M.5
Lang, M.6
Munaretto, C.7
Ulas, S.8
Stelzer, M.9
Grote, A.10
Scheer, M.11
Schomburg, D.12
-
27
-
-
77956988767
-
A phylum level perspective on bacterial cell envelope architecture
-
I. C. Sutcliffe. A phylum level perspective on bacterial cell envelope architecture. Trends in Microbiology, 18(10):464-470, 2010.
-
(2010)
Trends in Microbiology
, vol.18
, Issue.10
, pp. 464-470
-
-
Sutcliffe, I.C.1
-
28
-
-
0042902833
-
The COG database: An updated version includes eukaryotes
-
R. Tatusov, N. Fedorova, J. Jackson, et al. The COG database: an updated version includes eukaryotes. BMC Bioinformatics, 4(1):41, 2003.
-
(2003)
BMC Bioinformatics
, vol.4
, Issue.1
, pp. 41
-
-
Tatusov, R.1
Fedorova, N.2
Jackson, J.3
-
29
-
-
79960422847
-
Genome sequence and analysis of the tuber crop potato
-
The Potato Genome Sequencing Consortium
-
The Potato Genome Sequencing Consortium. Genome sequence and analysis of the tuber crop potato. Nature, 475:189-197, 2011.
-
(2011)
Nature
, vol.475
, pp. 189-197
-
-
-
30
-
-
84874724662
-
Update on activities at the universal protein resource (UniProt) in 2013
-
UniProt Consortium. Database issue
-
UniProt Consortium. Update on activities at the Universal Protein Resource (UniProt) in 2013. Nucleic Acids Research, 41(Database issue):D43-47, 2013.
-
(2013)
Nucleic Acids Research
, vol.41
-
-
-
32
-
-
84892639513
-
-
Wordle-Beautiful Word Clouds
-
Wordle-Beautiful Word Clouds. http://www.wordle.net.
-
-
-
-
33
-
-
70549087467
-
GAP: A graphical environment for matrix visualization and cluster analysis
-
H. M. Wu, Y. J. Tien, and C. H. Chen. GAP: a graphical environment for matrix visualization and cluster analysis. Computational Statistics and Data Analysis, 54:767-778, 2010.
-
(2010)
Computational Statistics and Data Analysis
, vol.54
, pp. 767-778
-
-
Wu, H.M.1
Tien, Y.J.2
Chen, C.H.3
-
34
-
-
72449179581
-
Matrix visualization
-
In C. H. Chen, W. Hardle, and A. Unwin, editors, Springer-Verlag, Heidelberg
-
H. M. Wu, S. Tzeng, and C. H. Chen. Matrix visualization. In C. H. Chen, W. Hardle, and A. Unwin, editors, Handbook of Computational Statistics (Volume III): Data Visualization. Springer-Verlag, Heidelberg, 2008.
-
(2008)
Handbook of Computational Statistics (Volume III): Data Visualization
-
-
Wu, H.M.1
Tzeng, S.2
Chen, C.H.3
|