Genome sequence of Weissella ceti NC36, an emerging pathogen of farmed rainbow trout in the United States

Genome Announcements

Volumn 1, Issue 1, 2013, Pages

  Ladner, Jason T ^a   Welch, Timothy J ^b   Whitehouse, Chris A ^a   Palacios, Gustavo F ^a  

^a UNITED STATES ARMY MEDICAL RESEARCH INSTITUTE OF INFECTIOUS DISEASES   (United States)

^b NATIONAL CENTER FOR COOL AND COLD WATER AQUACULTURE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84892627475     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00187-12     Document Type: Article

References (12)

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2. Björkroth KJ, Schillinger U, Geisen R, Weiss N, Hoste B, Holzapfel WH, Korkeala HJ, Vandamme P. 2002. Taxonomic study of Weissella confusa and description of Weissella cibaria sp. nov., detected in food and clinical samples. Int. J. Syst. Evol. Microbiol. 52:141-148.
3. Olano A, Chua J, Schroeder S, Minari A, La Salvia M, Hall G. 2001. Weissella confusa (basonym: Lactobacillus confusus) bacteremia: a case report. J. Clin. Microbiol. 39:1604-1607.
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7. Liu JY, Li AH, Ji C, Yang WM. 2009. First description of a novel Weissella species as an opportunistic pathogen for rainbow trout Oncorhynchus mykiss (Walbaum) in China. Vet. Microbiol. 136:314-320.
8. Figueiredo HC, Costa FA, Leal CA, Carvalho-Castro GA, Leite RC. 2012. Weissella sp. outbreaks in commercial rainbow trout (Oncorhynchus mykiss) farms in Brazil. Vet. Microbiol. 156:359-366.
9. Vela AI, Fernandez A, de Quiros YB, Herraez P, Dominguez L, Fernandez-Garayzabal JF. 2011. Weissella ceti sp. nov., isolated from beaked whales (Mesoplodon bidens). Int. J. Syst. Evol. Microbiol. 61: 2758-2762.
10. Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJ, Birol I. 2009. ABySS: a parallel assembler for short read sequence data. Genome Res. 19:1117-1123.
11. Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with bowtie 2. Nat. Methods 9:357-359.
12. Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, 1000 Genome Project Data Processing Subgroup. 2009. The sequence alignment/map format and SAMtools. Bioinformatics 25:32078-2079.