-
1
-
-
79952633685
-
Pattern growth, and control
-
Lander, A. D. Pattern, growth, and control. Cell 144, 955-969 (2011)
-
(2011)
Cell
, vol.144
, pp. 955-969
-
-
Lander, A.D.1
-
2
-
-
0034532235
-
PIN-FORMED 1 regulates cell fate at the periphery of the shoot apical meristem
-
Vernoux, T., Kronenberger, J., Grandjean, O., Laufs, P. & Traas, J. PIN-FORMED 1 regulates cell fate at the periphery of the shoot apical meristem. Development 127, 5157-5165 (2000)
-
(2000)
Development
, vol.127
, pp. 5157-5165
-
-
Vernoux, T.1
Kronenberger, J.2
Grandjean, O.3
Laufs, P.4
Traas, J.5
-
3
-
-
0034020523
-
Auxin regulates the initiation and radial position of plant lateral organs
-
Reinhardt, D., Mandel, T. & Kuhlemeier, C. Auxin regulates the initiation and radial position of plant lateral organs. Plant Cell 12, 507-518 (2000)
-
(2000)
Plant Cell
, vol.12
, pp. 507-518
-
-
Reinhardt, D.1
Mandel, T.2
Kuhlemeier, C.3
-
4
-
-
0344875033
-
Regulation of phyllotaxis by polar auxin transport
-
Reinhardt, D. et al. Regulation of phyllotaxis by polar auxin transport. Nature 426, 255-260 (2003)
-
(2003)
Nature
, vol.426
, pp. 255-260
-
-
Reinhardt, D.1
-
5
-
-
27644549049
-
Patterns of auxin transport and gene expression during primordium development revealed by live imaging of the Arabidopsis inflorescence meristem
-
Heisler, M. G. et al. Patterns of auxin transport and gene expression during primordium development revealed by live imaging of the Arabidopsis inflorescence meristem. Curr. Biol. 15, 1899-1911 (2005)
-
(2005)
Curr. Biol
, vol.15
, pp. 1899-1911
-
-
Heisler, M.G.1
-
6
-
-
0017327492
-
Phyllotaxis and the Fibonacci series
-
Mitchison, G. J. Phyllotaxis and the Fibonacci series. Science196, 270-275 (1977)
-
(1977)
Science
, vol.96
, pp. 270-275
-
-
Mitchison, G.J.1
-
7
-
-
0007404696
-
Diffusion mechanism for phyllotaxis: Theoretical physico-chemical and computer study
-
Veen, A. H. & Lindenmayer, A. Diffusion mechanism for phyllotaxis: theoretical physico-chemical and computer study. Plant Physiol. 60, 127-139 (1977)
-
(1977)
Plant Physiol
, vol.60
, pp. 127-139
-
-
Veen, A.H.1
Lindenmayer, A.2
-
8
-
-
0029892224
-
Phyllotaxis as a dynamical self organizing process. Part II: The spontaneous formation of a periodicity and the coexistence of spiral and whorled patterns
-
Douady, S. & Couder, Y. Phyllotaxis as a dynamical self organizing process. Part II: the spontaneous formation of a periodicity and the coexistence of spiral and whorled patterns. J. Theor. Biol. 178, 275-294 (1996)
-
(1996)
J. Theor. Biol
, vol.178
, pp. 275-294
-
-
Douady, S.1
Couder, Y.2
-
9
-
-
31944445648
-
Computer simulations reveal properties of the cell-cell signaling network at the shoot apex in Arabidopsis
-
de Reuille, P. B. et al. Computer simulations reveal properties of the cell-cell signaling network at the shoot apex in Arabidopsis. Proc. Natl Acad. Sci. USA 103, 1627-1632 (2006)
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 1627-1632
-
-
De Reuille, P.B.1
-
10
-
-
31944449689
-
An auxindriven polarized transport model for phyllotaxis
-
Jönsson, H.,Heisler, M. G., Shapiro, B. E.,Meyerowitz, E. M.&Mjolsness, E.An auxindriven polarized transport model for phyllotaxis. Proc. Natl Acad. Sci. USA 103, 1633-1638 (2006)
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 1633-1638
-
-
Jönsson, H.1
Heisler, M.G.2
Shapiro, B.E.3
Meyerowitz, E.M.4
Mjolsness5
-
11
-
-
31944436778
-
A plausible model of phyllotaxis
-
Smith, R. S. et al. A plausible model of phyllotaxis. Proc. Natl Acad. Sci. USA 103, 1301-1306 (2006)
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 1301-1306
-
-
Smith, R.S.1
-
12
-
-
55449100546
-
Flux-based transport enhancement as a plausible unifying mechanism for auxin transport in meristem development
-
Stoma, S. et al. Flux-based transport enhancement as a plausible unifying mechanism for auxin transport in meristem development. PLOS Comput. Biol. 4, e1000207 (2008)
-
(2008)
PLOS Comput. Biol
, vol.4
-
-
Stoma, S.1
-
13
-
-
79960090553
-
The auxin signalling network translates dynamic input into robust patterning at the shoot apex
-
Vernoux, T. et al. The auxin signalling network translates dynamic input into robust patterning at the shoot apex. Mol. Syst. Biol. 7, 508 (2011)
-
(2011)
Mol. Syst. Biol
, vol.7
, pp. 508
-
-
Vernoux, T.1
-
14
-
-
30344432686
-
Cytokinin signaling and its inhibitor AHP6 regulate cell fate during vascular development
-
Mähönen, A. P. Cytokinin signaling and its inhibitor AHP6 regulate cell fate during vascular development. Science 311, 94-98 (2006)
-
(2006)
Science
, vol.311
, pp. 94-98
-
-
Mähönen, A.P.1
-
15
-
-
4344652202
-
Control of phyllotaxy by the cytokinin-inducible response regulator homologue ABPHYL1
-
Giulini, A., Wang, J. & Jackson, D. Control of phyllotaxy by the cytokinin-inducible response regulator homologue ABPHYL1. Nature 430, 1031-1034 (2004)
-
(2004)
Nature
, vol.430
, pp. 1031-1034
-
-
Giulini, A.1
Wang, J.2
Jackson, D.3
-
16
-
-
29244489097
-
WUSCHEL controls meristem function by direct regulation of cytokinin-inducible response regulators
-
Leibfried, A. et al. WUSCHEL controls meristem function by direct regulation of cytokinin-inducible response regulators. Nature 438, 1172-1175 (2005)
-
(2005)
Nature
, vol.438
, pp. 1172-1175
-
-
Leibfried, A.1
-
17
-
-
63849261018
-
Gene expression map of the Arabidopsis shoot apical meristem stem cell niche
-
Yadav, R. K., Girke, T., Pasala, S., Xie, M. & Reddy, G. V. Gene expression map of the Arabidopsis shoot apical meristem stem cell niche. Proc. Natl Acad. Sci. USA 106, 4941-4946 (2009)
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 4941-4946
-
-
Yadav, R.K.1
Girke, T.2
Pasala, S.3
Xie, M.4
Reddy, G.V.5
-
18
-
-
79952304237
-
Cytokinin regulates the activity of reproductive meristems flower organ size ovule formation and thus seed yield in Arabidopsis thaliana
-
Bartrina, I., Otto, E., Strnad, M., Werner, T. & Schmülling, T. Cytokinin regulates the activity of reproductive meristems, flower organ size, ovule formation, and thus seed yield in Arabidopsis thaliana. Plant Cell 23, 69-80 (2011)
-
(2011)
Plant Cell
, vol.23
, pp. 69-80
-
-
Bartrina, I.1
Otto, E.2
Strnad, M.3
Werner, T.4
Schmülling, T.5
-
19
-
-
0346836011
-
Initial transitions, order and disorder in phyllotactic patterns: The ontogeny of Helanthus annuus
-
Couder, Y. Initial transitions, order and disorder in phyllotactic patterns: the ontogeny of Helanthus annuus. A case study. Acta Societates Botanicarum Poloniae 67, 129-150 (1998)
-
(1998)
A Case Study. Acta Societates Botanicarum Poloniae
, vol.67
, pp. 129-150
-
-
Couder, Y.1
-
20
-
-
0345167799
-
Local, efflux-dependent auxin gradients as a commonmodule for plant organ formation
-
Benková, E. et al. Local, efflux-dependent auxin gradients as a commonmodule for plant organ formation. Cell 115, 591-602 (2003)
-
(2003)
Cell
, vol.115
, pp. 591-602
-
-
Benková, E.1
-
21
-
-
0032144978
-
Cellular parameters of the shoot apical meristem in Arabidopsis
-
Laufs, P., Grandjean, O., Jonak, C., Kieu, K. & Traas, J. Cellular parameters of the shoot apical meristem in Arabidopsis. Plant Cell 10, 1375-1390 (1998)
-
(1998)
Plant Cell
, vol.10
, pp. 1375-1390
-
-
Laufs, P.1
Grandjean, O.2
Jonak, C.3
Kieu, K.4
Traas, J.5
-
22
-
-
79958035802
-
A mutually inhibitory interaction between auxin and cytokinin specifies vascular pattern in roots
-
Bishopp, A. et al. A mutually inhibitory interaction between auxin and cytokinin specifies vascular pattern in roots. Curr. Biol. 21, 917-926 (2011)
-
(2011)
Curr. Biol
, vol.21
, pp. 917-926
-
-
Bishopp, A.1
-
23
-
-
0032473570
-
The Arabidopsis gene MONOPTEROS encodes a transcription factor mediating embryo axis formation and vascular development
-
Hardtke, C. S. & Berleth, T. The Arabidopsis gene MONOPTEROS encodes a transcription factor mediating embryo axis formation and vascular development. EMBO J. 17, 1405-1411 (1998)
-
(1998)
EMBO J
, vol.17
, pp. 1405-1411
-
-
Hardtke, C.S.1
Berleth, T.2
-
24
-
-
1542647264
-
Type-A Arabidopsis response regulators are partially redundant negative regulators of cytokinin signaling
-
To, J. P. C. et al. Type-A Arabidopsis response regulators are partially redundant negative regulators of cytokinin signaling. Plant Cell 16, 658-671 (2004)
-
(2004)
Plant Cell
, vol.16
, pp. 658-671
-
-
To, J.P.C.1
-
25
-
-
45749109424
-
Müller, B.&Sheen, J.Cytokininandauxin interaction in root stem-cell specification during early embryogenesis
-
Müller, B.&Sheen, J.Cytokininandauxin interaction in root stem-cell specification during early embryogenesis. Nature 453, 1094-1097 (2008)
-
(2008)
Nature
, vol.453
, pp. 1094-1097
-
-
-
26
-
-
57149091945
-
A genetic framework for the control of cell division and differentiation in the root meristem
-
Dello Ioio, R. et al. A genetic framework for the control of cell division and differentiation in the root meristem. Science 322, 1380-1384 (2008)
-
(2008)
Science
, vol.322
, pp. 1380-1384
-
-
Dello Ioio, R.1
-
27
-
-
80054746753
-
Cytokinin modulates endocytic trafficking of PIN1 auxin efflux carrier to control plant organogenesis
-
Marhavy, P. et al. Cytokinin modulates endocytic trafficking of PIN1 auxin efflux carrier to control plant organogenesis. Dev. Cell 21, 796-804 (2011)
-
(2011)
Dev. Cell
, vol.21
, pp. 796-804
-
-
Marhavy, P.1
-
28
-
-
77953942174
-
Hormonal control of the shoot stem-cell niche
-
Zhao, Z. et al. Hormonal control of the shoot stem-cell niche. Nature 465, 1089-1092 (2010)
-
(2010)
Nature
, vol.465
, pp. 1089-1092
-
-
Zhao, Z.1
-
29
-
-
84861158459
-
Noise and robustness in phyllotaxis
-
Mirabet, V., Besnard, F., Vernoux, T. & Boudaoud, A. Noise and robustness in phyllotaxis. PLoS Comput. Biol. 8, e1002389 (2012)
-
(2012)
PLoS Comput. Biol
, vol.8
-
-
Mirabet, V.1
Besnard, F.2
Vernoux, T.3
Boudaoud, A.4
-
30
-
-
77954705109
-
Imaging plant growth in 4D: Robust tissue reconstruction and lineaging at cell resolution
-
Fernandez, R. et al. Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution. Nature Methods 7, 547-553 (2010)
-
(2010)
Nature Methods
, vol.7
, pp. 547-553
-
-
Fernandez, R.1
-
31
-
-
9144238749
-
The ethanol switch: A tool for tissue-specific gene induction during plant development
-
Deveaux, Y. et al. The ethanol switch: a tool for tissue-specific gene induction during plant development. Plant J. 36, 918-930 (2003)
-
(2003)
Plant J
, vol.36
, pp. 918-930
-
-
Deveaux, Y.1
-
32
-
-
24044485242
-
Arabidopsis KNOXI proteins activate cytokinin biosynthesis
-
Yanai, O. et al. Arabidopsis KNOXI proteins activate cytokinin biosynthesis. Curr. Biol. 15, 1566-1571 (2005)
-
(2005)
Curr. Biol
, vol.15
, pp. 1566-1571
-
-
Yanai, O.1
-
33
-
-
77950867049
-
MONOPTEROS controls embryonic root initiation by regulating a mobile transcription factor
-
Schlereth, A. et al. MONOPTEROS controls embryonic root initiation by regulating a mobile transcription factor. Nature 464, 913-916 (2010)
-
(2010)
Nature
, vol.464
, pp. 913-916
-
-
Schlereth, A.1
-
34
-
-
0032447801
-
Floral dip: A simplified method for Agrobacteriummediated transformation of Arabidopsis thaliana
-
Clough, S. J. & Bent, A. F. Floral dip: a simplified method for Agrobacteriummediated transformation of Arabidopsis thaliana. Plant J. 16, 735-743 (1998)
-
(1998)
Plant J
, vol.16
, pp. 735-743
-
-
Clough, S.J.1
Bent, A.F.2
-
35
-
-
33645822943
-
Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots
-
Lee, J.-Y. et al. Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots. Proc. Natl Acad. Sci. USA 103, 6055-6060 (2006)
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 6055-6060
-
-
Lee, J.-Y.1
-
36
-
-
0342803566
-
PGreen: A versatile and flexible binary Ti vector for Agrobacterium-mediated plant transformation
-
Hellens, R. P., Edwards, E. A., Leyland, N. R., Bean, S. & Mullineaux, P. M. pGreen: a versatile and flexible binary Ti vector for Agrobacterium-mediated plant transformation. Plant Mol. Biol. 42, 819-832 (2000)
-
(2000)
Plant Mol. Biol
, vol.42
, pp. 819-832
-
-
Hellens, R.P.1
Edwards, E.A.2
Leyland, N.R.3
Bean, S.4
Mullineaux, P.5
-
37
-
-
14744269100
-
Modular cloning in plant cells
-
Karimi, M., DeMeyer, B.& Hilson, P.Modular cloning in plant cells. Trends Plant Sci. 10, 103-105 (2005)
-
(2005)
Trends Plant Sci
, vol.10
, pp. 103-105
-
-
Karimi, M.1
DeMeyer, B.2
Hilson, P.3
-
38
-
-
57749111976
-
Eleven golden rules of quantitative RT-PCR
-
Udvardi, M. K., Czechowski, T. & Scheible, W.-R. Eleven golden rules of quantitative RT-PCR. Plant Cell 20, 1736-1737 (2008)
-
(2008)
Plant Cell
, vol.20
, pp. 1736-1737
-
-
Udvardi, M.K.1
Czechowski, T.2
Scheible, W.-R.3
-
39
-
-
66149170070
-
Real-time quantitative RT-PCR: Design, calculations, and statistics
-
Rieu, I. & Powers, S. J. Real-time quantitative RT-PCR: design, calculations, and statistics. Plant Cell 21, 1031-1033 (2009)
-
(2009)
Plant Cell
, vol.21
, pp. 1031-1033
-
-
Rieu, I.1
Powers, S.J.2
-
40
-
-
1842483281
-
Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-Excel-based tool using pair-wise correlations
-
Pfaffl, M. W., Tichopad, A., Prgomet, C. & Neuvians, T. P. Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-Excel-based tool using pair-wise correlations. Biotechnol. Lett. 26, 509-515 (2004)
-
(2004)
Biotechnol. Lett
, vol.26
, pp. 509-515
-
-
Pfaffl, M.W.1
Tichopad, A.2
Prgomet, C.3
Neuvians, T.P.4
-
41
-
-
10844290766
-
A model-based background adjustment for oligonucleotide expression arrays
-
Wu, Z., Irizarry, R. A., Gentleman, R., Martinez-Murillo, F. & Spencer, F. A model-based background adjustment for oligonucleotide expression arrays. J. Am. Stat. Assoc. 99, 909-917 (2004)
-
(2004)
J. Am. Stat. Assoc
, vol.99
, pp. 909-917
-
-
Wu, Z.1
Irizarry, R.A.2
Gentleman, R.3
Martinez-Murillo, F.4
Spencer, F.5
-
42
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Smyth, G. K. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol. 3, http://dx.doi.org/10.2202/1544-6115.1027 (2004)
-
(2004)
Stat. Appl. Genet. Mol. Biol
, vol.3
-
-
Smyth, G.K.1
-
43
-
-
0042424602
-
Statistical significance for genomewide studies
-
Storey, J. D. & Tibshirani, R. Statistical significance for genomewide studies. Proc. Natl Acad. Sci. USA 100, 9440-9445 (2003)
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
44
-
-
29244442950
-
Simplified screening for the detection of soluble fusion constructs expressed in E. Coli using a modular set of vectors
-
Dümmler, A., Lawrence, A.-M.&deMarco, A. Simplified screening for the detection of soluble fusion constructs expressed in E. coli using a modular set of vectors. Microb. Cell Fact. 4, 34 (2005)
-
(2005)
Microb. Cell Fact
, vol.4
, pp. 34
-
-
Dümmler, A.1
-
45
-
-
34248636482
-
Situ hybridization technique formRNAdetection inwholemount Arabidopsis samples
-
Hejátko, J. et al. In situ hybridization technique formRNAdetection inwholemount Arabidopsis samples. Nature Protocols 1, 1939-1946 (2006)
-
(2006)
Nature Protocols
, vol.1
, pp. 1939-1946
-
-
Hejátko, J.1
-
46
-
-
0842334769
-
In vivo analysis of cell division, cell growth, and differentiation at the shoot apical meristem in Arabidopsis
-
Grandjean, O. et al. In vivo analysis of cell division, cell growth, and differentiation at the shoot apical meristem in Arabidopsis. Plant Cell 16, 74-87 (2004)
-
(2004)
Plant Cell
, vol.16
, pp. 74-87
-
-
Grandjean, O.1
-
47
-
-
0141927320
-
Finding the center of a phyllotactic pattern
-
Hotton, S. Finding the center of a phyllotactic pattern. J. Theor. Biol. 225, 15-32 (2003)
-
(2003)
J. Theor. Biol
, vol.225
, pp. 15-32
-
-
Hotton, S.1
-
48
-
-
33644876456
-
A protocol to analyse cellular dynamics during plant development
-
Barbier de Reuille, P. B., Bohn-Courseau, I., Godin, C. & Traas, J. A protocol to analyse cellular dynamics during plant development. Plant J. 44, 1045-1053 (2005)
-
(2005)
Plant J
, vol.44
, pp. 1045-1053
-
-
Barbier De Reuille, P.B.1
Bohn-Courseau, I.2
Godin, C.3
Traas, J.4
-
49
-
-
79955143469
-
STSE Spatio-temporal simulation environment dedicated to biology
-
Stoma, S., Fröhlich, M., Gerber, S. & Klipp, E. STSE: Spatio-temporal simulation environment dedicated to biology. BMC Bioinformatics 12, 126 (2011)
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 126
-
-
Stoma, S.1
Fröhlich, M.2
Gerber, S.3
Klipp, E.4
-
50
-
-
59849114619
-
PlantGL a Python-based geometric library for 3D plant modelling at different scales
-
Pradal, C., Boudon, F., Nouguier, C., Chopard, J. & Godin, C. PlantGL: a Python-based geometric library for 3D plant modelling at different scales. Graph. Models 71, 1-21 (2009)
-
(2009)
Graph. Models
, vol.71
, pp. 1-21
-
-
Pradal, C.1
Boudon, F.2
Nouguier, C.3
Chopard, J.4
Godin, C.5
-
51
-
-
34247398398
-
Plants expressing a miR164-resistant CUC2gene reveal the importance of post-meristematicmaintenance of phyllotaxy in Arabidopsis
-
Peaucelle, A., Morin, H., Traas, J. & Laufs, P. Plants expressing a miR164-resistant CUC2gene reveal the importance of post-meristematicmaintenance of phyllotaxy in Arabidopsis. Development 134, 1045-1050 (2007)
-
(2007)
Development
, vol.134
, pp. 1045-1050
-
-
Peaucelle, A.1
Morin, H.2
Traas, J.3
Laufs, P.4
-
53
-
-
84886094982
-
Pattern identification and characterization reveal permutations of organs as a key genetically controlled property of post-meristematic phyllotaxis
-
Guédon, Y. et al. Pattern identification and characterization reveal permutations of organs as a key genetically controlled property of post-meristematic phyllotaxis. J. Theor. Biol., (2013)
-
(2013)
J. Theor. Biol.
-
-
Guédon, Y.1
-
55
-
-
33744799923
-
Rfsti Context tree estimation for not necessarily finite memory processes, via BIC and MDL
-
Csiszár, I. & Talata, Z. Context tree estimation for not necessarily finite memory processes, via BIC and MDL. IEEE Trans. Inf. Theory 52, 1007-1016 (2006).
-
(2006)
IEEE Trans. Inf. Theory
, vol.52
, pp. 1007-1016
-
-
Csiszár, I.1
Talata, Z.2
|