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Volumn 5, Issue 1, 2014, Pages 23-28

Is NMR fragment screening fine-tuned to assess druggability of protein-protein interactions?

Author keywords

binding affinity; druggability; NMR fragment screening; protein protein interactions

Indexed keywords

HYPOXIA INDUCIBLE FACTOR 1ALPHA; VON HIPPEL LINDAU PROTEIN;

EID: 84892581838     PISSN: None     EISSN: 19485875     Source Type: Journal    
DOI: 10.1021/ml400296c     Document Type: Article
Times cited : (48)

References (26)
  • 1
    • 37249004920 scopus 로고    scopus 로고
    • Reaching for High-Hanging Fruit in Drug Discovery at Protein-Protein Interfaces
    • Wells, J. A.; McClendon, C. L. Reaching for High-Hanging Fruit in Drug Discovery at Protein-Protein Interfaces Nature 2007, 450, 1001-1009
    • (2007) Nature , vol.450 , pp. 1001-1009
    • Wells, J.A.1    McClendon, C.L.2
  • 2
  • 3
    • 84874517756 scopus 로고    scopus 로고
    • Features of Protein-Protein Interactions That Translate into Potent Inhibitors: Topology, Surface Area and Affinity
    • Smith, M. C.; Gestwicki, J. E. Features of Protein-Protein Interactions That Translate Into Potent Inhibitors: Topology, Surface Area and Affinity Expert Rev. Mol. Med. 2012, 14, e16
    • (2012) Expert Rev. Mol. Med. , vol.14 , pp. 16
    • Smith, M.C.1    Gestwicki, J.E.2
  • 4
    • 44949142848 scopus 로고    scopus 로고
    • Evolution and Dynamics of Protein Interactions and Networks
    • Levy, E. D.; Pereira-Leal, J. B. Evolution and Dynamics of Protein Interactions and Networks Curr. Opin. Struct. Biol. 2008, 18, 349-357
    • (2008) Curr. Opin. Struct. Biol. , vol.18 , pp. 349-357
    • Levy, E.D.1    Pereira-Leal, J.B.2
  • 5
    • 84857712365 scopus 로고    scopus 로고
    • Protein-Protein Interaction Inhibitors Get into the Groove
    • Mullard, A. Protein-Protein Interaction Inhibitors Get into the Groove Nat. Rev. Drug Discovery 2012, 11, 173-175
    • (2012) Nat. Rev. Drug Discovery , vol.11 , pp. 173-175
    • Mullard, A.1
  • 6
    • 84857509304 scopus 로고    scopus 로고
    • Small-Molecule Stabilization of Protein-Protein Interactions: An Underestimated Concept in Drug Discovery?
    • Thiel, P.; Kaiser, M.; Ottmann, C. Small-Molecule Stabilization of Protein-Protein Interactions: an Underestimated Concept in Drug Discovery? Angew. Chem., Int. Ed. 2012, 51, 2012-2018
    • (2012) Angew. Chem., Int. Ed. , vol.51 , pp. 2012-2018
    • Thiel, P.1    Kaiser, M.2    Ottmann, C.3
  • 7
    • 33845594315 scopus 로고    scopus 로고
    • Protein-Protein Interactions as Targets for Small Molecule Drug Discovery
    • Fry, D. C. Protein-Protein Interactions as Targets for Small Molecule Drug Discovery Biopolymers 2006, 84, 535-552
    • (2006) Biopolymers , vol.84 , pp. 535-552
    • Fry, D.C.1
  • 8
    • 84879755649 scopus 로고    scopus 로고
    • Launching Spiking Ligands into a Protein-Protein Interface: A Promising Strategy to Destabilize and Break Interface Formation in a tRNA Modifying Enzyme
    • Immekus, F.; Barandun, L. J.; Betz, M.; Debaene, F.; Petiot, S.; Sanglier-Cianferani, S.; Reuter, K.; Diederich, F.; Klebe, G. Launching Spiking Ligands Into a Protein-Protein Interface: a Promising Strategy to Destabilize and Break Interface Formation in a tRNA Modifying Enzyme ACS Chem. Biol. 2013, 8, 1163-1178
    • (2013) ACS Chem. Biol. , vol.8 , pp. 1163-1178
    • Immekus, F.1    Barandun, L.J.2    Betz, M.3    Debaene, F.4    Petiot, S.5    Sanglier-Cianferani, S.6    Reuter, K.7    Diederich, F.8    Klebe, G.9
  • 9
    • 58849145512 scopus 로고    scopus 로고
    • Predicting Druggable Binding Sites at the Protein-Protein Interface
    • Fuller, J. C.; Burgoyne, N. J.; Jackson, R. M. Predicting Druggable Binding Sites at the Protein-Protein Interface Drug Discovery Today 2009, 14, 155-161
    • (2009) Drug Discovery Today , vol.14 , pp. 155-161
    • Fuller, J.C.1    Burgoyne, N.J.2    Jackson, R.M.3
  • 10
    • 70349756972 scopus 로고    scopus 로고
    • Atomic Interactions and Profile of Small Molecules Disrupting Protein-Protein Interfaces: The TIMBAL Database
    • Higueruelo, A. P.; Schreyer, A.; Bickerton, G. R. J.; Pitt, W. R.; Groom, C. R.; Blundell, T. L. Atomic Interactions and Profile of Small Molecules Disrupting Protein-Protein Interfaces: the TIMBAL Database Chem. Biol. Drug Des. 2009, 74, 457-467
    • (2009) Chem. Biol. Drug Des. , vol.74 , pp. 457-467
    • Higueruelo, A.P.1    Schreyer, A.2    Bickerton, G.R.J.3    Pitt, W.R.4    Groom, C.R.5    Blundell, T.L.6
  • 11
    • 79953703975 scopus 로고    scopus 로고
    • Fragment Screening to Predict Druggability (Ligandability) and Lead Discovery Success
    • Edfeldt, F. N. B.; Folmer, R. H. A.; Breeze, A. L. Fragment Screening to Predict Druggability (Ligandability) and Lead Discovery Success Drug Discovery Today 2011, 16, 284-287
    • (2011) Drug Discovery Today , vol.16 , pp. 284-287
    • Edfeldt, F.N.B.1    Folmer, R.H.A.2    Breeze, A.L.3
  • 12
    • 84856389159 scopus 로고    scopus 로고
    • Structural Biology and Drug Discovery of Difficult Targets: The Limits of Ligandability
    • Surade, S.; Blundell, T. L. Structural Biology and Drug Discovery of Difficult Targets: the Limits of Ligandability Chem. Biol. 2012, 19, 42-50
    • (2012) Chem. Biol. , vol.19 , pp. 42-50
    • Surade, S.1    Blundell, T.L.2
  • 13
    • 77954260902 scopus 로고    scopus 로고
    • Fpocket: Online Tools for Protein Ensemble Pocket Detection and Tracking
    • Schmidtke, P.; Le Guilloux, V.; Maupetit, J.; Tufféry, P. Fpocket: Online Tools for Protein Ensemble Pocket Detection and Tracking Nucleic Acids Res. 2010, 38, W582-9
    • (2010) Nucleic Acids Res. , vol.38 , pp. 582-589
    • Schmidtke, P.1    Le Guilloux, V.2    Maupetit, J.3    Tufféry, P.4
  • 14
    • 77954304081 scopus 로고    scopus 로고
    • DrugScorePPI Webserver: Fast and Accurate in Silico Alanine Scanning for Scoring Protein-Protein Interactions
    • Krüger, D. M.; Gohlke, H. DrugScorePPI Webserver: Fast and Accurate in Silico Alanine Scanning for Scoring Protein-Protein Interactions Nucleic Acids Res. 2010, 38, W480-6
    • (2010) Nucleic Acids Res. , vol.38 , pp. 480-486
    • Krüger, D.M.1    Gohlke, H.2
  • 15
    • 33745597909 scopus 로고    scopus 로고
    • Predicting Protein Interaction Sites: Binding Hot-Spots in Protein-Protein and Protein-Ligand Interfaces
    • Burgoyne, N. J.; Jackson, R. M. Predicting Protein Interaction Sites: Binding Hot-Spots in Protein-Protein and Protein-Ligand Interfaces Bioinformatics 2006, 22, 1335-1342
    • (2006) Bioinformatics , vol.22 , pp. 1335-1342
    • Burgoyne, N.J.1    Jackson, R.M.2
  • 17
    • 84868026890 scopus 로고    scopus 로고
    • Dissecting Fragment-Based Lead Discovery at the von Hippel-Lindau Protein:Hypoxia Inducible Factor 1α Protein-Protein Interface
    • Van Molle, I.; Thomann, A.; Buckley, D. L.; So, E. C.; Lang, S.; M Crews, C.; Ciulli, A. Dissecting Fragment-Based Lead Discovery at the Von Hippel-Lindau Protein:Hypoxia Inducible Factor 1α Protein-Protein Interface Chem. Biol. 2012, 19, 1300-1312
    • (2012) Chem. Biol. , vol.19 , pp. 1300-1312
    • Van Molle, I.1    Thomann, A.2    Buckley, D.L.3    So, E.C.4    Lang, S.5    Crews C, M.6    Ciulli, A.7
  • 22
    • 0033553844 scopus 로고    scopus 로고
    • Characterization of Ligand Binding by Saturation Transfer Difference NMR Spectroscopy
    • Mayer, M.; Meyer, B. Characterization of Ligand Binding by Saturation Transfer Difference NMR Spectroscopy Angew. Chem., Int. Ed. 1999, 38, 1784-1788
    • (1999) Angew. Chem., Int. Ed. , vol.38 , pp. 1784-1788
    • Mayer, M.1    Meyer, B.2
  • 23
    • 0035695509 scopus 로고    scopus 로고
    • CPMG Sequences with Enhanced Sensitivity to Chemical Exchange
    • Wang, C.; Grey, M.; Palmer, A. CPMG Sequences with Enhanced Sensitivity to Chemical Exchange J. Biomol. NMR 2001, 21, 361-366
    • (2001) J. Biomol. NMR , vol.21 , pp. 361-366
    • Wang, C.1    Grey, M.2    Palmer, A.3
  • 24
    • 0033789206 scopus 로고    scopus 로고
    • Identification of Compounds with Binding Affinity to Proteins via Magnetization Transfer from Bulk Water
    • Dalvit, C.; Pevarello, P.; Tatò, M.; Veronesi, M.; Vulpetti, A.; Sundström, M. Identification of Compounds with Binding Affinity to Proteins via Magnetization Transfer From Bulk Water J. Biomol. NMR 2000, 18, 65-68
    • (2000) J. Biomol. NMR , vol.18 , pp. 65-68
    • Dalvit, C.1    Pevarello, P.2    Tatò, M.3    Veronesi, M.4    Vulpetti, A.5    Sundström, M.6
  • 25
    • 0034823890 scopus 로고    scopus 로고
    • Group Epitope Mapping by Saturation Transfer Difference NMR to Identify Segments of a Ligand in Direct Contact with a Protein Receptor
    • Mayer, M.; Meyer, B. Group Epitope Mapping by Saturation Transfer Difference NMR to Identify Segments of a Ligand in Direct Contact with a Protein Receptor J. Am. Chem. Soc. 2001, 123, 6108-6117
    • (2001) J. Am. Chem. Soc. , vol.123 , pp. 6108-6117
    • Mayer, M.1    Meyer, B.2
  • 26
    • 65749101148 scopus 로고    scopus 로고
    • VHL Mutations Linked to Type 2C von Hippel-Lindau Disease Cause Extensive Structural Perturbations in pVHL
    • Knauth, K.; Cartwright, E.; Freund, S.; Bycroft, M.; Buchberger, A. VHL Mutations Linked to Type 2C Von Hippel-Lindau Disease Cause Extensive Structural Perturbations in pVHL J. Biol. Chem. 2009, 284, 10514-10522
    • (2009) J. Biol. Chem. , vol.284 , pp. 10514-10522
    • Knauth, K.1    Cartwright, E.2    Freund, S.3    Bycroft, M.4    Buchberger, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.