Molecular insights into the purple-flowered ancestor of garden petunias

American Journal of Botany

Volumn 101, Issue 1, 2014, Pages 119-127

  Segatto, Ana Lúcia A ^a   Ramos Fregonezi, Aline M C ^a   Bonatto, Sandro L ^b   Freitas, Loreta B ^a  

^a FEDERAL UNIVERSITY OF RIO GRANDE DO SUL   (Brazil)

^b PONTIFICAL CATHOLIC UNIVERSITY OF RIO GRANDE DO SUL   (Brazil)

Author keywords

Cultivated plant origin; Genetic diversity; Petunia integrifolia group; Petunia xhybrida; Solanaceae

Indexed keywords

BIOMARKER; DICOTYLEDON; EVOLUTIONARY BIOLOGY; FLOWER; GARDEN; GENETIC VARIATION; HYBRID; LIFE HISTORY TRAIT; MOLECULAR ANALYSIS; PLASTID;

CHLOROPLAST DNA; MICROSATELLITE DNA;

ALLELE; ARTICLE; BAYES THEOREM; CULTIVATED PLANT ORIGIN; FLOWER; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; HAPLOTYPE; NUCLEOTIDE SEQUENCE; PETUNIA; PETUNIA INTEGRIFOLIA GROUP; PETUNIA ×HYBRIDA; PHYLOGENY; PIGMENTATION; PLASTID; PRINCIPAL COMPONENT ANALYSIS; SOLANACEAE;

CULTIVATED PLANT ORIGIN; GENETIC DIVERSITY; PETUNIA INTEGRIFOLIA GROUP; PETUNIA ×HYBRIDA; SOLANACEAE;

ALLELES; BASE SEQUENCE; BAYES THEOREM; DNA, CHLOROPLAST; FLOWERS; GENETIC VARIATION; GEOGRAPHY; HAPLOTYPES; MICROSATELLITE REPEATS; PETUNIA; PHYLOGENY; PIGMENTATION; PLASTIDS; PRINCIPAL COMPONENT ANALYSIS;

EID: 84892576168     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.3732/ajb.1300223     Document Type: Article

References (53)

1. Ando T and G Hashimoto. 1998. Two new species of Petunia (Solanaceae) from southern Rio Grande do Sul, Brazil. Brittonia 50: 483-492.
2. Ando T, N. Ishikawa, H. Watanabe, H. Kokubun, Y. Yanagisawa, G. Hashimoto, E. Marchesi and E. Suárez. 2005. A morphological study of the Petunia integrifolia complex (Solanaceae). Annals of Botany 96: 887-900.
3. Ando T, H. Kokubun, H. Watanabe, N. Tanaka, T. Yukawa, G. Hashimoto, E. Marchesi et al. 2005. Phylogenetic analysis of Petunia sensu Jussieu (Solanaceae) using chloroplast DNA RFLP. Annals of Botany 96: 289-297.
4. Bandelt, H.J., P. Forster and A Röhl. 1999. Median-joining networks for inferring intraspecifi c phylogenies. Molecular Biology and Evolution 16: 37-48.
5. Chen S, K. Matsubara, T. Omori, H. Kokubun, H. Kodama, H. Watanabe, G. Hashimoto et al. 2007. Phylogenetic analysis of the genus Petunia (Solanaceae) based on the sequence of the Hf1 gene. Journal of Plant Research 120: 385-397.
6. Dell'Olivo A, M.E. Hoballah, T. Gübitz and C. Kuhlemeier. 2011. Isolation barriers between Petunia axillaris and Petunia integrifolia (Solanaceae). Evolution 65: 1979-1991.
7. Derepas A and H Dulieu. 1992. Inheritance of the capacity to transfer plastids by pollen parent in Petunia hybrida. Horticultural Journal of Heredity 83: 6-10.
8. Dole, J.M., and H.F. Wilkins. 2004. Floriculture: Principles and species, 2nd ed. Prentice Hall, Upper Saddle River, New Jersey, USA.
9. Drummond, A.J., and A Rambaut. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7: 214.
10. Dun, I.S., and F.R. Blattner. 1987. Charons 36 to 40: Multi-enzyme, high capacity, recombination defi cient replacement vectors with polylinkers and polystuffers. Nucleic Acids Research 15: 2677-2698.
11. Evanno, G., S. Regnaut and J Goudet. 2005. Detecting the number of clusters of individuals using the software structure: A simulation study. Molecular Ecology 14: 2611-2620.
12. Excoffier L and H.E.L. Lischer. 2010. Arlequin suite ver. 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources 10: 564-567.
13. Falush D, M. Stephens and JK Pritchard. 2003. Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies. Genetics 164: 1567-1587.
14. Ferguson, M.C., and A.M. Ottley. 1932. Studies on Petunia III. A redescription and additional discussion of certain species of Petunia. American Journal of Botany 19: 385-405.
15. Fries, R.E. 1911. Die Arten der Gattung Petunia. Kungliga Svenska Vetenskapsakad Handlingar 46: 1-72.
16. Garcia-Lor A, F. Curk, H. Snoussi-Trifa, R. Morillon., G. Ancillo, F. Luro, L. Navarro and P. Ollitrault. 2013. A nuclear phylogenetic analysis: SNPs, indels and SSRs deliver new insights into the relationships in the 'true citrus fruit trees' group (Citrinae, Rutaceae) and the origin of cultivated species. Annals of Botany 111: 1-19.
17. Gerats T and M Vandenbussche. 2005. A model system for comparative research: Petunia. Trends in Plant Science 10: 251-256.
18. Goudet, J. 1995. FSTAT version 1.2: A computer program to calculate F-statistics. Journal of Heredity 86: 485-486. Version 2.9.3.2, available at website http://www2.unil.ch/popgen/softwares/fstat.htm.
19. Griesbach, R. J. 2007. Petunia ×hybrida. In N. O. Anderson [ed.], Flower breeding and genetics-Issues, challenges and opportunities for the 21st century, 301-336. Springer, New York, New York, USA.
20. Hamilton, M.B. 1999. Four primers pairs for the amplifi cation of chlo-roplast intergenic regions with intraspecifi c variation. Molecular Ecology 8: 521-523.
21. Hammer, Ø., D.A.T. Harper and PD Ryan. 2001. PAST: Paleontological Statistics Software Package for Education and Data Analysis. Palaeontologia Electronica 4: 9.
22. Jakobsson M and N.A. Rosenberg. 2007. CLUMPP: A cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23: 1801-1806.
23. Kalinowski, S.T., M.L. Taper and T.C. Marshall. 2007. Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Molecular Ecology 16: 1099-1106.
24. Kriedt, R.A., A.M.C. Ramos-Fregonezi, L.B. Beheregaray, S.L. Bonatto and L.B. Freitas. 2011. Isolation, characterization and cross-amplifi cation of microsatellite markers for Petunia in-tegrifolia (Solanaceae) complex. American Journal of Botany 9 8: e277-e279.
25. Kulcheski, F.R., V.C. Muschner, A.P. Lorenz-Lemke, J.R. Stehmann, S.L. Bonatto, F. M. Salzano and L B F reitas. 2006. Molecular phylogenetic analysis of Petunia Juss. (Solanaceae). Genetica 126: 3-14.
26. Lorenz-Lemke, A.P., G. Mäder, V.C. Muschner, J.R. Stehmann, S.L. Bonatto, F.M. Salzano and LB Freitas. 2006. Diversity and natural hybridization in a highly endemic species of Petunia (Solanaceae): A molecular and ecological analysis. Molecular Ecology 15: 4487-4497.
27. Lorenz-Lemke, A.P., P.D. Togni, G. Mäder, RA Kriedt, J.R. Stehmann, S.L. Bonatto FM Salzano and L.B. Freitas. 2010. Diversifi cation of plant species in a subtropical region of eastern South American highlands: A phylogeographic perspective on native Petunia (Solanaceae). Molecular Ecology 19: 5240-5251.
28. Marshall, T.C., J Slate, L.E.B. Kruuk and J.M. Pemberton. 1998. Statistical confidence for likelihood-based paternity inference in natural populations. Molecular Ecology 7: 639-655.
29. Minch E, A Ruiz-Linares, D.B. Goldstein, MW Feldmann and L.L. Cavalli-Sforza. 1997. Microsat (version 1.5d): A program for calculating statistics on microsatellite allele data. Computer program and documentation distributed by the author, website http://lotka.stanford.edu/microsat/microsat.html.
30. Moretzsohn, M.C., E.G. Gouvea, P.W. Inglis, S.C.M. Leal-Bertoli, J.F.M. Valls and D.J. Bertioli. 2013. A study of the relationships of cultivated peanut (Arachis hypogaea) and its most closely related wild species using intron sequences and microsatellite markers. Annals of Botany 111: 113-126.
31. Nicholas, K.B., H.B. Nicholas and D.W. Deerfield. 1997. GeneDoc: Analysis and visualization of genetic variation. Embnew News 4: 1-4.
32. Pritchard, J.K., M. Stephens and P Donnelly. 2000. Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
33. Robbins, T.P., R.M. Harbord,T Sonneveld and K Clarke. 2000. The molecular genetics of self-incompatibility in Petunia hybrida. Annals of Botany 85: 105-112.
34. Rosenberg N.A. 2004. distruct: A program for the graphical display of population structure. Molecular Ecology Notes 4: 137-138.
35. Roy A, N. Frascaria, J. MacKay and J Bousquet. 1992. Segregating random amplifi ed polymorphic DNAs (RAPDs) in Betula alleghanien-sisis. Theoretical and Applied Genetics 85: 173-180.
36. Saitou N and M Nei. 1987. The neighbor-joining method-A new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4: 406-425.
37. Sang, T., D.J. Crawford and T.F. Stuessy. 1997. Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae). American Journal of Botany 84: 1120-1136.
38. Sia, E.A., A.C. Butler, M Dominska, P Greenwell, T.D. Fox and T.D. Petes. 2000. Analysis of microsatellite mutations in the mitochon-drial DNA of Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences, USA 97: 250-255.
39. Simmons, M.P., H. Ochoterena and T.G. Carr. 2001. Incorporation, relative homoplasy, and effect of gap characters in sequence-based phylogenetic analysis. Systematic Biology 50: 454-462.
40. Sims, T.L., and T.P. Robbins. 2009. Gametophytic self-incompatibility in Petunia. In T. Gerats and J. Strommer [eds.], Petunia evolutionary, developmental and physiological genetics, 85-106. Springer, New York, New York, USA.
41. Sink, K.C. 1975. Inheritance of three genes for morphological characters in Petunia hybrida in crosses with four Petunia species. Canadian Journal of Genetics and Cytology 17: 67-74.
42. Sink, K.C. 1984. Taxonomy. In K. C. Sink [ed.], Petunia, 3-9. Springer, New York, New York, USA.
43. Smith L.B., and R.J. Downs. 1966. Petunia. In P. R. Reitz [ed.], Flora Ilustrada Catarinense. Solanaceae, 261-291. Itajaí, Herbário Barbosa Rodrigues, Brasil.
44. Stehmann, J.R., A.P. Lorenz-Lemke, L.B Freitas and J Semir. 2009. The genus Petunia. In T. Gerats and J. Strommer [eds.], Petunia evolutionary, developmental and physiological genetics, 1-28. Springer, New York, New York, USA.
45. Stout, A.B. 1952. Reproduction on Petunia. Memoires of the Torrey Botanical Club 20: 1-202.
46. Tamura K, D. Peterson, N. Peterson, G. Stecher, M. Nei and S. Kumar 2011. MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 28: 2731-2739.
47. Tsukamoto T., T. Ando, K. Takahashi, T. Omori, H. Watanabe, H. Kokubun, E. Marchesi and T. Kao. 2003. Breakdown of self-incompatibility in a natural population of Petunia axillaris caused by loss of pollen function. Plant Physiology 131: 1903-1912.
48. Van der Pijl, L. 1982. Principles of dispersal in higher plants. Springer-Verlag, Berlin, New York, USA.
49. Waits, L.P., G. Luikart and P Taberlet. 2001. Estimating the probability of identity among genotypes in natural populations: cautions and guidelines. Molecular Ecology 10: 249-256.
50. Wijsman H.J.W. 1982. On the inter-relationships of certain species of Petunia I. Taxonomic notes on the parental species of Petunia hy-brida. Acta Botanica Neerlandica 31: 447-490.
51. D. Wittmann, R. Radtke, J.R. Cure and M.T. Schifino-Wittmann 1990. Coevolved reproductive strategies in the oligolectic bee Callonychium petuniae (Apoidea, Andrenidae) and three purple fl owered Petunia species (Solanaceae) in southern Brazil. Journal of Zoological Systematics and Evolutionary Research 28: 157-165.
52. Zhang X., H. Takahashi, I. Nakamura and M. Mii. 2008. Molecular evidence for progenitorial species of garden petunias using polymerase chain reaction-restriction fragment length polymorphism analysis of the Chs-j gene. HortScience 43: 300-303.
53. Zhang X., H. Takahashi, I. Nakamura and M. Mii. 2008. Molecular discrimination among taxa of Petunia axillaris complex and P. integ-rifolia complex based on PolA1 sequence analysis. Breeding Science 58: 71-75.