Monitoring of geosmin producing Anabaena circinalis using quantitative PCR

Water Research

Volumn 49, Issue , 2014, Pages 416-425

  Tsao, Hsiang Wei ^a   Michinaka, Atsuko ^a   Yen, Hung Kai ^a,b   Giglio, Steven ^c   Hobson, Peter ^c   Monis, Paul ^c   Lin, Tsair Fuh ^a  

^a NATIONAL CHENG KUNG UNIVERSITY   (Taiwan)

^b MEIHO UNIVERSITY   (Taiwan)

^c AUSTRALIAN WATER QUALITY CENTRE   (Australia)

Author keywords

Anabaena circinalis; Geosmin synthesis gene; Monitoring; Quantitative PCR; Reservoir

Indexed keywords

GAS CHROMATOGRAPHY; GENE ENCODING; POLYMERASE CHAIN REACTION; PROBES; SURFACE WATERS;

ANABAENA CIRCINALI; CYANOBACTERIUM; DRINKING WATER SYSTEMS; FLAVOR CHEMICALS; GENES ENCODING; GEOSMIN; GEOSMIN SYNTHESIS GENE; OFF-FLAVOURS; QUANTITATIVE PCR; REAL-TIME PCR (QPCR);

POTABLE WATER;

DRINKING WATER; GEOSMIN; SURFACE WATER;

DRINKING WATER; ENVIRONMENTAL MONITORING; ORGANIC COMPOUND; POLYMERASE CHAIN REACTION; RESERVOIR; SURFACE WATER;

ANABAENA; ANABAENA CIRCINALIS; ARTICLE; AUSTRALIA; CALIBRATION; CELL COUNT; CELL COUNTING; CONTROLLED STUDY; MASS FRAGMENTOGRAPHY; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; TAIWAN;

AUSTRALIA; TAIWAN;

ANABAENA CIRCINALIS; CYANOBACTERIA;

ANABAENA CIRCINALIS; GEOSMIN SYNTHESIS GENE; MONITORING; QUANTITATIVE PCR; RESERVOIR;

ANABAENA; AUSTRALIA; ENVIRONMENTAL MONITORING; GENES, BACTERIAL; GEOGRAPHY; NAPHTHOLS; REAL-TIME POLYMERASE CHAIN REACTION; REFERENCE STANDARDS; TIME FACTORS;

EID: 84892517473     PISSN: 00431354     EISSN: 18792448     Source Type: Journal    
DOI: 10.1016/j.watres.2013.10.028     Document Type: Article

References (35)

1. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J.H., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25(17):3389-3402.
2. APHA Standard Methods for the Examination of Water and Wastewater 1992, American Public Health Association, Washington, DC. eighteenth ed.
3. Auffret M., Pilote A., Proulx E., Proulx D., Vandenberg G., Villemur R. Establishment of a real-time PCR method for quantification of geosmin-producing Streptomyces spp. in recirculating aquaculture systems. Water Res. 2011, 45(20):6753-6762.
4. Cook D., Newcombe G., Sztajnbok P. The application of powdered activated carbon for MIB and geosmin removal: predicting PAC doses in four raw waters. Water Res. 2001, 35(5):1325-1333.
5. Dixon M.B., Richard Y., Ho L., Chow C.W.K., O'Neill B.K., Newcombe G. A coagulation-powdered activated carbon-ultrafiltration - multiple barrier approach for removing toxins from two Australian cyanobacterial blooms. J. Hazard. Mater. 2011, 186(2-3):1553-1559.
6. Du H., Lu H., Xu Y., Du X.W. Community of environmental Streptomyces related to geosmin development in Chinese liquors. J. Agric. Food Chem. 2013, 61:1343-1348.
7. Giglio S., Jiang J., Saint C.P., Cane D.E., Monis P.T. Isolation and characterization of the gene associated with geosmin production in cyanobacteria. Environ. Sci. Technol. 2008, 42(21):8027-8032.
8. Giglio S., Saint C.P., Monis P.T. Expression of the geosmin synthase gene in the cyanobacterium Anabaena circinalis AWQC318. J. Phycol. 2011, 47:1338-1343.
9. Hobson P., Fazekas C., House J., Daly R., Kildea T., Giglio S., Burch M., Lin T.F., Chen Y.M. Tastes and Odours in Reservoirs 2010, Research Report 73, Water Quality Research Australia, Adelaide, South Australia.
10. Izaguirre G., Taylor W.D. A pseudanabaena species from Castaic Lake, California, that produces 2-methylisoborneol. Water Res. 1998, 32(5):1673-1677.
11. Jones G.J., Korth W. In situ production of volatile odor compounds by river and reservoir phytoplankton populations in Australia. Water Sci. Technol. 1995, 31(11):145-151.
12. Jüttner F., Watson S.B. Biochemical and ecological control of geosmin and 2-methylisoborneol in source waters. Appl. Environ. Microbiol. 2007, 73(14):4395-4406.
13. Kim Y., Lee Y., Gee C.S., Choi E. Treatment of taste and odor causing substances in drinking water. Water Sci. Technol. 1997, 35(8):29-36.
14. Koskenniemi K., Lyra C., Rajaniemi-Wacklin P., Jokela J., Sivonen K. Quantitative real-time PCR detection of toxic Nodularia cyanobacteria in the Baltic Sea. Appl. Environ. Microbiol. 2007, 73(7):2173-2179.
15. Lewis D.M., Elliott J.A., Brookes J.D., Irish A.E., Lambert M.F., Reynolds C.S. Modelling the effects of artificial mixing and copper sulphate dosing on phytoplankton in an Australian reservoir. Lakes Reservoirs: Res. Manage. 2003, 8(1):31-40.
16. Li Z., Yu J., Yang M., Zhang J., Burch M.D., Han W. Cyanobacterial population and harmful metabolites dynamics during a bloom in Yanghe Reservoir, North China. Harmful Algae 2010, 9(5):481-488.
17. Lin T.F., Wong J.Y., Kao H.P. Correlation of musty odor and 2-MIB in two drinking water treatment plants in South Taiwan. Sci. Total Environ. 2002, 289(1-3):225-235.
18. Lylloff J.E., Mogensen M.H., Burford M.A., Schluter L., Jorgensen N.O.G. Detection of aquatic Streptomycetes by quantitative PCR for prediction of taste-and-odour episodes in water reservoirs. J. Water Supply Res. Technol.-aqua 2012, 61:272-282.
19. Ludwig F., Medger A., Börnick H., Opitz M., Lang K., Göttfert M., Röske I. Identification and expression analyses of putative sesquiterpene synthase genes in Phormidium sp. and prevalence of geoA-like genes in a drinking water reservoir. Appl. Environ. Microbiol. 2007, 73:6988-6993.
20. Marbun Y.R., Yen H.K., Lin T.F., Lin H.L., Michinaka A. Rapid on-site monitoring of cylindrospermopsin-producers in reservoirs using quantitative PCR. Sust. Environ. Res. 2012, 22:143-151.
21. Monis P.T., Giglio S., Saint C.P. Comparison of SYTO9 and SYBR green I for real-time polymerase chain reaction and investigation of the effect of dye concentration on amplification and DNA melting curve analysis. Anal. Biochem. 2005, 340:24-34.
22. Michinaka A., Yen H.K., Chiu Y.T., Tsao H.W., Lin T.F. Rapid on-site multiplex assays for total and toxigenic Microcystis by real-time PCR with microwave cell disruption. Water Sci. Technol. 2012, 66:1246-1252.
23. Naes H., Utkilen H.C., Post A.F. Geosmin production in the cyanobacterium Oscillatoria brevis. Arch. Microbiol. 1989, 151(5):407-410.
24. Nerenberg R., Rittmann B.E., Soucie W.J. Ozone/biofiltration for removing MIB and geosmin. J. Am. Water Works Assoc. 2000, 92(12). 85-+.
25. Rasmussen J.P., Giglio S., Monis P.T., Campbell R.J., Saint C.P. Development and field testing of a real-time PCR assay for cylindrospermopsin-producing cyanobacteria. J. Appl. Microbiol. 2008, 104(5):1503-1515.
26. Rippka R. Isolation and purification of cyanobacteria. Meth. Enzymol. 1988, 167:3-27.
27. Robarts R.D., Zohary T. Temperature effects on photosynthetic capacity, respiration, and growth-rates of bloom-forming cyanobacteria. New Zealand J. Mar. Freshw. Res. 1987, 21(3):391-399.
28. Saadoun I.M.K., Schrader K.K., Blevins W.T. Environmental and nutritional factors affecting geosmin synthesis by Anabaena sp. Water Res. 2001, 35(5):1209-1218.
29. Shaw G.R., Sukenik A., Livne A., Chiswell R.K., Smith M.J., Seawright A.A., Norris R.L., Eaglesham G.K., Moore M.R. Blooms of the cylindrospermopsin containing cyanobacterium, Aphanizomenon ovalisporum (Forti), in newly constructed lakes, Queensland, Australia. Environ. Toxicol. 1999, 14(1):167-177.
30. Smith V.H., Sieber-Denlinger J., deNoyelles F., Campbell S., Pan S., Randtke S.J., Blain G.T., Strasser V.A. Managing taste and odor problems in a eutrophic drinking water reservoir. Lake Reservoir Manage. 2002, 18(4):319-323.
31. Su M., Gaget V., Burch M., An W., Yang M. Establishment of quantitative PCR methods for the quantification of geosmin-producing potential and Anabaena sp. in freshwater systems. Water Res. 2013, 47:3444-3454.
32. Utkilen H.C., Frøshaug M. Geosmin production and excretion in a planktonic and benthic oscillatoria. Water Sci. Technol. 1992, 25(2):199-206.
33. Whelan J.A., Russell N.B., Whelan M.A. A method for the absolute quantification of cDNA using real-time PCR. J. Immunol. Methods 2003, 278(1-2):261-269.
34. Yen H.K., Lin T.F., Tseng I.C. Detection and quantification of major toxigenic Microcystis genotypes in Moo-Tan reservoir and associated water treatment plant. J. Environ. Monit. 2012, 14(2):687-696.
35. Zhang T., Li L., Song S., Chen W. Effects of temperature and light on the growth and geosmin production of Lyngbya kuetzingii (Cyanophyta). J. Appl. Phycol. 2009, 21:279-285.