An RGA-Derived SCAR Marker Linked to PLRV Resistance from Solanum tuberosum ssp. andigena

Plant Molecular Biology Reporter

Volumn 32, Issue 1, 2014, Pages 117-128

  Mihovilovich, Elisa ^a   Aponte, Mariela ^a   Lindqvist Kreuze, Hannele ^a   Bonierbale, Merideth ^a  

^a INTERNATIONAL POTATO CENTER   (Peru)

Author keywords

CAPS; Marker assisted selection; PLRV resistance; Resistance gene analog; SCAR; Solanum tuberosum ssp. andigena

Indexed keywords

ANDIGENA; POLEROVIRUS; POTATO LEAFROLL VIRUS; SOLANUM TUBEROSUM;

EID: 84892488086     PISSN: 07359640     EISSN: 15729818     Source Type: Journal    
DOI: 10.1007/s11105-013-0629-5     Document Type: Article

References (55)

1. Acquisition Distribution Unit (2008) Catalog of potato varieties. International Potato Center (CIP), Lima, Perú.
2. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
3. Bakker E, Prins P, Borm T, van der Vossen E, Uenk G, Arens M, de Boer J, van Eck H, Muskens M, Vossen J, van der Linden G, van Ham R, Klein-Lankhorst R, Visser R, Smant G, Bakker J, Goverse A (2011) A genome wide genetic map of NB-LRR disease resistance loci in potato. Theor Appl Genet 123: 493-508.
4. Ballvora A, Ercolano MR, Weiss J, Meksem K, Bormann CA, Oberhagemann P, Salamini F, Gebhardt C (2002) The R1 gene for potato resistance to late blight (Phytophthora infestans) belongs to the leucine zipper/NBS/LRR class of plant resistance genes. Plant J 30(3): 361-371.
5. Ballvora A, Jocker A, Viehover P, Ishihara H, Paal J, Meksem K, Bruggmann R, Schoof H, Weisshaar B, Gerbhardt C (2007) Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments. BMC Genomics 8: 112. doi: 10. 1186/1471- 2164-8-112.
6. Barker H, Waterhouse PM (1999) The development of resistance to luteoviruses mediated by host genes and pathogen-derived transgenes. In: Smith HG, Barker H (eds) The Luteoviridae. CABI Publishing, Wallingford, UK, pp 169-210.
7. Barker H, Reavy B, Kumar A, Webster KD, Mayo MA (1992) Restricted virus multiplication in potatoes transformed with the coat protein gene of potato leafroll luteovirus: similarities with a type of host gene-mediated resistance. Ann Appl Biol 120: 55-64.
8. Beekman AGB (1987) Breeding for resistance. In: de Bokx JA, van der Want JPH (eds) Viruses of potatoes and seed-potato production. Pudoc, Wageningen, The Neatherlands, pp 162-170.
9. Bonierbale M, Amorós W, Landeo J (2003) Improved resistance and quality in potatoes for the tropics. In: Proceedings of the XXVI International Horticultural Congress August 11-17. Toronto, Canada. Acta Horticult 619: 15-22.
10. Brown CR (1979) General combining ability for PLRV resistance in andigena germplasm. Am Pot J 56: 456.
11. Brown CR, Thomas TE (1994) Resistance to potato leafroll virus derived from Solanum chacoense: characterization and inheritance. Euphytica 74: 51-57.
12. Brown CR, Corsini D, Pavek J, Thomas PE (1997) Heritability of field resistance to potato leafroll virus in cultivated potato. Plant Breed 116: 585-588.
13. Brugmans B, van der Hulst RGM, Visser RGF, Lindhout P, van Eck HJ (2003) A new versatile method for the successful conversion of AFLP markers into simple single locus markers. Nucleic Acids Res 31(10): e55.
14. Chavez R, Brown CR, Iwanaga M (1988) Transfer of resistance to PLRV titer buildup from Solanum etuberosum to a tuber-bearing Solanum gene pool. Theor Appl Genet 76: 129-135.
15. Chuquillanqui C, Jones RAC (1980) A rapid technique for assessing the resistance of families of potato seedlings to potato leaf roll virus. Potato Res 23: 121-128.
16. CIP (2000) Molecular biology laboratory protocols: plant genotyping. In: Herrera MDR, Ghislain M, Zhang D (eds) Crop Improvement and Genetic Resources Department Training Manual, 3rd edn. International Potato Center (CIP), Lima, Peru.
17. Davidson TMW (1973) Assessing resistance to leafroll in potato seedlings. Potato Res 16: 99-108.
18. Dziewonska M, Was M (1994) Diploid genotype DW. 84-1457 highly resistant to potato leafroll virus (PLRV). Potato Res 37: 217-224.
19. Flis B, Hennig J, Strzelczyk-Zyta D, Gebhardt C, Marczewski W (2005) The Ry-fsto gene from Solanum stoloniferum for extreme resistant to potato virus Y maps to potato chromosome XII and is diagnosed by PCR marker GP122718 in PVY resistant potato cultivars. Mol Breed 15: 95-101.
20. Gebhardt C, Bellin D, Henselewski H, Lehmann W, Schwarzfischer J, Valkonen JPT (2006) Marker-assisted combination of major genes for pathogen resistance in potato. Theor Appl Genet 112: 1458-1464.
21. Ghislain M, Zhang D, Herrera MR (1999) Molecular biology laboratory protocols: plant genotyping training manual, 2nd edn. International Potato Center (CIP), Lima.
22. Hackett CA, Luo ZW (2003) TetraploidMap: construction of a linkage map in autotetraploid species. J Hered 94(4): 358-359.
23. Hämäläinen JH, Watanabe KN, Valkonen JPT, Arihara A, Plaisted RL, Pehu E, Miller L, Slack SA (1997) Mapping and marker-assisted selection for a gene for extreme resistance to potato virus Y. Theor Appl Genet 94: 192-197.
24. Hawkes JG (1990) The potato evolution, biodiversity, and genetic resources. Belhaven Press, London (UK).
25. Huamán Z (1995) Técnicas citológicas para determinar el número cromosómico y la fertilidad de las papas. Guía de Investigación CIP 10. Centro Internacional de la Papa, Lima, p 18.
26. Huarte MA, Butzonitch IP, Mendiburo AO (1990) Mejoramiento para resistencia a virus en el programa argentino de papa. In: Hidalgo OA, Rincón H (eds) Avances en el mejoramiento genético de la papa en los países del cono sur. Centro Internacional de la Papa, Lima, Perú, pp 85-93.
27. Jansky S (2000) Breeding for disease resistance in potato. Plant Breed Rev 19: 69-155.
28. Kasai K, Morikawa Y, Sorri VA, Valkonen JPT, Gebhardt C, Watanabe KN (2000) Development of SCAR markers to the PVY resistance gene Ryadg based on a common feature of plant disease resistance genes. Genome 43: 1-8.
29. Kelley KB, Whitworth JL, Novy RG (2009) Mapping of the potato leafroll virus resistance gene, Rlretb, from Solanum etuberosum identifies interchromosomal translocations among its E-genome chromosomes 4 and 9 relative to the A-genome of Solanum L. sect. Petota. Mol Breed 23: 489-500.
30. Kelly JD (1995) Use of random amplified polymorphic DNA markers in breeding for major gene resistance to plant pathogen. HortSci 30: 461-465.
31. Larkin M, Blackshields G, Brown N, Chenna R, McGettigan P, McWilliam H et al (2007) Clustal W and Clustal X version 2. 0. Bioinformatics 23(21): 2947-2948.
32. Leister D, Ballvora A, Salamini F, Gebhardt C (1996) A PCR-based approach for isolating pathogen resistance genes from potato with potential for wide application in plants. Nat Genet 14: 421429.
33. Leonards-Schippers C, Gieffers W, Schafer-Pregl R, Ritter E, Knapp SJ, Salamini F, Gebhardt C (1994) Quantitative resistance to Phytophthora infestans in potato: a case study for QTL mapping in an allogamous plant species. Genetics 137(1): 67-77, PMID: 7914505.
34. Marczewski W, Flis B, Syller J, Schäfer-Pregl R, Gebhardt C (2001) A major quantitative trait locus for resistance to potato leafroll virus is located in a resistance hotspot of potato chromosome XI and is tightly linked to N-gene-like markers. Mol Plant-Microbe Interact 14(12): 1420-1425.
35. Marczewski W, Flis B, Syller J, Strzelczyk-Zyta D, Hennig J, Gebhardt C (2004) Two allelic or tightly linked genetic factors at the PLRV. 4 locus on potato chromosome XI control resistance to potato leafroll virus accumulation. Theor Appl Genet 109: 1604-1609.
36. Meyers BC, Dickerman AW, Michelmore RW, Sivaramakrishnan S, Sobral B, Young ND (1999) Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily. Plant J 20: 317-332.
37. Michelmore RW, Paran I, Kesseli RV (1991) Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. Proc Nat Acad Sci USA 88: 9828-9832.
38. Mihovilovich E, Alarcón L, Pérez AL, Alvarado J, Arellano C, Bonierbale M (2007) High levels of heritable resistance to potato leafroll virus (PLRV) in Solanum tuberosum subsp. andigena. Crop Sci 47: 1091-1103.
39. Muñoz FJ, Plaisted RL, Thurston HD (1975) Resistance to potato virus Y in Solanum tuberosum ssp. andigena. Am Pot J 52: 107-115.
40. Novy RG, Gillen AM, Whitworth JL (2007) Characterization of the expression and inheritance of potato leafroll virus (PLRV) and potato virus Y (PVY) resistance in three generations of germplasm derivedfrom Solanum etuberosum. Theor Appl Genet 114: 1161-1172.
41. Oberhagemann P, Chatot-Balandras C, Schafer-Pregl R, Wegener D, Palomino C, Salamini F, Bonnel E, Gebhardt C (1999) A genetic analysis of quantitative resistance to late blight in potato: towards marker-assisted selection. Mol Breed 5: 399-415.
42. Ortiz R (2001) The state of the use of potato genetic diversity. In: Cooper HD, Spillane C, Hodgkin T (eds) Broadening the genetic base of crop production. CABI Publishing, Wallingford, pp 181-200.
43. Rozen S, Skaletsky HJ (2000) Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S (eds) Bioinformatics Methods and Protocols: Methods in Molecular Biology. Humana Press, Totowa, NJ, pp 365-386.
44. Solomon-Blackburn RM, Barker H (1993) Resistance to potato, leafroll luteovirus can be greatly improved by combining two independent types of heritable resistance. Ann Appl Biol 122: 329-336.
45. Solomon-Blackburn RM, Barker H (2001) Breeding virus-resistant potatoes (Solanum tuberosum): a review of traditional and molecular approaches. Heredity 86: 17-35.
46. Solomon-Blackburn RM, Mackay GR, Brown J (1994) An evaluation of seedling progeny tests for resistance to potato leafroll virus in potato. J Agric Sci 122: 231-239.
47. Sorri VA, Watanabe KN, Valkonen JPT (1999) Predicted kinase-3a motif of a resistance gene analogue as a unique marker for virus resistance. Theor Appl Genet 99: 164-170.
48. Syller J (1996) Potato leafroll virus (PLRV): its transmission and control. Integr Pest Manag Rev 1: 217-227.
49. Taliansky M, Mayo MA, Barker H (2003) Potato leafroll virus: a classic pathogen shows some new tricks. Mol Plant Pathol 4(2): 81-89.
50. Tarn TR, Tai GCC (1983) Tuberosum x Tuberosum and Tuberosum x Andigena potato hybrids: comparison of families and parents, and breeding strategies for andigena potatoes in long day temperate environments. Theor Appl Genet 57: 39-46.
51. Timmerman-Vaughan GM, Frew TJ, Weerden NF (2000) Characterization and linkage mapping of R-gene analogous DNA sequences in pea (Pisum sativum L). Theor Appl Genet 101: 241-247.
52. Trognitz BR, Bonierbale M, Landeo JA, Forbes G, Bradshaw JE, Mackay GR, Waugh R, Huarte MA Colon L (2001) Improving potato resistance to disease under the Global Initiative on Late Blight. In: Cooper HD, Spillane C, Hodgkin T (eds). Broadening the genetic base of crop production. CABI/FAO/IPGRI, 385-398.
53. Upadhya MD, Cabello R (1999) Interaction of maternal clones of potato (Solanum tuberosum) with pollinator clones of S. phureja for induced parthenogenesis. In: Impact on a changing world. Program Report 1997-98. International Potato Center, Lima, Perú, pp 179-184.
54. Velásquez AC, Mihovilovich E, Bonierbale M (2007) Genetic characterization and mapping of major gene resistance to potato leafroll virus in Solanum tuberosum ssp. andigena. Theor Appl Genet 114(6): 1051-1058.
55. Watanabe KN, Orrillo M (1993) An alternative pretreatment method for mitotic chromosome observation in potatoes. Am Potato J 70: 543-548.