메뉴 건너뛰기




Volumn 10, Issue 1, 2014, Pages 203-212

Inbreeding depression in intra-provenance crosses driven by founder relatedness in white spruce

Author keywords

Dominance; Genomic relationship matrix; Inbreeding; Inbreeding depression; Relatedness

Indexed keywords

PICEA GLAUCA;

EID: 84892487963     PISSN: 16142942     EISSN: 16142950     Source Type: Journal    
DOI: 10.1007/s11295-013-0676-y     Document Type: Article
Times cited : (18)

References (54)
  • 1
    • 0033942762 scopus 로고    scopus 로고
    • Estimation of variance components of quantitative traits in inbred populations
    • Abney M, McPeek MS, Ober C (2000) Estimation of variance components of quantitative traits in inbred populations. Am J Hum Genet 66(2): 629-650.
    • (2000) Am J Hum Genet , vol.66 , Issue.2 , pp. 629-650
    • Abney, M.1    McPeek, M.S.2    Ober, C.3
  • 3
    • 0141790880 scopus 로고    scopus 로고
    • DNA-based methods for pedigree reconstruction and kinship analysis in natural populations
    • Blouin MS (2003) DNA-based methods for pedigree reconstruction and kinship analysis in natural populations. Trends Ecol Evol 18(10): 503-511.
    • (2003) Trends Ecol Evol , vol.18 , Issue.10 , pp. 503-511
    • Blouin, M.S.1
  • 4
    • 0000332161 scopus 로고
    • A diallel cross in black spruce
    • Boyle T (1987) A diallel cross in black spruce. Genome 29(1): 180-186.
    • (1987) Genome , vol.29 , Issue.1 , pp. 180-186
    • Boyle, T.1
  • 5
    • 0001227056 scopus 로고
    • Multiple populations and sublines
    • Burdon RD, Namkoong G (1983) Multiple populations and sublines. Silvae Genet 5-6: 221-222.
    • (1983) Silvae Genet , vol.5-6 , pp. 221-222
    • Burdon, R.D.1    Namkoong, G.2
  • 6
    • 0004062224 scopus 로고    scopus 로고
    • Inbreeding depression in selfing experiments: statistical issues
    • Burdon RD, Russell JH (1998) Inbreeding depression in selfing experiments: statistical issues. For Genet 5(3): 179-189.
    • (1998) For Genet , vol.5 , Issue.3 , pp. 179-189
    • Burdon, R.D.1    Russell, J.H.2
  • 7
    • 78751648705 scopus 로고    scopus 로고
    • Marker-based adjustment of the additive relationship matrix for estimation of genetic parameters-an example using Eucalyptus cladocalyx
    • Bush D, Kain D, Matheson C, Kanowski P (2011) Marker-based adjustment of the additive relationship matrix for estimation of genetic parameters-an example using Eucalyptus cladocalyx. Tree Genet Genomes 7(1): 23-35.
    • (2011) Tree Genet Genomes , vol.7 , Issue.1 , pp. 23-35
    • Bush, D.1    Kain, D.2    Matheson, C.3    Kanowski, P.4
  • 8
    • 79960693332 scopus 로고    scopus 로고
    • QTLRel: an R package for genome-wide association studies in which relatedness is a concern
    • Cheng R, Abney M, Palmer A, Skol A (2011) QTLRel: an R package for genome-wide association studies in which relatedness is a concern. BMC Genet 12(1): 66.
    • (2011) BMC Genet , vol.12 , Issue.1 , pp. 66
    • Cheng, R.1    Abney, M.2    Palmer, A.3    Skol, A.4
  • 9
    • 0008112661 scopus 로고
    • Inbreeding in neighboring trees in two white spruce populations
    • Coles JF, Fowler DP (1976) Inbreeding in neighboring trees in two white spruce populations. Silvae Genet 25(1): 29-34.
    • (1976) Silvae Genet , vol.25 , Issue.1 , pp. 29-34
    • Coles, J.F.1    Fowler, D.P.2
  • 10
    • 78951477718 scopus 로고    scopus 로고
    • Semi-parametric genomic-enabled prediction of genetic values using reproducing kernel Hilbert spaces methods
    • de los Campos G, Gianola D, Rosa GJM, Weigel KA, Crossa J (2010) Semi-parametric genomic-enabled prediction of genetic values using reproducing kernel Hilbert spaces methods. Genet Res 92(04): 295-308.
    • (2010) Genet Res , vol.92 , Issue.4 , pp. 295-308
    • de los Campos, G.1    Gianola, D.2    Rosa, G.J.M.3    Weigel, K.A.4    Crossa, J.5
  • 11
    • 79958247198 scopus 로고    scopus 로고
    • Ecological and biological information improves inferred paternity in a white spruce breeding orchard
    • Doerksen TK, Deslauriers M, Beaulieu J (2011) Ecological and biological information improves inferred paternity in a white spruce breeding orchard. Can J For Res 41: 1344-1351.
    • (2011) Can J For Res , vol.41 , pp. 1344-1351
    • Doerksen, T.K.1    Deslauriers, M.2    Beaulieu, J.3
  • 12
    • 0029841093 scopus 로고    scopus 로고
    • Relationship between inbreeding depression and inbreeding coefficient in maritime pine (Pinus pinaster)
    • Durel CE, Bertin P, Kremer A (1996) Relationship between inbreeding depression and inbreeding coefficient in maritime pine (Pinus pinaster). Theor Appl Genet 92(3-4): 347-356.
    • (1996) Theor Appl Genet , vol.92 , Issue.3-4 , pp. 347-356
    • Durel, C.E.1    Bertin, P.2    Kremer, A.3
  • 14
    • 77749249761 scopus 로고    scopus 로고
    • MCMC methods for multi-response generalized linear mixed models: the MCMCglmm R package
    • Hadfield JD (2010) MCMC methods for multi-response generalized linear mixed models: the MCMCglmm R package. J Stat Softw 33(2): 1-22.
    • (2010) J Stat Softw , vol.33 , Issue.2 , pp. 1-22
    • Hadfield, J.D.1
  • 15
    • 33749222363 scopus 로고
    • Factors influencing levels of genetic diversity in woody plant species
    • Hamrick JL, Godt MJW, Sherman-Broyles SL (1992) Factors influencing levels of genetic diversity in woody plant species. New For 6(1-4): 95-124.
    • (1992) New For , vol.6 , Issue.1-4 , pp. 95-124
    • Hamrick, J.L.1    Godt, M.J.W.2    Sherman-Broyles, S.L.3
  • 16
    • 0029787655 scopus 로고    scopus 로고
    • A comparison of genetic information from open-pollinated and control-pollinated progeny tests in two eucalypt species
    • Hodge GR, Volker PW, Potts BM, Owen JV (1996) A comparison of genetic information from open-pollinated and control-pollinated progeny tests in two eucalypt species. Theor Appl Genet 92(1): 53-63.
    • (1996) Theor Appl Genet , vol.92 , Issue.1 , pp. 53-63
    • Hodge, G.R.1    Volker, P.W.2    Potts, B.M.3    Owen, J.V.4
  • 17
    • 8744227023 scopus 로고    scopus 로고
    • Genetic gains of full-sib families from disconnected diallels in loblolly pine
    • Jansson G, Li B (2004) Genetic gains of full-sib families from disconnected diallels in loblolly pine. Silvae Genet 53(2): 60-64.
    • (2004) Silvae Genet , vol.53 , Issue.2 , pp. 60-64
    • Jansson, G.1    Li, B.2
  • 18
    • 0035210240 scopus 로고    scopus 로고
    • Contrasting evolutionary forces driving population structure at expressed sequence tag polymorphisms, allozymes and quantitative traits in white spruce
    • Jaramillo-Correa JP, Beaulieu J, Bousquet J (2001) Contrasting evolutionary forces driving population structure at expressed sequence tag polymorphisms, allozymes and quantitative traits in white spruce. Mol Ecol 10(11): 2729-2740.
    • (2001) Mol Ecol , vol.10 , Issue.11 , pp. 2729-2740
    • Jaramillo-Correa, J.P.1    Beaulieu, J.2    Bousquet, J.3
  • 20
    • 9644266809 scopus 로고    scopus 로고
    • Effect of selfing on various economic traits in Pinus radiata and some implications for breeding strategy
    • Kumar S (2004) Effect of selfing on various economic traits in Pinus radiata and some implications for breeding strategy. For Sci 50(5): 571-578.
    • (2004) For Sci , vol.50 , Issue.5 , pp. 571-578
    • Kumar, S.1
  • 21
    • 15044341472 scopus 로고    scopus 로고
    • Inferring relatedness and heritability using molecular markers in radiata pine
    • Kumar S, Richardson TE (2005) Inferring relatedness and heritability using molecular markers in radiata pine. Mol Breeding 15(1): 55-64.
    • (2005) Mol Breeding , vol.15 , Issue.1 , pp. 55-64
    • Kumar, S.1    Richardson, T.E.2
  • 22
    • 77956399066 scopus 로고    scopus 로고
    • Using the realized relationship matrix to disentangle confounding factors for the estimation of genetic variance components of complex traits
    • Lee SH, Goddard ME, Visscher PM, van Der Werf JHJ (2010) Using the realized relationship matrix to disentangle confounding factors for the estimation of genetic variance components of complex traits. Genet Sel Evol 42: 22.
    • (2010) Genet Sel Evol , vol.42 , pp. 22
    • Lee, S.H.1    Goddard, M.E.2    Visscher, P.M.3    van Der Werf, J.H.J.4
  • 23
    • 70349300420 scopus 로고    scopus 로고
    • A relationship matrix including full pedigree and genomic information
    • Legarra A, Aguilar I, Misztal I (2009) A relationship matrix including full pedigree and genomic information. J Dairy Sci 92(9): 4656-4663.
    • (2009) J Dairy Sci , vol.92 , Issue.9 , pp. 4656-4663
    • Legarra, A.1    Aguilar, I.2    Misztal, I.3
  • 26
    • 35348814589 scopus 로고    scopus 로고
    • An overview on quantitative and genomic tools for utilising dominance genetic variation in improving animal production
    • Mäki-Tanila A (2007) An overview on quantitative and genomic tools for utilising dominance genetic variation in improving animal production. Agr Food Sci 16(2): 188-198.
    • (2007) Agr Food Sci , vol.16 , Issue.2 , pp. 188-198
    • Mäki-Tanila, A.1
  • 27
    • 0347980306 scopus 로고    scopus 로고
    • Estimation of variance components with large-scale dominance models
    • Misztal I (1997) Estimation of variance components with large-scale dominance models. J Dairy Sci 80(5): 965-974.
    • (1997) J Dairy Sci , vol.80 , Issue.5 , pp. 965-974
    • Misztal, I.1
  • 29
    • 0028254295 scopus 로고
    • Genetic parameters and age-age correlations in a clonally replicated test of black spruce after 10 years
    • Mullin TJ, Park YS (1994) Genetic parameters and age-age correlations in a clonally replicated test of black spruce after 10 years. Can J For Res 24(12): 2330-2341.
    • (1994) Can J For Res , vol.24 , Issue.12 , pp. 2330-2341
    • Mullin, T.J.1    Park, Y.S.2
  • 30
    • 0000021154 scopus 로고
    • Quantitative genetics of forest trees
    • Namkoong G, Kang H (1990) Quantitative genetics of forest trees. Plant Breed Rev 8: 139-188.
    • (1990) Plant Breed Rev , vol.8 , pp. 139-188
    • Namkoong, G.1    Kang, H.2
  • 31
    • 49249097861 scopus 로고    scopus 로고
    • Scanning the genome for gene single nucleotide polymorphisms involved in adaptive population differentiation in white spruce
    • Namroud MC, Beaulieu J, Juge N, Laroche J, Bousquet J (2008) Scanning the genome for gene single nucleotide polymorphisms involved in adaptive population differentiation in white spruce. Mol Ecol 17(16): 3599-3613.
    • (2008) Mol Ecol , vol.17 , Issue.16 , pp. 3599-3613
    • Namroud, M.C.1    Beaulieu, J.2    Juge, N.3    Laroche, J.4    Bousquet, J.5
  • 32
    • 38849171669 scopus 로고    scopus 로고
    • A Bayesian framework for comparative quantitative genetics
    • Ovaskainen O, Cano JM, Merilä J (2008) A Bayesian framework for comparative quantitative genetics. P R Soc B 275: 669-678.
    • (2008) P R Soc B , vol.275 , pp. 669-678
    • Ovaskainen, O.1    Cano, J.M.2    Merilä, J.3
  • 33
    • 85041988145 scopus 로고
    • A new class of resolvable incomplete block designs
    • Patterson HD, Williams ER (1976) A new class of resolvable incomplete block designs. Biometrika 63(1): 83-92.
    • (1976) Biometrika , vol.63 , Issue.1 , pp. 83-92
    • Patterson, H.D.1    Williams, E.R.2
  • 35
    • 8144228651 scopus 로고    scopus 로고
    • Measuring inbreeding depression in the wild: the old ways are the best
    • Pemberton J (2004) Measuring inbreeding depression in the wild: the old ways are the best. Trends Ecol Evol 19(12): 613-615.
    • (2004) Trends Ecol Evol , vol.19 , Issue.12 , pp. 613-615
    • Pemberton, J.1
  • 36
    • 67849083102 scopus 로고    scopus 로고
    • Ridge regression and extensions for genomewide selection in maize
    • Piepho HP (2009) Ridge regression and extensions for genomewide selection in maize. Crop Sci 49(4): 1165-1176.
    • (2009) Crop Sci , vol.49 , Issue.4 , pp. 1165-1176
    • Piepho, H.P.1
  • 37
    • 41149087694 scopus 로고    scopus 로고
    • CODA: convergence diagnosis and output analysis for MCMC
    • Plummer M, Best N, Cowles K, Vines K (2006) CODA: convergence diagnosis and output analysis for MCMC. R News 6(1): 7-11.
    • (2006) R News , vol.6 , Issue.1 , pp. 7-11
    • Plummer, M.1    Best, N.2    Cowles, K.3    Vines, K.4
  • 38
    • 84863304598 scopus 로고    scopus 로고
    • R Development Core Team, Vienna: R Foundation for Statistical Computing
    • R Development Core Team (2012) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna.
    • (2012) R: A Language and Environment for Statistical Computing
  • 39
    • 0030062576 scopus 로고    scopus 로고
    • Inferring the genetic basis of inbreeding depression in plants
    • Ritland K (1996) Inferring the genetic basis of inbreeding depression in plants. Genome 39(1): 1-8.
    • (1996) Genome , vol.39 , Issue.1 , pp. 1-8
    • Ritland, K.1
  • 40
    • 77949778188 scopus 로고    scopus 로고
    • On the use of large marker panels to estimate inbreeding and relatedness: empirical and simulation studies of a pedigreed zebra finch population typed at 771 SNPs
    • Santure AW, Stapley J, Ball AD, Birkhead TR, Burke T, Slate J (2010) On the use of large marker panels to estimate inbreeding and relatedness: empirical and simulation studies of a pedigreed zebra finch population typed at 771 SNPs. Mol Ecol 19(7): 1439-1451.
    • (2010) Mol Ecol , vol.19 , Issue.7 , pp. 1439-1451
    • Santure, A.W.1    Stapley, J.2    Ball, A.D.3    Birkhead, T.R.4    Burke, T.5    Slate, J.6
  • 41
    • 0031760929 scopus 로고    scopus 로고
    • Genetic components of variation in Nemophila menziesii undergoing inbreeding: morphology and flowering time
    • Shaw RG, Byers DL, Shaw FH (1998) Genetic components of variation in Nemophila menziesii undergoing inbreeding: morphology and flowering time. Genetics 150(4): 1649-1661.
    • (1998) Genetics , vol.150 , Issue.4 , pp. 1649-1661
    • Shaw, R.G.1    Byers, D.L.2    Shaw, F.H.3
  • 42
    • 79953059853 scopus 로고    scopus 로고
    • On statistical methods for estimating heritability in wild populations
    • Sillanpää MJ (2011) On statistical methods for estimating heritability in wild populations. Mol Ecol 20: 1324-1332.
    • (2011) Mol Ecol , vol.20 , pp. 1324-1332
    • Sillanpää, M.J.1
  • 44
    • 84866396804 scopus 로고    scopus 로고
    • Estimating additive and non-additive genetic variances and predicting genetic merits using genome-wide dense single nucleotide polymorphism markers
    • Su G, Christensen OF, Ostersen T, Henryon M, Lund MS (2012) Estimating additive and non-additive genetic variances and predicting genetic merits using genome-wide dense single nucleotide polymorphism markers. PLoS ONE 7(9): e45293.
    • (2012) PLoS ONE , vol.7 , Issue.9
    • Su, G.1    Christensen, O.F.2    Ostersen, T.3    Henryon, M.4    Lund, M.S.5
  • 45
    • 55849133422 scopus 로고    scopus 로고
    • Efficient methods to compute genomic predictions
    • VanRaden P (2008) Efficient methods to compute genomic predictions. J Dairy Sci 91(11): 4414-4423.
    • (2008) J Dairy Sci , vol.91 , Issue.11 , pp. 4414-4423
    • VanRaden, P.1
  • 46
    • 49849086923 scopus 로고    scopus 로고
    • Efficient Markov chain Monte Carlo implementation of Bayesian analysis of additive and dominance genetic variances in noninbred pedigrees
    • Waldmann P, Hallander J, Hoti F, Sillanpää MJ (2008) Efficient Markov chain Monte Carlo implementation of Bayesian analysis of additive and dominance genetic variances in noninbred pedigrees. Genetics 179(2): 1101-1112.
    • (2008) Genetics , vol.179 , Issue.2 , pp. 1101-1112
    • Waldmann, P.1    Hallander, J.2    Hoti, F.3    Sillanpää, M.J.4
  • 47
    • 27644499607 scopus 로고    scopus 로고
    • The struggle to exploit non-additive variation
    • Walsh B (2005) The struggle to exploit non-additive variation. Aust J Agr Res 56(9): 873-881.
    • (2005) Aust J Agr Res , vol.56 , Issue.9 , pp. 873-881
    • Walsh, B.1
  • 48
    • 0032772515 scopus 로고    scopus 로고
    • Inbreeding depression in three generations of selfed families of silver birch (Betula pendula)
    • Wang T, Hagqvist R, Tigerstedt PMA (1999) Inbreeding depression in three generations of selfed families of silver birch (Betula pendula). Can J For Res 29(6): 662-668.
    • (1999) Can J For Res , vol.29 , Issue.6 , pp. 662-668
    • Wang, T.1    Hagqvist, R.2    Tigerstedt, P.M.A.3
  • 50
    • 0029810627 scopus 로고    scopus 로고
    • Inbreeding depression in conifers: implications for breeding strategy
    • Williams CG, Savolainen O (1996) Inbreeding depression in conifers: implications for breeding strategy. For Sci 42(1): 102-117.
    • (1996) For Sci , vol.42 , Issue.1 , pp. 102-117
    • Williams, C.G.1    Savolainen, O.2
  • 51
    • 0032433836 scopus 로고    scopus 로고
    • Inbreeding in Pinus radiata. I. The effect of inbreeding on growth, survival and variance
    • Wu HX, Matheson AC, Spencer D (1998) Inbreeding in Pinus radiata. I. The effect of inbreeding on growth, survival and variance. Theor Appl Genet 97(8): 1256-1268.
    • (1998) Theor Appl Genet , vol.97 , Issue.8 , pp. 1256-1268
    • Wu, H.X.1    Matheson, A.C.2    Spencer, D.3
  • 52
    • 0036662190 scopus 로고    scopus 로고
    • Inbreeding in Pinus radiata. IV: the effect of inbreeding on wood density
    • Wu HX, Matheson AC, Abarquez A (2002) Inbreeding in Pinus radiata. IV: the effect of inbreeding on wood density. Ann For Sci 59(5-6): 557-562.
    • (2002) Ann For Sci , vol.59 , Issue.5-6 , pp. 557-562
    • Wu, H.X.1    Matheson, A.C.2    Abarquez, A.3
  • 53
    • 8744257783 scopus 로고    scopus 로고
    • Inbreeding in Pinus radiata - V. The effects of inbreeding on fecundity
    • Wu HX, Owen JV, Abarquez A, Matheson AC (2004) Inbreeding in Pinus radiata - V. The effects of inbreeding on fecundity. Silvae Genet 53(2): 80-87.
    • (2004) Silvae Genet , vol.53 , Issue.2 , pp. 80-87
    • Wu, H.X.1    Owen, J.V.2    Abarquez, A.3    Matheson, A.C.4
  • 54
    • 0029831611 scopus 로고    scopus 로고
    • General and specific combining ability from disconnected partial diallels of coastal Douglas-fir
    • Yanchuk AD (1996) General and specific combining ability from disconnected partial diallels of coastal Douglas-fir. Silvae Genet 45(1): 37-45.
    • (1996) Silvae Genet , vol.45 , Issue.1 , pp. 37-45
    • Yanchuk, A.D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.