Impact of human-induced environmental changes on genetic structure and variability in Atlantic salmon, Salmo salar

Fisheries Management and Ecology

Volumn 21, Issue 1, 2014, Pages 32-41

  Johnsen, A ^a   Brabrand, Å ^a   Anmarkrud, J A ^a,b   Bjornstad G ^a   Pavels, H ^a   Saltveit, S J ^a  

^a UNIVERSITY OF OSLO   (Norway)

^b OSLO UNIVERSITY HOSPITAL   (Norway)

Author keywords

Bottleneck; Fish scales; Microsatellites; Neutral genetic variation; Population differentiation; Rotenone

Indexed keywords

ANTHROPOGENIC EFFECT; DNA FINGERPRINTING; ECTOPARASITE; ENVIRONMENTAL CHANGE; GENETIC STRUCTURE; GENETIC VARIATION; POPULATION BOTTLENECK; SALMONID;

BATNFJORDELVA RIVER; LAERDALSELVA RIVER; MORE OG ROMSDAL; NORWAY; SOGN OG FJORDANE;

GYRODACTYLUS SALARIS; SALMO SALAR;

EID: 84892476292     PISSN: 0969997X     EISSN: 13652400     Source Type: Journal    
DOI: 10.1111/fme.12049     Document Type: Article

References (55)

1. Aas Ø., Klemetsen A., Einum S. & Skurdal J. (eds) (2011) Atlantic Salmon Ecology. Oxford: Wiley-Blackwell, 496 pp.
2. Appleby C., Mo T.A. & Aase I.L. (1997) The effect of Gyrodactylus salaris (Monogenea) on the epidermis of Atlantic salmon, Salmo salar, parr in the river Batnfjordselva, Norway. Journal of Parasitology 83, 1173-1174.
3. Bakke T.A., Jansen P.A. & Hansen L.P. (1990) Differences in the host resistance of Atlantic salmon, Salmo salar L., stocks to the monogenean Gyrodactylus salaris Malmberg, 1957. Journal of Fish Biology 37, 577-587.
4. Bakke T.A., Cable J. & Harris P.D. (2007) The biology of Gyrodactylid Monogeneans: the "Russian-Doll Killers". Advances in Parasitology 64, 161-378.
5. Beaumont M.A. & Nichols R.A. (1996) Evaluating loci for use in the genetic analysis of population structure. Proceedings of the Royal Society of London. Series B: Biological Sciences 263, 1619-1626.
6. Bourret V., Kent M.P., Primmer C.R., Vasemägi A., Karlsson S., Hindar K. et al. (2013) SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar). Molecular Ecology 22, 532-551.
7. Brooks R.J., Nielsen P.S. & Saltveit S.J. (1989) Effect of stream regulation on population parameters of Atlantic salmon (Salmo salar L.) in the river Lærdalselva, Western Norway. Regulated Rivers: Research & Management 4, 347-354.
8. Ciborowski K.L., Consuegra S., García de Leániz C., Wang J., Beaumont M.A. & Jordan W.C. (2007) Stocking may increase mitochondrial DNA diversity but fails to halt the decline of endangered Atlantic salmon populations. Conservation Genetics 8, 1355-1367.
9. Cornuet J.M. & Luikart G. (1996) Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144, 2001-2014.
10. Cowx I.G. & Gould R.A. (1989) Effects of stream regulation on Atlantic salmon, Salmo salar L., and brown trout, Salmo trutta L., in the Upper Severn catchment, U.K. Regulated Rivers: Research & Management 3, 235-245.
11. Crispo E., Moore J.-S., Lee-Yaw J.A., Gray S.M. & Haller B.C. (2011) Broken barriers: human-induced changes to gene flow and introgression in animals. BioEssays 33, 508-518.
12. Estoup A. & Cornuet J.M. (1999) Microsatellite evolution: inferences from population data. In: D.B. Goldstein & C. Schlötterer (eds) Microsatellites. Evolution and Applications. New York: Oxford University Press, pp. 49-65.
13. Evanno G., Regnaut S. & Goudet J. (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Molecular Ecology 14, 2611-2620.
14. Excoffier L., Laval G. & Schneider S. (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1, 47-50.
15. Fjellheim A. & Johnsen B.O. (2001) Experiences from stocking salmonid fry and fingerlings in Norway, with perspectives for future research and management strategies. Nordic Journal of Freshwater Research 75, 20-36.
16. Fraser D.J., Weir L.K., Bernatchez L., Hansen M.M. & Taylor E.B. (2011) Extent and scale of local adaptation in salmonid fishes: review and meta-analysis. Heredity 106, 404-420.
17. Garcia de Leaniz C., Fleming I.A., Einum S., Verspoor E., Jordan W.C., Consuegra S. et al. (2007) A critical review of adaptive genetic variation in Atlantic salmon: implications for conservation. Biological Reviews 82, 173-211.
18. Glover K.A., Quintela M., Wennevik V., Besnier F., Sørvik A.G.E. & Skaala Ø. (2012) Three decades of farmed escapees in the wild: a spatio-temporal analysis of Atlantic salmon population genetic structure throughout Norway. PLoS ONE 7, e43129.
19. Goudet J. (1995) FSTAT, version 1.2: a computer program to calculate F-statistics. Journal of Heredity 86, 485-486.
20. Hindar K., Tufto J., Sættem L.M. & Balstad T. (2004) Conservation of genetic variation in harvested salmon populations. ICES Journal of Marine Science: Journal du Conseil 61, 1389-1397.
21. Hutchings J.A. (1991) The threat of extinction to native populations experiencing spawning intrusions by cultured Atlantic salmon. Aquaculture 98, 119-132.
22. Jensen A.J., Bremset G., Finstad B., Hvidsten N.A., Jensås J.G., Johnsen B.O. et al. (2009) Fiskeribiologiske undersøkelser i Auravassdraget. Årsrapport 2008. NINA rapport No. 451. 63 pp.
23. Johnsen B.O. & Jensen A.J. (1992) Infection of Atlantic salmon, Salmo salar L., by Gyrodactylus salaris, Malmberg 1957, in the River Lakselva, Misvær in northern Norway. Journal of Fish Biology 40, 433-444.
24. Johnsen B.O., Jonsson N. & Møkkelgjerd P.I. (1999) Parasitten Gyrodactylus salaris på laks i norske vassdrag, statusrapport ved inngangen til år 2000. NINA Oppdragsmelding No. 617. 129 pp.
25. Johnsen B.O., Arnekleiv J.V., Asplin L., Barlaup B.T., Næsje T.F., Rosseland B.O. et al. (2011) Hydropower development - ecological effects. In: O. Aas, S. Einum, A. Klemetsen & J. Skurdal (eds) Atlantic Salmon Ecology. Oxford: Wiley-Blackwell, pp 351-385.
26. Jonsson B. & Jonsson N. (2011) Ecology of Atlantic Salmon and Brown Trout. Habitat as Template for Life Histories. New York: Springer, p 680.
27. King T.L., Kalinowski S.T., Schill W.B., Spidle A.P. & Lubinski B.A. (2001) Population structure of Atlantic salmon (Salmo salar L.): a range-wide perspective from microsatellite DNA variation. Molecular Ecology 10, 807-821.
28. King T.L., Eackles M.S. & Letcher B.H. (2005) Microsatellite DNA markers for the study of Atlantic salmon (Salmo salar) kinship, population structure, and mixed-fishery analyses. Molecular Ecology Notes 5, 130-132.
29. Lura H. & Sægrov H. (1991) Documentation of successful spawning of escaped farmed female Atlantic salmon, Salmo salar, in Norwegian rivers. Aquaculture 98, 151-159.
30. Lydersen E., Bakke T.A., Høgberget R., Håvardstun J., Hytterød S., Kristensen T. et al. (2004) Al-behandling mot Gyrodactylus salaris i Batnfjordselva. NIVA rapport No. 4873-2004. 15 pp.
31. Maruyama T. & Fuerst P.A. (1985) Population bottlenecks and nonequilibrium models in population genetics: 2. Number of alleles in a small population that was formed by a recent bottleneck. Genetics 111, 675-689.
32. McGinnity P., Prodöhl P., Ferguson A., Hynes R., Maoiléidigh N.Ó., Baker N. et al. (2003) Fitness reduction and potential extinction of wild populations of Atlantic salmon, Salmo salar, as a result of interactions with escaped farm salmon. Proceedings of the Royal Society of London. Series B: Biological Sciences 270, 2443-2450.
33. Mo T.A. (1992) Seasonal variations in the prevalence and infestation intensity of Gyrodactylus salaris Malmberg, 1957 (Monogenea: Gyrodactylidae) on Atlantic salmon parr, Salmo salar L., in the River Batnfjordselva, Norway. Journal of Fish Biology 41, 697-707.
34. Murchie K.J., Hair K.P.E., Pullen C.E., Redpath T.D., Stephens H.R. & Cooke S.J. (2008) Fish response to modified flow regimes in regulated rivers: research methods, effects and opportunities. River Research and Applications 24, 197-217.
35. Nielsen E.E., Hansen M.M. & Loeschcke V. (1999) Genetic variation in time and space: microsatellite analysis of extinct and extant populations of Atlantic salmon. Evolution 53, 261-268.
36. Primmer C.R., Veselov A.J., Zubchenko A., Poututkin A., Bakhmet I. & Koskinen M.T. (2006) Isolation by distance within a river system: genetic population structuring of Atlantic salmon, Salmo salar, in tributaries of the Varzuga River in northwest Russia. Molecular Ecology 15, 653-666.
37. Pritchard J.K., Stephens M. & Donnelly P. (2000) Inference of population structure using multilocus genotype data. Genetics 155, 945-959.
38. Raymond M. & Rousset F. (1995) GENEPOP (ver. 1.2): a population genetics software for exact test and ecumenicism. Heredity 86, 248-249.
39. Rice W.R. (1989) Analyzing tables of statistical tests. Evolution 43, 223-225.
40. Rousset F. (2008) GENEPOP'007: a complete re-implementation of the GENEPOP software for Windows and Linux. Molecular Ecology Resources 8, 103-106.
41. Saltveit S.J. (1990) Effect of decreased temperature on growth and smoltification of juvenile Atlantic salmon (Salmo salar) and brown trout (Salmo trutta) in a Norwegian regulated river. Regulated Rivers: Research & Management 5, 295-303.
42. Saltveit S.J. (1998) The effects of stocking Atlantic salmon, Salmo salar, in Norwegian rivers. In: I.G. Cowx (ed.) Stocking and Introduction of Fish. Oxford: Blackwell, pp 22-34.
43. Saltveit S.J. (2006) The effects of stocking Atlantic salmon, Salmo salar, in a Norwegian regulated river. Fisheries Management and Ecology 13, 197-205.
44. Sandøy S. & Langåker R.M. (2001) Atlantic salmon and acidification in Southern Norway: a disaster in the 20th century, but a hope for the future? Water, Air, and Soil Pollution 130, 1343-1348.
45. Slettan A., Olsaker I. & Lie Ø. (1995) Atlantic salmon, Salmo salar, microsatellites at the SsOSL25, SsOSL85, SsOSL311, SsOSL417 loci. Animal Genetics 26, 281-282.
46. Slettan A., Olsaker I. & Lie Ø. (1996) Polymorphic Atlantic salmon, Salmo salar L., microsatellites at the SsOSL438, SsOSL439 and SsOSL444 loci. Animal Genetics 27, 57-58.
47. Ståhl G. & Hindar K. (1988) Genetisk struktur hos norsk laks: Status og perpektiver. Rapport fra Fiskeforskningen No. 1-1988. 57 pp.
48. Taylor E.B. (1991) A review of local adaptation in Salmonidae, with particular reference to Pacific and Atlantic salmon. Aquaculture 98, 185-207.
49. Ugedal O., Næsje T.F., Thorstad E.B., Forseth T., Saksgård L.M. & Heggberget T.G. (2008) Twenty years of hydropower regulation in the River Alta: long-term changes in abundance of juvenile and adult Atlantic salmon. Hydrobiologia 609, 9-23.
50. Urdal K., Sægrov H., Hellen B. & Kålås S. (2004) Fiskeundersøkingar i Årøyelva 1997-2003. Rådgivende Biologer AS No. 637. 46 pp.
51. Vähä J.-P., Erkinaro J., Niemelä E. & Primmer C.R. (2007) Life-history and habitat features influence the within-river genetic structure of Atlantic salmon. Molecular Ecology 16, 2638-2654.
52. Vasemägi A., Nilsson J. & Primmer C.R. (2005a) Seventy-five EST-linked Atlantic salmon (Salmo salar L.) microsatellite markers and their cross-amplification in five salmonid species. Molecular Ecology Notes 5, 282-288.
53. Vasemägi A., Nilsson J. & Primmer C.R. (2005b) Expressed sequence tag-linked microsatellites as a source of gene-associated polymorphisms for detecting signatures of divergent selection in Atlantic salmon (Salmo salar L.). Molecular Biology and Evolution 22, 1067-1076.
54. Vitousek P.M., Mooney H.A., Lubchenco J. & Melillo J.M. (1997) Human domination of earth's ecosystems. Science 277, 494-499.
55. Waples R.S. & Do C.H.I. (2008) LDNE: a program for estimating effective population size from data on linkage disequilibrium. Molecular Ecology Resources 8, 753-756.