Three-dimensional structure of a Streptomyces sviceus GNAT acetyltransferase with similarity to the C-terminal domain of the human GH84 O-GlcNAcase

Acta Crystallographica Section D: Biological Crystallography

Volumn 70, Issue 1, 2014, Pages 186-195

  He, Yuan ^a,b   Roth, Christian ^b   Turkenburg, Johan P ^b   Davies, Gideon J ^b  

^a NORTHWEST UNIVERSITY   (China)

^b UNIVERSITY OF YORK   (United Kingdom)

Author keywords

acetyl CoA; acetyltransferases; GCN5; GNAT; O GlcNAc

Indexed keywords

ACETYL COENZYME A; ACYLTRANSFERASE; BETA N ACETYLHEXOSAMINIDASE; GNAT; HEXOSAMINIDASE C;

ACETYL-COA; ARTICLE; BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; ENZYMOLOGY; GCN5; HUMAN; METABOLISM; O-GLCNAC; PROTEIN BINDING; PROTEIN TERTIARY STRUCTURE; STREPTOMYCES; X RAY CRYSTALLOGRAPHY;

ACETYL-COA; ACETYLTRANSFERASES; GCN5; GNAT; O-GLCNAC;

ACETYL COENZYME A; ACETYLTRANSFERASES; BETA-N-ACETYLHEXOSAMINIDASES; BINDING SITES; CRYSTALLOGRAPHY, X-RAY; HUMANS; MODELS, MOLECULAR; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; STREPTOMYCES;

EID: 84892425944     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S1399004713029155     Document Type: Article

References (45)

1. Bonsor, D., Butz, S. F., Solomons, J., Grant, S., Fairlamb, I. J., Fogg, M. J. & Grogan, G. (2006). Org. Biomol. Chem. 4, 1252-1260.
2. Burk, D. L., Xiong, B., Breitbach, C. & Berghuis, A. M. (2005). Acta Cryst. D61, 1273-1279.
3. Butkinaree, C., Cheung, W. D., Park, S., Park, K., Barber, M. & Hart, G. W. (2008). J. Biol. Chem. 283, 23557-23566.
4. Cantarel, B. L., Coutinho, P. M., Rancurel, C., Bernard, T., Lombard, V. & Henrissat, B. (2009). Nucleic Acids Res. 37, D233-D238.
5. Chen, V. B., Arendall, W. B., Headd, J. J., Keedy, D. A., Immormino, R. M., Kapral, G. J., Murray, L. W., Richardson, J. S. & Richardson, D. C. (2010). Acta Cryst. D66, 12-21.
6. Cheng, K. C., Liao, J. N. & Lyu, P. C. (2012). Biochem. J. 446, 395-404.
7. Comtesse, N., Maldener, E. & Meese, E. (2001). Biochem. Biophys. Res. Commun. 283, 634-640.
8. Dennis, R. J., Taylor, E. J., Macauley, M. S., Stubbs, K. A., Turkenburg, J. P., Hart, S. J., Black, G. N., Vocadlo, D. J. & Davies, G. J. (2006). Nature Struct. Mol. Biol. 13, 365-371.
9. Dong, D. L. & Hart, G. W. (1994). J. Biol. Chem. 269, 19321-19330.
10. Dyda, F., Klein, D. C. & Hickman, A. B. (2000). Annu. Rev. Biophys. Biomol. Struct. 29, 81-103.
11. Emsley, P. & Cowtan, K. (2004). Acta Cryst. D60, 2126-2132.
12. Fogg, M. J. & Wilkinson, A. J. (2008). Biochem. Soc. Trans. 36, 771-775.
13. Gambetta, M. C., Oktaba, K. & Müller, J. (2009). Science, 325, 93-96.
14. Hart, G. W., Housley, M. P. & Slawson, C. (2007). Nature (London), 446, 1017-1022.
15. He, Y., Macauley, M. S., Stubbs, K. A., Vocadlo, D. J. & Davies, G. J. (2010). J. Am. Chem. Soc. 132, 1807-1809.
16. Hegde, S. S., Dam, T. K., Brewer, C. F. & Blanchard, J. S. (2002). Biochemistry, 41, 7519-7527.
17. Hickman, A. B., Klein, D. C. & Dyda, F. (1999). Mol. Cell, 3, 23-32.
18. Hu, P., Shimoji, S. & Hart, G. W. (2010). FEBS Lett. 584, 2526-2538.
19. Jackson, S. P. & Tjian, R. (1988). Cell, 55, 125-133.
20. Krissinel, E. & Henrick, K. (2004). Acta Cryst. D60, 2256-2268.
21. Laskowski, R. A., Watson, J. D. & Thornton, J. M. (2005). Nucleic Acids Res. 33, W89-W93.
22. Leslie, A. G. W. (1992). Jnt CCP4/ESF-EACBM Newsl. Protein Crystallogr. 26.
23. Liszczak, G., Goldberg, J. M., Foyn, H., Petersson, E. J., Arnesen, T. & Marmorstein, R. (2013). Nature Struct. Mol. Biol. 20, 1098-1105.
24. Macauley, M. S., Stubbs, K. A. & Vocadlo, D. J. (2005). J. Am. Chem. Soc. 127, 17202-17203.
25. Macauley, M. S., Whitworth, G. E., Debowski, A. W., Chin, D. & Vocadlo, D. J. (2005). J. Biol. Chem. 280, 25313-25322.
26. Murshudov, G. N., Skubák, P., Lebedev, A. A., Pannu, N. S., Steiner, R. A., Nicholls, R. A., Winn, M. D., Long, F. & Vagin, A. A. (2011). Acta Cryst. D67, 355-367.
27. Neuwald, A. F. & Landsman, D. (1997). Trends Biochem. Sci. 22, 154-155.
28. Perrakis, A., Sixma, T. K., Wilson, K. S. & Lamzin, V. S. (1997). Acta Cryst. D53, 448-455.
29. Rao, F. V., Dorfmueller, H. C., Villa, F., Allwood, M., Eggleston, I. M. & van Aalten, D. M. F. (2006). EMBO J. 25, 1569-1578.
30. Rao, F. V., Schüttelkopf, A. W., Dorfmueller, H. C., Ferenbach, A. T., Navratilova, I. & van Aalten, D. M. F. (2013). Open Biol. 3, 130021.
31. Sakabe, K. & Hart, G. W. (2010). J. Biol. Chem. 285, 34460-34468.
32. Sakabe, K.,Wang, Z. & Hart, G.W. (2010). Proc. Natl Acad. Sci. USA, 107, 19915-19920.
33. Scheibner, K. A., De Angelis, J., Burley, S. K. & Cole, P. A. (2002). J. Biol. Chem. 277, 18118-18126.
34. Schimpl, M., Schüttelkopf, A. W., Borodkin, V. S. & van Aalten, D. M. F. (2010). Biochem. J. 432, 1-7.
35. Schultz, J. & Pils, B. (2002). FEBS Lett. 529, 179-182.
36. Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.
37. Sinclair, D. A., Syrzycka, M., Macauley, M. S., Rastgardani, T., Komljenovic, I., Vocadlo, D. J., Brock, H. W. & Honda, B. M. (2009). Proc. Natl Acad. Sci. USA, 106, 13427-13432.
38. Toleman, C., Paterson, A. J., Whisenhunt, T. R. & Kudlow, J. E. (2004). J. Biol. Chem. 279, 53665-53673.
39. Torres, C. R. & Hart, G. W. (1984). J. Biol. Chem. 259, 3308-3317.
40. Vetting, M. W., Bareich, D. C., Yu, M. & Blanchard, J. S. (2008). Protein Sci. 17, 1781-1790.
41. Vetting, M. W., de Carvalho, L. P. S., Yu, M., Hegde, S. S., Magnet, S., Roderick, S. L. & Blanchard, J. S. (2005). Arch. Biochem. Biophys. 433, 212-226.
42. Wang, Z., Udeshi, N. D., Slawson, C., Compton, P. D., Sakabe, K., Cheung, W. D., Shabanowitz, J., Hunt, D. F. & Hart, G. W. (2010). Sci. Signal. 3, ra2.
43. Winn, M. D. et al. (2011). Acta Cryst. D67, 235-242.
44. Wolf, E., De Angelis, J., Khalil, E. M., Cole, P. A. & Burley, S. K. (2002). J. Mol. Biol. 317, 215-224.
45. Yuzwa, S. A.,Macauley,M. S., Heinonen, J. E., Shan, X., Dennis, R. J., He, Y., Whitworth, G. E., Stubbs, K. A., McEachern, E. J., Davies, G. J. & Vocadlo, D. J. (2008). Nature Chem. Biol. 4, 483-490.