-
1
-
-
0034598746
-
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
-
Alizadeh AA, Eisen MB, Davis RE, Ma C, Lossos IS, et al. (2000) Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 403: 503-511.
-
(2000)
Nature
, vol.403
, pp. 503-511
-
-
Alizadeh, A.A.1
Eisen, M.B.2
Davis, R.E.3
Ma, C.4
Lossos, I.S.5
-
2
-
-
0037142053
-
The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma
-
Rosenwald A, Wright G, Chan WC, Connors JM, Campo E, et al. (2002) The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma. N Engl J Med 346: 1937-1947.
-
(2002)
N Engl J Med
, vol.346
, pp. 1937-1947
-
-
Rosenwald, A.1
Wright, G.2
Chan, W.C.3
Connors, J.M.4
Campo, E.5
-
3
-
-
20144382754
-
Molecular profiling of diffuse large B-cell lymphoma identifies robust subtypes including one characterized by host inflammatory response
-
Monti S, Savage KJ, Kutok JL, Feuerhake F, Kurtin P, et al. (2005) Molecular profiling of diffuse large B-cell lymphoma identifies robust subtypes including one characterized by host inflammatory response. Blood 105: 1851-1861.
-
(2005)
Blood
, vol.105
, pp. 1851-1861
-
-
Monti, S.1
Savage, K.J.2
Kutok, J.L.3
Feuerhake, F.4
Kurtin, P.5
-
4
-
-
33744960411
-
A biologic definition of Burkitt's lymphoma from transcriptional and genomic profiling
-
Hummel M, Bentink S, Berger H, Klapper W, Wessendorf S, et al. (2006) A biologic definition of Burkitt's lymphoma from transcriptional and genomic profiling. N Engl J Med 354: 2419-2430.
-
(2006)
N Engl J Med
, vol.354
, pp. 2419-2430
-
-
Hummel, M.1
Bentink, S.2
Berger, H.3
Klapper, W.4
Wessendorf, S.5
-
5
-
-
33645279862
-
Molecular diagnosis of Burkitt's lymphoma
-
Dave SS, Fu K, Wright GW, Lam LT, Kluin P, et al. (2006) Molecular diagnosis of Burkitt's lymphoma. N Engl J Med 354: 2431-2442.
-
(2006)
N Engl J Med
, vol.354
, pp. 2431-2442
-
-
Dave, S.S.1
Fu, K.2
Wright, G.W.3
Lam, L.T.4
Kluin, P.5
-
6
-
-
51649129260
-
Pathway activation patterns in diffuse large B-cell lymphomas
-
Bentink S, Wessendorf S, Schwaenen C, Rosolowski M, Klapper W, et al. (2008) Pathway activation patterns in diffuse large B-cell lymphomas. Leukemia 22: 1746-1754.
-
(2008)
Leukemia
, vol.22
, pp. 1746-1754
-
-
Bentink, S.1
Wessendorf, S.2
Schwaenen, C.3
Rosolowski, M.4
Klapper, W.5
-
7
-
-
84870544677
-
Recurrent mutation of the ID3 gene in Burkitt lymphoma identified by integrated genome, exome and transcriptome sequencing
-
Richter J, Schlesner M, Hoffmann S, Kreuz M, Leich E, et al. (2012) Recurrent mutation of the ID3 gene in Burkitt lymphoma identified by integrated genome, exome and transcriptome sequencing. Nat Genet 44: 1316-1320.
-
(2012)
Nat Genet
, vol.44
, pp. 1316-1320
-
-
Richter, J.1
Schlesner, M.2
Hoffmann, S.3
Kreuz, M.4
Leich, E.5
-
8
-
-
84870538715
-
The genetic landscape of mutations in Burkitt lymphoma
-
Love C, Sun Z, Jima D, Li G, Zhang J, et al. (2012) The genetic landscape of mutations in Burkitt lymphoma. Nat Genet 44: 1321-1325.
-
(2012)
Nat Genet
, vol.44
, pp. 1321-1325
-
-
Love, C.1
Sun, Z.2
Jima, D.3
Li, G.4
Zhang, J.5
-
9
-
-
84867051939
-
Burkitt lymphoma pathogenesis and therapeutic targets from structural and functional genomics
-
Schmitz R, Young RM, Ceribelli M, Jhavar S, Xiao W, et al. (2012) Burkitt lymphoma pathogenesis and therapeutic targets from structural and functional genomics. Nature 490: 116-120.
-
(2012)
Nature
, vol.490
, pp. 116-120
-
-
Schmitz, R.1
Young, R.M.2
Ceribelli, M.3
Jhavar, S.4
Xiao, W.5
-
10
-
-
80052029516
-
Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma
-
Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, et al. (2011) Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature 476: 298-303.
-
(2011)
Nature
, vol.476
, pp. 298-303
-
-
Morin, R.D.1
Mendez-Lago, M.2
Mungall, A.J.3
Goya, R.4
Mungall, K.L.5
-
11
-
-
80052269038
-
Analysis of the coding genome of diffuse large B-cell lymphoma
-
Pasqualucci L, Trifonov V, Fabbri G, Ma J, Rossi D, et al. (2011) Analysis of the coding genome of diffuse large B-cell lymphoma. Nat Genet 43: 830-837.
-
(2011)
Nat Genet
, vol.43
, pp. 830-837
-
-
Pasqualucci, L.1
Trifonov, V.2
Fabbri, G.3
Ma, J.4
Rossi, D.5
-
12
-
-
84857942952
-
Discovery and prioritization of somatic mutations in diffuse large B-cell lymphoma (DLBCL) by whole-exome sequencing
-
Lohr JG, Stojanov P, Lawrence MS, Auclair D, Chapuy B, et al. (2012) Discovery and prioritization of somatic mutations in diffuse large B-cell lymphoma (DLBCL) by whole-exome sequencing. Proc Natl Acad Sci U S A 109: 3879-3884.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 3879-3884
-
-
Lohr, J.G.1
Stojanov, P.2
Lawrence, M.S.3
Auclair, D.4
Chapuy, B.5
-
13
-
-
51649111684
-
Molecular subtypes of diffuse large B-cell lymphoma arise by distinct genetic pathways
-
Lenz G, Wright GW, Emre NC, Kohlhammer H, Dave SS, et al. (2008) Molecular subtypes of diffuse large B-cell lymphoma arise by distinct genetic pathways. Proc Natl Acad Sci U S A 105: 13520-13525.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 13520-13525
-
-
Lenz, G.1
Wright, G.W.2
Emre, N.C.3
Kohlhammer, H.4
Dave, S.S.5
-
14
-
-
0034614637
-
The hallmarks of cancer
-
Hanahan D, Weinberg RA (2000) The hallmarks of cancer. Cell 100: 57-70.
-
(2000)
Cell
, vol.100
, pp. 57-70
-
-
Hanahan, D.1
Weinberg, R.A.2
-
15
-
-
84857592849
-
Patient age at diagnosis is associated with the molecular characteristics of diffuse large B-cell lymphoma
-
Klapper W, Kreuz M, Kohler CW, Burkhardt B, Szczepanowski M, et al. (2012) Patient age at diagnosis is associated with the molecular characteristics of diffuse large B-cell lymphoma. Blood 119: 1882-1887.
-
(2012)
Blood
, vol.119
, pp. 1882-1887
-
-
Klapper, W.1
Kreuz, M.2
Kohler, C.W.3
Burkhardt, B.4
Szczepanowski, M.5
-
16
-
-
79958724665
-
RNA sequencing reveals two major classes of gene expression levels in metazoan cells
-
Hebenstreit D, Fang M, Gu M, Charoensawan V, van Oudenaarden A, et al. (2011) RNA sequencing reveals two major classes of gene expression levels in metazoan cells. Mol Syst Biol 7: 497.
-
(2011)
Mol Syst Biol
, vol.7
, pp. 497
-
-
Hebenstreit, D.1
Fang, M.2
Gu, M.3
Charoensawan, V.4
Van Oudenaarden, A.5
-
17
-
-
79952430906
-
Inactivating mutations of acetyltransferase genes in B-cell lymphoma
-
Pasqualucci L, Dominguez-Sola D, Chiarenza A, Fabbri G, Grunn A, et al. (2011) Inactivating mutations of acetyltransferase genes in B-cell lymphoma. Nature 471: 189-195.
-
(2011)
Nature
, vol.471
, pp. 189-195
-
-
Pasqualucci, L.1
Dominguez-Sola, D.2
Chiarenza, A.3
Fabbri, G.4
Grunn, A.5
-
18
-
-
75749124332
-
Somatic mutations altering EZH2 (Tyr641) in follicular and diffuse large B-cell lymphomas of germinal-center origin
-
Morin RD, Johnson NA, Severson TM, Mungall AJ, An J, et al. (2010) Somatic mutations altering EZH2 (Tyr641) in follicular and diffuse large B-cell lymphomas of germinal-center origin. Nat Genet 42: 181-185.
-
(2010)
Nat Genet
, vol.42
, pp. 181-185
-
-
Morin, R.D.1
Johnson, N.A.2
Severson, T.M.3
Mungall, A.J.4
An, J.5
-
19
-
-
77956887176
-
The biplot graphical display of matrices with applications to principal compontent analysis
-
Gabriel KR (1971) The biplot graphical display of matrices with applications to principal compontent analysis. Biometrika 58: 453-467.
-
(1971)
Biometrika
, vol.58
, pp. 453-467
-
-
Gabriel, K.R.1
-
20
-
-
57149089307
-
Stromal gene signatures in large-B-cell lymphomas
-
Lenz G, Wright G, Dave SS, Xiao W, Powell J, et al. (2008) Stromal gene signatures in large-B-cell lymphomas. N Engl J Med 359: 2313-2323.
-
(2008)
N Engl J Med
, vol.359
, pp. 2313-2323
-
-
Lenz, G.1
Wright, G.2
Dave, S.S.3
Xiao, W.4
Powell, J.5
-
21
-
-
8644252736
-
Prediction of survival in follicular lymphoma based on molecular features of tumor-infiltrating immune cells
-
Dave SS, Wright G, Tan B, Rosenwald A, Gascoyne RD, et al. (2004) Prediction of survival in follicular lymphoma based on molecular features of tumor-infiltrating immune cells. N Engl J Med 351: 2159-2169.
-
(2004)
N Engl J Med
, vol.351
, pp. 2159-2169
-
-
Dave, S.S.1
Wright, G.2
Tan, B.3
Rosenwald, A.4
Gascoyne, R.D.5
-
22
-
-
33749535603
-
Co-evolution of transcriptional and post-translational cell-cycle regulation
-
Jensen LJ, Jensen TS, de Lichtenberg U, Brunak S, Bork P (2006) Co-evolution of transcriptional and post-translational cell-cycle regulation. Nature 443: 594-597.
-
(2006)
Nature
, vol.443
, pp. 594-597
-
-
Jensen, L.J.1
Jensen, T.S.2
De Lichtenberg, U.3
Brunak, S.4
Bork, P.5
-
23
-
-
0035985177
-
Identification of genes periodically expressed in the human cell cycle and their expression in tumors
-
Whitfield ML, Sherlock G, Saldanha AJ, Murray JI, Ball CA, et al. (2002) Identification of genes periodically expressed in the human cell cycle and their expression in tumors. Mol Biol Cell 13: 1977-2000.
-
(2002)
Mol Biol Cell
, vol.13
, pp. 1977-2000
-
-
Whitfield, M.L.1
Sherlock, G.2
Saldanha, A.J.3
Murray, J.I.4
Ball, C.A.5
-
24
-
-
71149084382
-
Revealing global regulatory perturbations across human cancers
-
Goodarzi H, Elemento O, Tavazoie S (2009) Revealing global regulatory perturbations across human cancers. Mol Cell 36: 900-911.
-
(2009)
Mol Cell
, vol.36
, pp. 900-911
-
-
Goodarzi, H.1
Elemento, O.2
Tavazoie, S.3
-
25
-
-
63449125034
-
High-dimensional data analysis: Selection of variables, data compression and graphics-application to gene expression
-
Läuter J, Horn F, Rosolowski M, Glimm E (2009) High-dimensional data analysis: selection of variables, data compression and graphics-application to gene expression. Biom J 51: 235-251.
-
(2009)
Biom J
, vol.51
, pp. 235-251
-
-
Läuter, J.1
Horn, F.2
Rosolowski, M.3
Glimm, E.4
-
27
-
-
84865114403
-
Synergy between PI3K Signaling and MYC in Burkitt Lymphomagenesis
-
Sander S, Calado DP, Srinivasan L, Kochert K, Zhang B, et al. (2012) Synergy between PI3K Signaling and MYC in Burkitt Lymphomagenesis. Cancer Cell 22: 167-179.
-
(2012)
Cancer Cell
, vol.22
, pp. 167-179
-
-
Sander, S.1
Calado, D.P.2
Srinivasan, L.3
Kochert, K.4
Zhang, B.5
-
28
-
-
84867595989
-
Metabolic signatures uncover distinct targets in molecular subsets of diffuse large B cell lymphoma
-
Caro P, Kishan AU, Norberg E, Stanley IA, Chapuy B, et al. (2012) Metabolic signatures uncover distinct targets in molecular subsets of diffuse large B cell lymphoma. Cancer Cell 22: 547-560.
-
(2012)
Cancer Cell
, vol.22
, pp. 547-560
-
-
Caro, P.1
Kishan, A.U.2
Norberg, E.3
Stanley, I.A.4
Chapuy, B.5
-
29
-
-
84867021989
-
Transcriptional amplification in tumor cells with elevated c-Myc
-
Lin CY, Loven J, Rahl PB, Paranal RM, Burge CB, et al. (2012) Transcriptional amplification in tumor cells with elevated c-Myc. Cell 151: 56-67.
-
(2012)
Cell
, vol.151
, pp. 56-67
-
-
Lin, C.Y.1
Loven, J.2
Rahl, P.B.3
Paranal, R.M.4
Burge, C.B.5
-
30
-
-
84867010006
-
c-Myc is a universal amplifier of expressed genes in lymphocytes and embryonic stem cells
-
Nie Z, Hu G, Wei G, Cui K, Yamane A, et al. (2012) c-Myc is a universal amplifier of expressed genes in lymphocytes and embryonic stem cells. Cell 151: 68-79.
-
(2012)
Cell
, vol.151
, pp. 68-79
-
-
Nie, Z.1
Hu, G.2
Wei, G.3
Cui, K.4
Yamane, A.5
-
31
-
-
51649089695
-
Molecular profiling of pediatric mature B-cell lymphoma treated in population-based prospective clinical trials
-
Klapper W, Szczepanowski M, Burkhardt B, Berger H, Rosolowski M, et al. (2008) Molecular profiling of pediatric mature B-cell lymphoma treated in population-based prospective clinical trials. Blood 112: 1374-1381.
-
(2008)
Blood
, vol.112
, pp. 1374-1381
-
-
Klapper, W.1
Szczepanowski, M.2
Burkhardt, B.3
Berger, H.4
Rosolowski, M.5
-
32
-
-
79960148387
-
Translocations activating IRF4 identify a subtype of germinal center-derived Bcell lymphoma affecting predominantly children and young adults
-
Salaverria I, Philipp C, Oschlies I, Kohler CW, Kreuz M, et al. (2011) Translocations activating IRF4 identify a subtype of germinal center-derived Bcell lymphoma affecting predominantly children and young adults. Blood 118: 139-147.
-
(2011)
Blood
, vol.118
, pp. 139-147
-
-
Salaverria, I.1
Philipp, C.2
Oschlies, I.3
Kohler, C.W.4
Kreuz, M.5
-
33
-
-
35349007552
-
Development and implementation of an analysis tool for array-based comparative genomic hybridization
-
Kreuz M, Rosolowski M, Berger H, Schwaenen C, Wessendorf S, et al. (2007) Development and implementation of an analysis tool for array-based comparative genomic hybridization. Methods Inf Med 46: 608-613.
-
(2007)
Methods Inf Med
, vol.46
, pp. 608-613
-
-
Kreuz, M.1
Rosolowski, M.2
Berger, H.3
Schwaenen, C.4
Wessendorf, S.5
-
35
-
-
11244346557
-
Variance stabilization applied to microarray data calibration and to the quantification of differential expression
-
Huber W, von Heydebreck A, Sultmann H, Poustka A, Vingron M (2002) Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics 18 Suppl 1: S96-104.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Huber, W.1
Von Heydebreck, A.2
Sultmann, H.3
Poustka, A.4
Vingron, M.5
-
36
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, et al. (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4: 249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
-
37
-
-
40149090871
-
Microarray based diagnosis profits from better documentation of gene expression signatures
-
Kostka D, Spang R (2008) Microarray based diagnosis profits from better documentation of gene expression signatures. PLoS Comput Biol 4: e22.
-
(2008)
PLoS Comput Biol
, vol.4
-
-
Kostka, D.1
Spang, R.2
-
39
-
-
0023453329
-
Silhouettes: A graphical aid to the interpretation and validation of cluster analysis
-
Rousseeuw PJ (1987) Silhouettes: A graphical aid to the interpretation and validation of cluster analysis. J Comput Appl Math 20: 53-65.
-
(1987)
J Comput Appl Math
, vol.20
, pp. 53-65
-
-
Rousseeuw, P.J.1
-
40
-
-
79951480123
-
-
R Development Core Team Vienna, Austria: R Foundation for Statistical Computing
-
R Development Core Team (2010) R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing.
-
(2010)
R: A Language and Environment for Statistical Computing
-
-
-
41
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, et al. (2004) Bioconductor: Open software development for computational biology and bioinformatics. Genome Biology 5: R80.
-
(2004)
Genome Biology
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
|