-
1
-
-
79952108656
-
Epigenetic regulation of V(D)J recombination
-
doi:10.1042/bse0480221
-
Johnson K, Chaumeil J, Skok JA. Epigenetic regulation of V(D)J recombination. Essays Biochem (2010) 48:221-43. doi:10.1042/bse0480221.
-
(2010)
Essays Biochem
, vol.48
, pp. 221-243
-
-
Johnson, K.1
Chaumeil, J.2
Skok, J.A.3
-
2
-
-
77955860807
-
Chromosome dynamics and the regulation of V(D)J recombination
-
doi:10.1111/j.1600-065X.2010.00931.x
-
Hewitt SL, Chaumeil J, Skok JA. Chromosome dynamics and the regulation of V(D)J recombination. Immunol Rev (2010) 237:43-54. doi:10.1111/j.1600-065X.2010.00931.x.
-
(2010)
Immunol Rev
, vol.237
, pp. 43-54
-
-
Hewitt, S.L.1
Chaumeil, J.2
Skok, J.A.3
-
3
-
-
37249041657
-
RAG2 PHD finger couples histone H3 lysine 4 trimethylation with V(D)J recombination
-
doi:10.1038/nature06431
-
Matthews AG, Kuo AJ, Ramon-Maiques S, Han S, Champagne KS, Ivanov D, et al. RAG2 PHD finger couples histone H3 lysine 4 trimethylation with V(D)J recombination. Nature (2007) 450:1106-10. doi:10.1038/nature06431.
-
(2007)
Nature
, vol.450
, pp. 1106-1110
-
-
Matthews, A.G.1
Kuo, A.J.2
Ramon-Maiques, S.3
Han, S.4
Champagne, K.S.5
Ivanov, D.6
-
4
-
-
35349024178
-
A plant homeodomain in RAG-2 that binds hypermethylated lysine 4 of histone H3 is necessary for efficient antigen-receptor-gene rearrangement
-
doi:10.1016/j.immuni.2007.09.005
-
Liu Y, Subrahmanyam R, Chakraborty T, Sen R, Desiderio S. A plant homeodomain in RAG-2 that binds hypermethylated lysine 4 of histone H3 is necessary for efficient antigen-receptor-gene rearrangement. Immunity (2007) 27:561-71. doi:10.1016/j.immuni.2007.09.005.
-
(2007)
Immunity
, vol.27
, pp. 561-571
-
-
Liu, Y.1
Subrahmanyam, R.2
Chakraborty, T.3
Sen, R.4
Desiderio, S.5
-
5
-
-
77951893700
-
The in vivo pattern of binding of RAG1 and RAG2 to antigen receptor loci
-
doi:10.1016/j.cell.2010.03.010
-
Ji Y, Resch W, Corbett E, Yamane A, Casellas R, Schatz DG. The in vivo pattern of binding of RAG1 and RAG2 to antigen receptor loci. Cell (2010) 141:419-31. doi:10.1016/j.cell.2010.03.010.
-
(2010)
Cell
, vol.141
, pp. 419-431
-
-
Ji, Y.1
Resch, W.2
Corbett, E.3
Yamane, A.4
Casellas, R.5
Schatz, D.G.6
-
6
-
-
84869502375
-
Global changes in the nuclear positioning of genes and intra-and interdomain genomic interactions that orchestrate B cell fate
-
doi:10.1038/ni.2432
-
Lin YC, Benner C, Mansson R, Heinz S, Miyazaki K, Miyazaki M, et al. Global changes in the nuclear positioning of genes and intra-and interdomain genomic interactions that orchestrate B cell fate. Nat Immunol (2012) 13:1196-204. doi:10.1038/ni.2432.
-
(2012)
Nat Immunol
, vol.13
, pp. 1196-1204
-
-
Lin, Y.C.1
Benner, C.2
Mansson, R.3
Heinz, S.4
Miyazaki, K.5
Miyazaki, M.6
-
7
-
-
73349090560
-
Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells
-
doi:10.1038/ng.496
-
Schoenfelder S, Sexton T, Chakalova L, Cope NF, Horton A, Andrews S, et al. Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells. Nat Genet (2010) 42:53-61. doi:10.1038/ng.496.
-
(2010)
Nat Genet
, vol.42
, pp. 53-61
-
-
Schoenfelder, S.1
Sexton, T.2
Chakalova, L.3
Cope, N.F.4
Horton, A.5
Andrews, S.6
-
8
-
-
84857467274
-
Progressive polycomb assembly on H3K27me3 compartments generates polycomb bodies with developmentally regulated motion
-
doi:10.1371/journal.pgen.1002465
-
Cheutin T, Cavalli G. Progressive polycomb assembly on H3K27me3 compartments generates polycomb bodies with developmentally regulated motion. PLoS Genet (2012) 8:e1002465. doi:10.1371/journal.pgen.1002465.
-
(2012)
PLoS Genet
, vol.8
-
-
Cheutin, T.1
Cavalli, G.2
-
9
-
-
77954090889
-
It takes two: communication between homologous alleles preserves genomic stability during V(D)J recombination
-
doi:10.4161/nucl.1.1.10595
-
Brandt VL, Hewitt SL, Skok JA. It takes two: communication between homologous alleles preserves genomic stability during V(D)J recombination. Nucleus (2010) 1:23-9. doi:10.4161/nucl.1.1.10595.
-
(2010)
Nucleus
, vol.1
, pp. 23-29
-
-
Brandt, V.L.1
Hewitt, S.L.2
Skok, J.A.3
-
10
-
-
67349228524
-
RAG-1 and ATM coordinate monoallelic recombination and nuclear positioning of immunoglobulin loci
-
doi:10.1038/ni.1735
-
Hewitt SL, Yin B, Ji Y, Chaumeil J, Marszalek K, Tenthorey J, et al. RAG-1 and ATM coordinate monoallelic recombination and nuclear positioning of immunoglobulin loci. Nat Immunol (2009) 10:655-64. doi:10.1038/ni.1735.
-
(2009)
Nat Immunol
, vol.10
, pp. 655-664
-
-
Hewitt, S.L.1
Yin, B.2
Ji, Y.3
Chaumeil, J.4
Marszalek, K.5
Tenthorey, J.6
-
11
-
-
84874283254
-
Higher-order looping and nuclear organization of Tcra facilitate targeted RAG cleavage and regulated rearrangement in recombination centers
-
doi:10.1016/j.celrep.2013.01.024
-
Chaumeil J, Micsinai M, Ntziachristos P, Deriano L, Wang JM, Ji Y, et al. Higher-order looping and nuclear organization of Tcra facilitate targeted RAG cleavage and regulated rearrangement in recombination centers. Cell Rep (2013) 3(2):359-70. doi:10.1016/j.celrep.2013.01.024.
-
(2013)
Cell Rep
, vol.3
, Issue.2
, pp. 359-370
-
-
Chaumeil, J.1
Micsinai, M.2
Ntziachristos, P.3
Deriano, L.4
Wang, J.M.5
Ji, Y.6
-
12
-
-
0035316574
-
Chromosome territories, nuclear architecture and gene regulation in mammalian cells
-
doi:10.1038/35066075
-
Cremer T, Cremer C. Chromosome territories, nuclear architecture and gene regulation in mammalian cells. Nat Rev Genet (2001) 2:292-301. doi:10.1038/35066075.
-
(2001)
Nat Rev Genet
, vol.2
, pp. 292-301
-
-
Cremer, T.1
Cremer, C.2
-
13
-
-
77955393744
-
Stable morphology, but dynamic internal reorganisation, of interphase human chromosomes in living cells
-
doi:10.1371/journal.pone.0011560
-
Muller I, Boyle S, Singer RH, Bickmore WA, Chubb JR. Stable morphology, but dynamic internal reorganisation, of interphase human chromosomes in living cells. PLoS One (2010) 5:e11560. doi:10.1371/journal.pone.0011560.
-
(2010)
PLoS One
, vol.5
-
-
Muller, I.1
Boyle, S.2
Singer, R.H.3
Bickmore, W.A.4
Chubb, J.R.5
-
14
-
-
2442695407
-
Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription
-
doi:10.1101/gad.292104
-
Chambeyron S, Bickmore WA. Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription. Genes Dev (2004) 18:1119-30. doi:10.1101/gad.292104.
-
(2004)
Genes Dev
, vol.18
, pp. 1119-1130
-
-
Chambeyron, S.1
Bickmore, W.A.2
-
15
-
-
84862917808
-
Genome architectures revealed by tethered chromosome conformation capture and population-based modeling
-
doi:10.1038/nbt.2057
-
Kalhor R, Tjong H, Jayathilaka N, Alber F, Chen L. Genome architectures revealed by tethered chromosome conformation capture and population-based modeling. Nat Biotechnol (2012) 30:90-8. doi:10.1038/nbt.2057.
-
(2012)
Nat Biotechnol
, vol.30
, pp. 90-98
-
-
Kalhor, R.1
Tjong, H.2
Jayathilaka, N.3
Alber, F.4
Chen, L.5
-
16
-
-
82955163171
-
Fluorescence in situ hybridization with high-complexity repeat-free oligonucleotide probes generated by massively parallel synthesis
-
doi:10.1007/s10577-011-9245-0
-
Boyle S, Rodesch MJ, Halvensleben HA, Jeddeloh JA, Bickmore WA. Fluorescence in situ hybridization with high-complexity repeat-free oligonucleotide probes generated by massively parallel synthesis. Chromosome Res (2011) 19:901-9. doi:10.1007/s10577-011-9245-0.
-
(2011)
Chromosome Res
, vol.19
, pp. 901-909
-
-
Boyle, S.1
Rodesch, M.J.2
Halvensleben, H.A.3
Jeddeloh, J.A.4
Bickmore, W.A.5
-
17
-
-
0034065032
-
Large-scale chromatin organization of the major histocompatibility complex and other regions of human chromosome 6 and its response to interferon in interphase nuclei
-
Volpi EV, Chevret E, Jones T, Vatcheva R, Williamson J, Beck S, et al. Large-scale chromatin organization of the major histocompatibility complex and other regions of human chromosome 6 and its response to interferon in interphase nuclei. J Cell Sci (2000) 113(Pt 9):1565-76.
-
(2000)
J Cell Sci
, vol.113
, Issue.PART 9
, pp. 1565-1576
-
-
Volpi, E.V.1
Chevret, E.2
Jones, T.3
Vatcheva, R.4
Williamson, J.5
Beck, S.6
-
18
-
-
79952255995
-
The RAG2 C terminus suppresses genomic instability and lymphomagenesis
-
doi:10.1038/nature09755
-
Deriano L, Chaumeil J, Coussens M, Multani A, Chou Y, Alekseyenko AV, et al. The RAG2 C terminus suppresses genomic instability and lymphomagenesis. Nature (2011) 471:119-23. doi:10.1038/nature09755.
-
(2011)
Nature
, vol.471
, pp. 119-123
-
-
Deriano, L.1
Chaumeil, J.2
Coussens, M.3
Multani, A.4
Chou, Y.5
Alekseyenko, A.V.6
-
19
-
-
77954410160
-
ATM-deficient thymic lymphoma is associated with aberrant Tcrd rearrangement and gene amplification
-
doi:10.1084/jem.20100285
-
Zha S, Bassing CH, Sanda T, Brush JW, Patel H, Goff PH, et al. ATM-deficient thymic lymphoma is associated with aberrant Tcrd rearrangement and gene amplification. J Exp Med (2010) 207:1369-80. doi:10.1084/jem.20100285.
-
(2010)
J Exp Med
, vol.207
, pp. 1369-1380
-
-
Zha, S.1
Bassing, C.H.2
Sanda, T.3
Brush, J.W.4
Patel, H.5
Goff, P.H.6
-
20
-
-
68449103871
-
Chimeric IgH-TCRalpha/delta translocations in T lymphocytes mediated by RAG
-
doi:10.4161/cc.8.15.9085
-
Callen E, Bunting S, Huang CY, Difilippantonio MJ, Wong N, Khor B, et al. Chimeric IgH-TCRalpha/delta translocations in T lymphocytes mediated by RAG. Cell Cycle (2009) 8:2408-12. doi:10.4161/cc.8.15.9085.
-
(2009)
Cell Cycle
, vol.8
, pp. 2408-2412
-
-
Callen, E.1
Bunting, S.2
Huang, C.Y.3
Difilippantonio, M.J.4
Wong, N.5
Khor, B.6
-
21
-
-
0034284341
-
Abnormal rearrangement within the alpha/delta T-cell receptor locus in lymphomas from Atm-deficient mice
-
Liyanage M, Weaver Z, Barlow C, Coleman A, Pankratz DG, Anderson S, et al. Abnormal rearrangement within the alpha/delta T-cell receptor locus in lymphomas from Atm-deficient mice. Blood (2000) 96:1940-6.
-
(2000)
Blood
, vol.96
, pp. 1940-1946
-
-
Liyanage, M.1
Weaver, Z.2
Barlow, C.3
Coleman, A.4
Pankratz, D.G.5
Anderson, S.6
-
22
-
-
84881431035
-
The RAG2 C-terminus and ATM protect genome integrity by controlling antigen receptor gene cleavage
-
doi:10.1038/ncomms3231
-
Chaumeil J, Micsinai M, Ntziachristos P, Roth DB, Aifantis I, Kluger Y, et al. The RAG2 C-terminus and ATM protect genome integrity by controlling antigen receptor gene cleavage. Nat Commun (2013) 4:2231. doi:10.1038/ncomms3231.
-
(2013)
Nat Commun
, vol.4
, pp. 2231
-
-
Chaumeil, J.1
Micsinai, M.2
Ntziachristos, P.3
Roth, D.B.4
Aifantis, I.5
Kluger, Y.6
-
23
-
-
84859441129
-
Illegitimate V(D)J recombination involving nonantigen receptor loci in lymphoid malignancy
-
doi:10.1002/gcc.21942
-
Onozawa M, Aplan PD. Illegitimate V(D)J recombination involving nonantigen receptor loci in lymphoid malignancy. Genes Chromosomes Cancer (2012) 51:525-35. doi:10.1002/gcc.21942.
-
(2012)
Genes Chromosomes Cancer
, vol.51
, pp. 525-535
-
-
Onozawa, M.1
Aplan, P.D.2
-
24
-
-
84878642483
-
Transcription-coupled eviction of histones H2A/H2B governs V(D)J recombination
-
doi:10.1038/emboj.2013.42
-
Bevington S, Boyes J. Transcription-coupled eviction of histones H2A/H2B governs V(D)J recombination. EMBO J (2013) 32:1381-92. doi:10.1038/emboj.2013.42.
-
(2013)
EMBO J
, vol.32
, pp. 1381-1392
-
-
Bevington, S.1
Boyes, J.2
-
25
-
-
0038506030
-
IRF-4,8 orchestrate the pre-B-to-B transition in lymphocyte development
-
doi:10.1101/gad.1104803
-
Lu R, Medina KL, Lancki DW, Singh H. IRF-4,8 orchestrate the pre-B-to-B transition in lymphocyte development. Genes Dev (2003) 17:1703-8. doi:10.1101/gad.1104803.
-
(2003)
Genes Dev
, vol.17
, pp. 1703-1708
-
-
Lu, R.1
Medina, K.L.2
Lancki, D.W.3
Singh, H.4
-
26
-
-
40249112989
-
Regulation of immunoglobulin light-chain recombination by the transcription factor IRF-4 and the attenuation of interleukin-7 signaling
-
doi:10.1016/j.immuni.2007.12.019
-
Johnson K, Hashimshony T, Sawai CM, Pongubala JM, Skok JA, Aifantis I, et al. Regulation of immunoglobulin light-chain recombination by the transcription factor IRF-4 and the attenuation of interleukin-7 signaling. Immunity (2008) 28(3):335-45. doi:10.1016/j.immuni.2007.12.019.
-
(2008)
Immunity
, vol.28
, Issue.3
, pp. 335-345
-
-
Johnson, K.1
Hashimshony, T.2
Sawai, C.M.3
Pongubala, J.M.4
Skok, J.A.5
Aifantis, I.6
-
27
-
-
0035954427
-
Kinetics of core histones in living human cells: little exchange of H3 and H4 and some rapid exchange of H2B
-
doi:10.1083/jcb.153.7.1341
-
Kimura H, Cook PR. Kinetics of core histones in living human cells: little exchange of H3 and H4 and some rapid exchange of H2B. J Cell Biol (2001) 153:1341-53. doi:10.1083/jcb.153.7.1341.
-
(2001)
J Cell Biol
, vol.153
, pp. 1341-1353
-
-
Kimura, H.1
Cook, P.R.2
-
28
-
-
0036203807
-
Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription
-
doi:10.1016/S1097-2765(02)00472-0
-
Kireeva ML, Walter W, Tchernajenko V, Bondarenko V, Kashlev M, Studitsky VM. Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription. Mol Cell (2002) 9:541-52. doi:10.1016/S1097-2765(02)00472-0.
-
(2002)
Mol Cell
, vol.9
, pp. 541-552
-
-
Kireeva, M.L.1
Walter, W.2
Tchernajenko, V.3
Bondarenko, V.4
Kashlev, M.5
Studitsky, V.M.6
-
29
-
-
34247328546
-
Histone dynamics during transcription: exchange of H2A/H2B dimers and H3/H4 tetramers during pol II elongation
-
doi:10.1007/400_009
-
Thiriet C, Hayes JJ. Histone dynamics during transcription: exchange of H2A/H2B dimers and H3/H4 tetramers during pol II elongation. Results Probl Cell Differ (2006) 41:77-90. doi:10.1007/400_009.
-
(2006)
Results Probl Cell Differ
, vol.41
, pp. 77-90
-
-
Thiriet, C.1
Hayes, J.J.2
|