Characterizing slow chemical exchange in nucleic acids by carbon CEST and low spin-lock field R 1ρ NMR spectroscopy

Journal of the American Chemical Society

Volumn 136, Issue 1, 2014, Pages 20-23

  Zhao, Bo ^a,b   Hansen, Alexandar L ^c   Zhang, Qi ^a  

^a UNIVERSITY OF NORTH CAROLINA SCHOOL OF MEDICINE   (United States)

^b University of North Carolina at Chapel Hill   (United States)

^c UNIVERSITY OF TORONTO   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL EXCHANGE; CHEMICAL EXCHANGE SATURATION TRANSFER; CONFORMATIONAL STATE; EXCHANGE DYNAMICS; MOLECULAR BASIS; NMR EXPERIMENTS; QUANTITATIVE CHARACTERIZATION; RELAXATION DISPERSION;

CARBON; LOCKS (FASTENERS); NUCLEIC ACIDS;

NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY;

CARBON; NUCLEIC ACID; SUGAR;

ARTICLE; MOLECULAR DYNAMICS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; RIBOSWITCH;

BASE SEQUENCE; CARBON; FLUORIDES; MAGNETIC RESONANCE SPECTROSCOPY; NUCLEIC ACIDS; RIBOSWITCH;

EID: 84892166980     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja409835y     Document Type: Article

References (38)

1. Dethoff, E. A.; Chugh, J.; Mustoe, A. M.; Al-Hashimi, H. M. Nature 2012, 482, 322
2. Rinnenthal, J.; Buck, J.; Ferner, J.; Wacker, A.; Furtig, B.; Schwalbe, H. Acc. Chem. Res. 2011, 44, 1292
3. Bothe, J. R.; Nikolova, E. N.; Eichhorn, C. D.; Chugh, J.; Hansen, A. L.; Al-Hashimi, H. M. Nat. Methods 2011, 8, 919
4. Russu, I. M. Methods Enzymol. 2004, 379, 152
5. Wenter, P.; Bodenhausen, G.; Dittmer, J.; Pitsch, S. J. Am. Chem. Soc. 2006, 128, 7579
6. Kloiber, K.; Spitzer, R.; Tollinger, M.; Konrat, R.; Kreutz, C. Nucleic Acids Res. 2011, 39, 4340
7. Wunderlich, C. H.; Spitzer, R.; Santner, T.; Fauster, K.; Tollinger, M.; Kreutz, C. J. Am. Chem. Soc. 2012, 134, 7558
8. Reining, A.; Nozinovic, S.; Schlepckow, K.; Buhr, F.; Furtig, B.; Schwalbe, H. Nature 2013, 499, 355
9. Furtig, B.; Buck, J.; Manoharan, V.; Bermel, W.; Jaschke, A.; Wenter, P.; Pitsch, S.; Schwalbe, H. Biopolymers 2007, 86, 360
10. Lee, M. K.; Gal, M.; Frydman, L.; Varani, G. Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 9192
11. Hoogstraten, C. G.; Wank, J. R.; Pardi, A. Biochemistry 2000, 39, 9951
12. Blad, H.; Reiter, N. J.; Abildgaard, F.; Markley, J. L.; Butcher, S. E. J. Mol. Biol. 2005, 353, 540
13. Massi, F.; Johnson, E.; Wang, C.; Rance, M.; Palmer, A. G., III J. Am. Chem. Soc. 2004, 126, 2247
14. Korzhnev, D. M.; Orekhov, V. Y.; Kay, L. E. J. Am. Chem. Soc. 2005, 127, 713
15. Hansen, A. L.; Nikolova, E. N.; Casiano-Negroni, A.; Al-Hashimi, H. M. J. Am. Chem. Soc. 2009, 131, 3818
16. Nikolova, E. N.; Kim, E.; Wise, A. A.; O'Brien, P. J.; Andricioaei, I.; Al-Hashimi, H. M. Nature 2011, 470, 498
17. Nikolova, E. N.; Gottardo, F. L.; Al-Hashimi, H. M. J. Am. Chem. Soc. 2012, 134, 3667
18. Dethoff, E. A.; Petzold, K.; Chugh, J.; Casiano-Negroni, A.; Al-Hashimi, H. M. Nature 2012, 491, 724
19. Palmer, A. G., 3rd; Kroenke, C. D.; Loria, J. P. Methods Enzymol. 2001, 339, 204
20. Korzhnev, D. M.; Kay, L. E. Acc. Chem. Res. 2008, 41, 442
21. Lundstrom, P.; Hansen, D. F.; Kay, L. E. J. Biomol. NMR 2008, 42, 35
22. Johnson, J. E., Jr.; Hoogstraten, C. G. J. Am. Chem. Soc. 2008, 130, 16757
23. Vallurupalli, P.; Bouvignies, G.; Kay, L. E. J. Am. Chem. Soc. 2012, 134, 8148
24. Forsen, S.; Hoffman, R. A. J. Chem. Phys. 1963, 39, 2892
25. Fawzi, N. L.; Ying, J.; Ghirlando, R.; Torchia, D. A.; Clore, G. M. Nature 2011, 480, 268
26. Bouvignies, G.; Kay, L. E. J. Phys. Chem. B 2012, 116, 14311
27. Bouvignies, G.; Kay, L. E. J. Biomol. NMR 2012, 53, 303
28. Hansen, A. L.; Bouvignies, G.; Kay, L. E. J. Biomol. NMR 2013, 55, 279
29. Vallurupalli, P.; Kay, L. E. Angew. Chem., Int. Ed. Engl. 2013, 52, 4156
30. Levitt, M. H. J. Magn. Reson. 1982, 50, 95
31. Serganov, A.; Patel, D. J. Annu. Rev. Biophys. 2012, 41, 343
32. Haller, A.; Souliere, M. F.; Micura, R. Acc. Chem. Res. 2011, 44, 1339
33. Liberman, J. A.; Wedekind, J. E. Wiley Interdiscip. Rev. RNA 2012, 3, 369
34. Baker, J. L.; Sudarsan, N.; Weinberg, Z.; Roth, A.; Stockbridge, R. B.; Breaker, R. R. Science 2012, 335, 233
35. Ren, A.; Rajashankar, K. R.; Patel, D. J. Nature 2012, 486, 85
36. McConnell, H. M. J. Chem. Phys. 1958, 28, 430
37. Palmer, A. G., III; Massi, F. Chem. Rev. 2006, 106, 1700
38. Farrow, N. A.; Zhang, O.; Forman-Kay, J. D.; Kay, L. E. J. Biomol. NMR 1994, 4, 727