-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
doi: 10.1093/nar/25.17.3389
-
Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J. H., Zhang, Z., Miller, W., et al. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402. doi: 10.1093/nar/25.17.3389.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.H.4
Zhang, Z.5
Miller, W.6
-
2
-
-
79959886819
-
Bioenergetic challenges of microbial iron metabolisms
-
doi: 10.1016/j.tim.2011.05.001
-
Bird, L. J., Bonnefoy, V., and Newman, D. K. (2011). Bioenergetic challenges of microbial iron metabolisms. Trends Microbiol. 19, 330-340. doi: 10.1016/j.tim.2011.05.001.
-
(2011)
Trends Microbiol.
, vol.19
, pp. 330-340
-
-
Bird, L.J.1
Bonnefoy, V.2
Newman, D.K.3
-
3
-
-
70350507137
-
Composition and activity of an autotrophic Fe(II)-oxidizing, nitrate-reducing enrichment culture
-
doi: 10.1128/AEM.01742-09
-
Blöthe, M., and Roden, E. E. (2009). Composition and activity of an autotrophic Fe(II)-oxidizing, nitrate-reducing enrichment culture. Appl. Environ. Microbiol. 75, 6937-6940. doi: 10.1128/AEM.01742-09.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 6937-6940
-
-
Blöthe, M.1
Roden, E.E.2
-
4
-
-
35448948699
-
Incubation of environmental samples in a diffusion chamber increases the diversity of recovered isolates
-
doi: 10.1128/AEM.01309-07
-
Bollmann, A., Lewis, K., and Epstein, S. S. (2007). Incubation of environmental samples in a diffusion chamber increases the diversity of recovered isolates. Appl. Environ. Microbiol. 73, 6386-6390. doi: 10.1128/AEM.01309-07.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 6386-6390
-
-
Bollmann, A.1
Lewis, K.2
Epstein, S.S.3
-
5
-
-
75349085401
-
Biogeochemical redox processes and their impact on contaminant dynamics
-
doi: 10.1021/es9026248
-
Borch, T., Kretzschmar, R., Kappler, A., Van Cappellen, P., Ginder-Vogel, M., Voegelin, A., et al. (2010). Biogeochemical redox processes and their impact on contaminant dynamics. Environ. Sci. Technol. 44, 15-23. doi: 10.1021/es9026248.
-
(2010)
Environ. Sci. Technol.
, vol.44
, pp. 15-23
-
-
Borch, T.1
Kretzschmar, R.2
Kappler, A.3
Van Cappellen, P.4
Ginder-Vogel, M.5
Voegelin, A.6
-
6
-
-
20044363471
-
Effects of progressive anoxia on the solubility of technetium in sediments
-
doi: 10.1021/es048124p
-
Burke, I. T., Boothman, C., Lloyd, J. R., Mortimer, R. J. G., Livens, F. R., and Morris, K. (2005). Effects of progressive anoxia on the solubility of technetium in sediments. Environ. Sci. Technol. 39, 4109-4116. doi: 10.1021/es048124p.
-
(2005)
Environ. Sci. Technol.
, vol.39
, pp. 4109-4116
-
-
Burke, I.T.1
Boothman, C.2
Lloyd, J.R.3
Mortimer, R.J.G.4
Livens, F.R.5
Morris, K.6
-
7
-
-
0035380468
-
Biogenic magnetite formation through anaerobic biooxidation of Fe(II)
-
doi: 10.1128/AEM.67.6.2844-2848.2001
-
Chaudhuri, S. K., Lack, J. G., and Coates, J. D. (2001). Biogenic magnetite formation through anaerobic biooxidation of Fe(II). Appl. Environ. Microbiol. 67, 2844-2848. doi: 10.1128/AEM.67.6.2844-2848.2001.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 2844-2848
-
-
Chaudhuri, S.K.1
Lack, J.G.2
Coates, J.D.3
-
8
-
-
3042844303
-
Identifying the sources of subsurface contamination at the Hanford Site in Washington using high-precision uranium isotopic measurements
-
doi: 10.1021/es034700q
-
Christensen, J. N., Dresel, P. E., Conrad, M. E., Maher, K., and Depaolo, D. J. (2004). Identifying the sources of subsurface contamination at the Hanford Site in Washington using high-precision uranium isotopic measurements. Environ. Sci. Technol. 38, 3330-3337. doi: 10.1021/es034700q.
-
(2004)
Environ. Sci. Technol.
, vol.38
, pp. 3330-3337
-
-
Christensen, J.N.1
Dresel, P.E.2
Conrad, M.E.3
Maher, K.4
Depaolo, D.J.5
-
9
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
doi: 10.1128/AEM.03006-05
-
Desantis, T. Z., Hugenholtz, P., Larsen, N., Rojas, M., Brodie, E. L., Keller, K., et al. (2006). Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl. Environ. Microbiol. 72, 5069-5072. doi: 10.1128/AEM.03006-05.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 5069-5072
-
-
Desantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
-
10
-
-
77249130714
-
Microbe-clay mineral interactions
-
doi: 10.2138/am.2009.3246
-
Dong, H. L., Jaisi, D. P., Kim, J., and Zhang, G. X. (2009). Microbe-clay mineral interactions. Am. Mineral. 94, 1505-1519. doi: 10.2138/am.2009.3246.
-
(2009)
Am. Mineral.
, vol.94
, pp. 1505-1519
-
-
Dong, H.L.1
Jaisi, D.P.2
Kim, J.3
Zhang, G.X.4
-
11
-
-
53849149309
-
Whole-genome transcriptional profiling of Bradyrhizobium japonicum during chemoautotrophic growth
-
doi: 10.1128/JB.00543-08
-
Franck, W. L., Chang, W. S., Qiu, J., Sugawara, M., Sadowsky, M. J., Smith, S. A., et al. (2008). Whole-genome transcriptional profiling of Bradyrhizobium japonicum during chemoautotrophic growth. J. Bacteriol. 190, 6697-6705. doi: 10.1128/JB.00543-08.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 6697-6705
-
-
Franck, W.L.1
Chang, W.S.2
Qiu, J.3
Sugawara, M.4
Sadowsky, M.J.5
Smith, S.A.6
-
12
-
-
17544372188
-
Reduction of TcO4-by sediment-associated biogenic Fe(II)
-
doi: 10.1016/j.gca.2003.10.024
-
Fredrickson, J. K., Zachara, J. M., Kennedy, D. W., Kukkadapu, R. K., McKinley, J. P., Heald, S. M., et al. (2004). Reduction of TcO4-by sediment-associated biogenic Fe(II). Geochim. Cosmochim. Acta 68, 3171-3187. doi: 10.1016/j.gca.2003.10.024.
-
(2004)
Geochim. Cosmochim. Acta
, vol.68
, pp. 3171-3187
-
-
Fredrickson, J.K.1
Zachara, J.M.2
Kennedy, D.W.3
Kukkadapu, R.K.4
McKinley, J.P.5
Heald, S.M.6
-
13
-
-
73349134931
-
Characterization of an electron conduit between bacteria and the extracellular environment
-
doi: 10.1073/pnas.0900086106
-
Hartshorne, R. S., Reardon, C. L., Ross, D., Nuester, J., Clarke, T. A., Gates, A. J., et al. (2009). Characterization of an electron conduit between bacteria and the extracellular environment. Proc. Natl. Acad. Sci. U.S.A. 106, 22169-22174. doi: 10.1073/pnas.0900086106.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 22169-22174
-
-
Hartshorne, R.S.1
Reardon, C.L.2
Ross, D.3
Nuester, J.4
Clarke, T.A.5
Gates, A.J.6
-
14
-
-
0017654644
-
Use of Nuclepore filters for counting bacteria by fluorescence microscopy
-
Hobbie, J. E., Daley, R. J., and Jasper, S. (1977). Use of Nuclepore filters for counting bacteria by fluorescence microscopy. Appl. Environ. Microbiol. 33, 1225-1228.
-
(1977)
Appl. Environ. Microbiol.
, vol.33
, pp. 1225-1228
-
-
Hobbie, J.E.1
Daley, R.J.2
Jasper, S.3
-
15
-
-
77956868541
-
A roll tube method for cultivation of strict anaerobes
-
doi: 10.1016/S0580-9517(08)70503-8.
-
Hungate, R. E. (1969). A roll tube method for cultivation of strict anaerobes. Methods Microbiol. 3B, 117-132. doi: 10.1016/S0580-9517(08)70503-8.
-
(1969)
Methods Microbiol
, vol.3 B
, pp. 117-132
-
-
Hungate, R.E.1
-
16
-
-
33846934255
-
Influence of biogenic Fe(II) on the extent of microbial reduction of Fe(III) in clay minerals nontronite, illite, and chlorite
-
doi: 10.1016/j.gca.2006.11.027
-
Jaisi, D. P., Dong, H. L., and Liu, C. X. (2007). Influence of biogenic Fe(II) on the extent of microbial reduction of Fe(III) in clay minerals nontronite, illite, and chlorite. Geochim. Cosmochim. Acta 71, 1145-1158. doi: 10.1016/j.gca.2006.11.027.
-
(2007)
Geochim. Cosmochim. Acta
, vol.71
, pp. 1145-1158
-
-
Jaisi, D.P.1
Dong, H.L.2
Liu, C.X.3
-
17
-
-
29544448213
-
Control of Fe(III) site occupancy on the rate and extent of microbial reduction of Fe(III) in nontronite
-
doi: 10.1016/j.gca.2005.07.008
-
Jaisi, D. P., Kukkadapu, R., Eberl, D. D., and Dong, H. L. (2005). Control of Fe(III) site occupancy on the rate and extent of microbial reduction of Fe(III) in nontronite. Geochim. Cosmochim. Acta 69, 5429-5440 doi: 10.1016/j.gca.2005.07.008.
-
(2005)
Geochim. Cosmochim. Acta
, vol.69
, pp. 5429-5440
-
-
Jaisi, D.P.1
Kukkadapu, R.2
Eberl, D.D.3
Dong, H.L.4
-
18
-
-
23244465664
-
Chemical reduction of U(VI) by Fe(II) at the solid-water interface using synthetic and natural iron(III) oxides
-
doi: 10.1021/es0487527
-
Jeon, B. H., Barnett, M. O., Burgos, W. D., Dempsey, B. A., and Roden, E. E. (2005). Chemical reduction of U(VI) by Fe(II) at the solid-water interface using synthetic and natural iron(III) oxides. Environ. Sci. Technol. 39, 5642-5649. doi: 10.1021/es0487527.
-
(2005)
Environ. Sci. Technol.
, vol.39
, pp. 5642-5649
-
-
Jeon, B.H.1
Barnett, M.O.2
Burgos, W.D.3
Dempsey, B.A.4
Roden, E.E.5
-
19
-
-
7444242039
-
Microbial reduction of U(VI) at the solid-water interface
-
doi: 10.1021/es0496120
-
Jeon, B. H., Kelly, S. D., Kemner, K. M., Barnett, M. O., Burgos, W. D., Dempsey, B. A., et al. (2004). Microbial reduction of U(VI) at the solid-water interface. Environ. Sci. Technol. 38, 5649-5655. doi: 10.1021/es0496120.
-
(2004)
Environ. Sci. Technol.
, vol.38
, pp. 5649-5655
-
-
Jeon, B.H.1
Kelly, S.D.2
Kemner, K.M.3
Barnett, M.O.4
Burgos, W.D.5
Dempsey, B.A.6
-
20
-
-
47049109856
-
Long-term dynamics of uranium reduction/reoxidation under low sulfate conditions
-
doi: 10.1016/j.gca.2008.05.040
-
Komlos, J., Peacock, A., Kukkadapu, R. K., and Jaffe, P. R. (2008). Long-term dynamics of uranium reduction/reoxidation under low sulfate conditions. Geochim. Cosmochim. Acta 72, 3603-3615. doi: 10.1016/j.gca.2008.05.040.
-
(2008)
Geochim. Cosmochim. Acta
, vol.72
, pp. 3603-3615
-
-
Komlos, J.1
Peacock, A.2
Kukkadapu, R.K.3
Jaffe, P.R.4
-
21
-
-
0033567993
-
Respiration and dissolution of iron(III)-containing clay minerals by bacteria
-
doi: 10.1021/es990021x
-
Kostka, J. E., Haefele, E., Vieweger, R., and Stucki, J. W. (1999). Respiration and dissolution of iron(III)-containing clay minerals by bacteria. Environ. Sci. Technol. 33, 3127-3133. doi: 10.1021/es990021x.
-
(1999)
Environ. Sci. Technol.
, vol.33
, pp. 3127-3133
-
-
Kostka, J.E.1
Haefele, E.2
Vieweger, R.3
Stucki, J.W.4
-
22
-
-
84859299668
-
Microbial reductive transformation of phyllosilicate Fe(III) and U(VI) in fluvial subsurface sediments
-
doi: 10.1021/es204528m
-
Lee, J. H., Fredrickson, J. K., Kukkadapu, R. K., Boyanov, M. I., Kemner, K. M., Lin, X. J., et al. (2012). Microbial reductive transformation of phyllosilicate Fe(III) and U(VI) in fluvial subsurface sediments. Environ. Sci. Technol. 46, 3721-3730. doi: 10.1021/es204528m.
-
(2012)
Environ. Sci. Technol.
, vol.46
, pp. 3721-3730
-
-
Lee, J.H.1
Fredrickson, J.K.2
Kukkadapu, R.K.3
Boyanov, M.I.4
Kemner, K.M.5
Lin, X.J.6
-
23
-
-
84900863272
-
Fe(II)-and sulfide-facilitated reduction of 99Tc(VII)O4-in microbially reduced hyporheic zone sediments
-
(in press), doi: 10.1016/j.gca.2013.08.017.
-
Lee, J. H., Zachara, J. M., Fredrickson, J. K., Heald, S. M., McKinley, J. P., Plymale, A. E., et al. (in press). Fe(II)-and sulfide-facilitated reduction of 99Tc(VII)O4-in microbially reduced hyporheic zone sediments. Geochim. Cosmochim. Acta. doi: 10.1016/j.gca.2013.08.017.
-
Geochim. Cosmochim. Acta.
-
-
Lee, J.H.1
Zachara, J.M.2
Fredrickson, J.K.3
Heald, S.M.4
McKinley, J.P.5
Plymale, A.E.6
-
24
-
-
84856203391
-
Distribution of microbial biomass and potential for anaerobic respiration in Hanford Site 300 Area subsurface sediment
-
doi: 10.1128/AEM.07404-11
-
Lin, X., Kennedy, D., Peacock, A., McKinley, J., Resch, C. T., Fredrickson, J., et al. (2012a). Distribution of microbial biomass and potential for anaerobic respiration in Hanford Site 300 Area subsurface sediment. Appl. Environ. Microbiol. 78, 759-767. doi: 10.1128/AEM.07404-11.
-
(2012)
Appl. Environ. Microbiol.
, vol.78
, pp. 759-767
-
-
Lin, X.1
Kennedy, D.2
Peacock, A.3
McKinley, J.4
Resch, C.T.5
Fredrickson, J.6
-
25
-
-
84856565912
-
Vertical stratification of subsurface microbial community composition across geological formations at the Hanford Site
-
doi: 10.1111/j.1462-2920.2011.02659.x
-
Lin, X. J., Kennedy, D., Fredrickson, J., Bjornstad, B., and Konopka, A. (2012b). Vertical stratification of subsurface microbial community composition across geological formations at the Hanford Site. Environ. Microbiol. 14, 414-425. doi: 10.1111/j.1462-2920.2011.02659.x.
-
(2012)
Environ. Microbiol.
, vol.14
, pp. 414-425
-
-
Lin, X.J.1
Kennedy, D.2
Fredrickson, J.3
Bjornstad, B.4
Konopka, A.5
-
26
-
-
84865341770
-
Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer
-
doi: 10.1038/ismej.2012.26
-
Lin, X. J., McKinley, J., Resch, C. T., Kaluzny, R., Lauber, C. L., Fredrickson, J., et al. (2012c). Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer. ISME J. 6, 1665-1676. doi: 10.1038/ismej.2012.26.
-
(2012)
ISME J.
, vol.6
, pp. 1665-1676
-
-
Lin, X.J.1
McKinley, J.2
Resch, C.T.3
Kaluzny, R.4
Lauber, C.L.5
Fredrickson, J.6
-
27
-
-
0025679796
-
Lithofacies and sedimentology of the Miocene-Pliocene Ringold Formation, Hanford Site, south-central Washington
-
Lindsey, K. A., and Gaylord, D. R. (1990). Lithofacies and sedimentology of the Miocene-Pliocene Ringold Formation, Hanford Site, south-central Washington. Northwest Sci. 64, 165-180.
-
(1990)
Northwest Sci.
, vol.64
, pp. 165-180
-
-
Lindsey, K.A.1
Gaylord, D.R.2
-
28
-
-
84863581057
-
Identification and characterization of MtoA: a decaheme c-type cytochrome of the neutrophilic Fe(II)-oxidizing bacterium Sideroxydans lithotrophicus ES-1
-
doi: 10.3389/fmicb.2012.00037.
-
Liu, J., Wang, Z., Belchik, S. M., Edwards, M. J., Liu, C., Kennedy, D. W., et al. (2012). Identification and characterization of MtoA: a decaheme c-type cytochrome of the neutrophilic Fe(II)-oxidizing bacterium Sideroxydans lithotrophicus ES-1. Front. Microbiol. 3:37. doi: 10.3389/fmicb.2012.00037.
-
(2012)
Front. Microbiol.
, vol.3
, pp. 37
-
-
Liu, J.1
Wang, Z.2
Belchik, S.M.3
Edwards, M.J.4
Liu, C.5
Kennedy, D.W.6
-
29
-
-
81855206235
-
Geobacter: the microbe electric's physiology, ecology, and practical applications
-
doi: 10.1016/B978-0-12-387661-4.00004-5
-
Lovley, D. R., Ueki, T., Zhang, T., Malvankar, N. S., Shrestha, P. M., Flanagan, K. A., et al. (2011). Geobacter: the microbe electric's physiology, ecology, and practical applications. Adv. Microb. Physiol. 59, 1-100. doi: 10.1016/B978-0-12-387661-4.00004-5.
-
(2011)
Adv. Microb. Physiol.
, vol.59
, pp. 1-100
-
-
Lovley, D.R.1
Ueki, T.2
Zhang, T.3
Malvankar, N.S.4
Shrestha, P.M.5
Flanagan, K.A.6
-
30
-
-
2542523843
-
ARB: a software environment for sequence data
-
doi: 10.1093/nar/gkh293
-
Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar Buchner, et al. (2004). ARB: a software environment for sequence data. Nucl. Acids Res. 32, 1363-1371. doi: 10.1093/nar/gkh293.
-
(2004)
Nucl. Acids Res.
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
Yadhukumar, B.6
-
31
-
-
77950562181
-
Thiosulfate-dependent chemolithoautotrophic growth of Bradyrhizobium japonicum
-
doi: 10.1128/AEM.02783-09
-
Masuda, S., Eda, S., Ikeda, S., Mitsui, H., and Minamisawa, K. (2010). Thiosulfate-dependent chemolithoautotrophic growth of Bradyrhizobium japonicum. Appl. Environ. Microbiol. 76, 2402-2409. doi: 10.1128/AEM.02783-09.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 2402-2409
-
-
Masuda, S.1
Eda, S.2
Ikeda, S.3
Mitsui, H.4
Minamisawa, K.5
-
32
-
-
45249121028
-
Biogeochemical processes in ethanol stimulated uranium-contaminated subsurface sediments
-
doi: 10.1021/es703082v
-
Mohanty, S., Kollah, B., Hedrick, D., Peacock, A., Kukkadapu, R. K., and Roden, E. E. (2008). Biogeochemical processes in ethanol stimulated uranium-contaminated subsurface sediments. Environ. Sci. Technol. 12, 4384-4390. doi: 10.1021/es703082v.
-
(2008)
Environ. Sci. Technol.
, vol.12
, pp. 4384-4390
-
-
Mohanty, S.1
Kollah, B.2
Hedrick, D.3
Peacock, A.4
Kukkadapu, R.K.5
Roden, E.E.6
-
33
-
-
0029097821
-
Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments
-
doi: 10.1007/BF02529967
-
Muyzer, G, A., Teske, Wirsen, C. O., and Jannasch, H. W. (1995). Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Arch. Microbiol. 164, 165-172. doi: 10.1007/BF02529967.
-
(1995)
Arch. Microbiol.
, vol.164
, pp. 165-172
-
-
Muyzer, G.A.1
Teske Wirsen, C.O.2
Jannasch, H.W.3
-
34
-
-
0020538590
-
Anaerobic nitrate-dependent chemolithotrophic growth by Rhizobium japonicum
-
doi: 10.1139/m83-052
-
Neal, J. L., Allen, G. C., Morse, R. D., and Wolf, D. D. (1983). Anaerobic nitrate-dependent chemolithotrophic growth by Rhizobium japonicum. Can. J. Microbiol. 29, 316-320. doi: 10.1139/m83-052.
-
(1983)
Can. J. Microbiol.
, vol.29
, pp. 316-320
-
-
Neal, J.L.1
Allen, G.C.2
Morse, R.D.3
Wolf, D.D.4
-
35
-
-
0036327469
-
Life at the energetic edge: kinetics of circumneutral iron oxidation by lithotrophic iron-oxidizing bacteria isolated from the wetland-plant rhizosphere
-
doi: 10.1128/AEM.68.8.3988-3995.2002
-
Neubauer, S. C., Emerson, D., and Megonigal, J. P. (2002). Life at the energetic edge: kinetics of circumneutral iron oxidation by lithotrophic iron-oxidizing bacteria isolated from the wetland-plant rhizosphere. Appl. Environ. Microbiol. 68, 3988-3995. doi: 10.1128/AEM.68.8.3988-3995.2002.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 3988-3995
-
-
Neubauer, S.C.1
Emerson, D.2
Megonigal, J.P.3
-
36
-
-
77950560416
-
Use of i-chip for high-rhroughput in situ cultivation of "uncultivable" microbial species
-
doi: 10.1128/AEM.01754-09
-
Nichols, D., Cahoon, N., Trakhtenberg, E. M., Pham, L., Mehta, A., Belanger, A., et al. (2010). Use of i-chip for high-rhroughput in situ cultivation of "uncultivable" microbial species. Appl. Environ. Microbiol. 76, 2445-2450. doi: 10.1128/AEM.01754-09.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 2445-2450
-
-
Nichols, D.1
Cahoon, N.2
Trakhtenberg, E.M.3
Pham, L.4
Mehta, A.5
Belanger, A.6
-
37
-
-
84864047242
-
-) reduction by reactive ferrous iron forms in naturally anoxic, redox transition zone sediments from the Hanford Site, USA
-
doi: 10.1016/j.gca.2012.05.041
-
-) reduction by reactive ferrous iron forms in naturally anoxic, redox transition zone sediments from the Hanford Site, USA. Geochim. Cosmochim. Acta 92, 48-66. doi: 10.1016/j.gca.2012.05.041.
-
(2012)
Geochim. Cosmochim. Acta
, vol.92
, pp. 48-66
-
-
Peretyazhko, T.S.1
Zachara, J.M.2
Kukkadapu, R.K.3
Heald, S.M.4
Kutnyakov, I.V.5
Resch, C.T.6
-
38
-
-
16544383784
-
-
Adjacent Columbia River PNNL-13674 Pacific Northwest National Laboratory. Richland, WA: Pacific Northwest National Laboratory.
-
Peterson, R. E., and Connelly, M. P. (2001). Zone of Interaction Between Hanford Site Groundwater and Adjacent Columbia River PNNL-13674 Pacific Northwest National Laboratory. Richland, WA: Pacific Northwest National Laboratory.
-
(2001)
Zone of Interaction Between Hanford Site Groundwater
-
-
Peterson, R.E.1
Connelly, M.P.2
-
39
-
-
84870177224
-
Microbial iron-redox cycling in subsurface environments
-
doi: 10.1042/BST20120202
-
Roden, E. E. (2012). Microbial iron-redox cycling in subsurface environments. Biochem. Trans. 40, 1249-1256. doi: 10.1042/BST20120202.
-
(2012)
Biochem. Trans.
, vol.40
, pp. 1249-1256
-
-
Roden, E.E.1
-
40
-
-
0027341088
-
Dissimilatory Fe(III) reduction by the marine microorganism Desulfuromonas acetoxidans
-
Roden, E. E., and Lovley, D. R. (1993). Dissimilatory Fe(III) reduction by the marine microorganism Desulfuromonas acetoxidans. Appl. Environ. Microbiol. 59, 734-742.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 734-742
-
-
Roden, E.E.1
Lovley, D.R.2
-
41
-
-
4644293674
-
Potential for microscale bacterial Fe redox cycling at the aerobic-anaerobic interface
-
doi: 10.1080/01490450490485872
-
Roden, E. E., Sobolev, D., Glazer, B., and Luther, G. W. (2004). Potential for microscale bacterial Fe redox cycling at the aerobic-anaerobic interface. Geomicrobiol. J. 21, 379-391. doi: 10.1080/01490450490485872.
-
(2004)
Geomicrobiol. J.
, vol.21
, pp. 379-391
-
-
Roden, E.E.1
Sobolev, D.2
Glazer, B.3
Luther, G.W.4
-
42
-
-
0037706942
-
Use of ferric and ferrous iron containing minerals for respiration by Desulfitobacterium frappieri
-
doi: 10.1080/01490450303884
-
Shelobolina, E. S., Gaw-Vanpraagh, C., and Lovley, D. R. (2003). Use of ferric and ferrous iron containing minerals for respiration by Desulfitobacterium frappieri. Geomicrobiol. J. 20, 143-156. doi: 10.1080/01490450303884.
-
(2003)
Geomicrobiol. J.
, vol.20
, pp. 143-156
-
-
Shelobolina, E.S.1
Gaw-Vanpraagh, C.2
Lovley, D.R.3
-
43
-
-
84870211676
-
Isolation of iron-cycling organisms from illite-smectite rich rhizosphere soil
-
doi: 10.3389/fmicb.2012.00134.
-
Shelobolina, E. S., Konishi, H., Xu, H., Benzine, J., Xiong, M., Wu, T., et al. (2012a). Isolation of iron-cycling organisms from illite-smectite rich rhizosphere soil. Front. Microbiol. 3:134. doi: 10.3389/fmicb.2012.00134.
-
(2012)
Front. Microbiol.
, vol.3
, pp. 134
-
-
Shelobolina, E.S.1
Konishi, H.2
Xu, H.3
Benzine, J.4
Xiong, M.5
Wu, T.6
-
44
-
-
84866151899
-
Microbial lithotrophic oxidation of structural Fe(II) in biotite
-
doi: 10.1128/AEM.01034-12
-
Shelobolina, E. S., Xu, H., Konishi, H., Kukkadapu, R., Wu, T., Blothe, M., et al. (2012b). Microbial lithotrophic oxidation of structural Fe(II) in biotite. Appl. Environ. Microbiol. 78, 5746-5752. doi: 10.1128/AEM.01034-12.
-
(2012)
Appl. Environ. Microbiol.
, vol.78
, pp. 5746-5752
-
-
Shelobolina, E.S.1
Xu, H.2
Konishi, H.3
Kukkadapu, R.4
Wu, T.5
Blothe, M.6
-
45
-
-
33846524416
-
Geobacter pickeringii sp.nov., Geobacter argillaceus sp. nov. and Pelosinus fermentans gen. nov., sp. nov., isolated from subsurface kaolin lenses
-
doi: 10.1099/ijs.0.64221-0
-
Shelobolina, E. S., Nevin, K. P., Blakeney-Hayward, J. D., Johnsen, C. V., Plaia, T. W., Krader, P., et al. (2007). Geobacter pickeringii sp. nov., Geobacter argillaceus sp. nov. and Pelosinus fermentans gen. nov., sp. nov., isolated from subsurface kaolin lenses. Int. J. Syst. Evol. Microbiol. 56, 126-135. doi: 10.1099/ijs.0.64221-0.
-
(2007)
Int. J. Syst. Evol. Microbiol.
, vol.56
, pp. 126-135
-
-
Shelobolina, E.S.1
Nevin, K.P.2
Blakeney-Hayward, J.D.3
Johnsen, C.V.4
Plaia, T.W.5
Krader, P.6
-
46
-
-
0001355858
-
Effects of iron oxidation state on the fate and behavior of potassium in soils
-
Special Publication Number 40. eds. J. L. Havlin and J. Jacobsen (Madison, WI: Soil Science Society of America)
-
Shen, S., and Stucki, J. W. (1994). "Effects of iron oxidation state on the fate and behavior of potassium in soils," in Soil Testing: Prospects for Improving Nutrient Recommendations, Special Publication Number 40, eds J. L. Havlin and J. Jacobsen (Madison, WI: Soil Science Society of America), 173-185.
-
(1994)
Soil Testing: Prospects for Improving Nutrient Recommendations
, pp. 173-185
-
-
Shen, S.1
Stucki, J.W.2
-
47
-
-
0742319846
-
Characterization of a neutrophilic, chemolithoautotrophic Fe(II)-oxidizing β-Proteobacterium from freshwater wetland sediments
-
doi: 10.1080/01490450490253310
-
Sobolev, D., and Roden, E. (2004). Characterization of a neutrophilic, chemolithoautotrophic Fe(II)-oxidizing β-Proteobacterium from freshwater wetland sediments. Geomicrobiol. J. 21, 1-10. doi: 10.1080/01490450490253310.
-
(2004)
Geomicrobiol. J.
, vol.21
, pp. 1-10
-
-
Sobolev, D.1
Roden, E.2
-
48
-
-
0035289822
-
Suboxic deposition of ferric iron by bacteria in opposing gradients of Fe(II) and oxygen at circumneutral pH
-
doi: 10.1128/AEM.67.3.1328-1334.2001
-
Sobolev, D., and Roden, E. E. (2001). Suboxic deposition of ferric iron by bacteria in opposing gradients of Fe(II) and oxygen at circumneutral pH. Appl. Environ. Microbiol. 67, 1328-1334. doi: 10.1128/AEM.67.3.1328-1334.2001.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 1328-1334
-
-
Sobolev, D.1
Roden, E.E.2
-
49
-
-
0026272374
-
Stimulation by lepidocrocite (γ-FeOOH) of Fe(II)-dependent nitrite reduction
-
doi: 10.1016/0016-7037(91)90307-Q
-
Sorensen, J., and Thorling, L. (1991). Stimulation by lepidocrocite (γ-FeOOH) of Fe(II)-dependent nitrite reduction. Geochim. Cosmochim. Acta 55, 1289-1294. doi: 10.1016/0016-7037(91)90307-Q.
-
(1991)
Geochim. Cosmochim. Acta
, vol.55
, pp. 1289-1294
-
-
Sorensen, J.1
Thorling, L.2
-
50
-
-
0034813332
-
Geobacter bremensis sp. nov. and Geobacter pelophilus sp. nov., two dissimilatory ferric-iron-reducing bacteria
-
doi: 10.1099/00207713-51-5-1805
-
Straub, K. L., and Buchholz-Cleven, B. E. E. (2001). Geobacter bremensis sp. nov. and Geobacter pelophilus sp. nov., two dissimilatory ferric-iron-reducing bacteria. Int. J. Syst. Evol. Microbiol. 51, 1805-1808. doi: 10.1099/00207713-51-5-1805.
-
(2001)
Int. J. Syst. Evol. Microbiol.
, vol.51
, pp. 1805-1808
-
-
Straub, K.L.1
Buchholz-Cleven, B.E.E.2
-
51
-
-
0031718884
-
The use of biologically produced ferrihydrite for the isolation of novel iron-reducing bacteria
-
doi: 10.1016/S0723-2020(98)80054-4
-
Straub, K. L., Hanzlik, M., and Buchholz-Cleven, B. E. E. (1998). The use of biologically produced ferrihydrite for the isolation of novel iron-reducing bacteria. System. Appl. Microbiol. 21, 442-449. doi: 10.1016/S0723-2020(98)80054-4.
-
(1998)
System. Appl. Microbiol.
, vol.21
, pp. 442-449
-
-
Straub, K.L.1
Hanzlik, M.2
Buchholz-Cleven, B.E.E.3
-
52
-
-
79953807920
-
A review of the effects of iron redox cycles on smectite properties
-
doi: 10.1016/j.crte.2010.10.008
-
Stucki, J. W. (2011). A review of the effects of iron redox cycles on smectite properties. C.R. Geosci. 343, 199-209. doi: 10.1016/j.crte.2010.10.008.
-
(2011)
C.R. Geosci.
, vol.343
, pp. 199-209
-
-
Stucki, J.W.1
-
53
-
-
34547781750
-
MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
-
doi: 10.1093/molbev/msm092
-
Tamura, K., Dudley, J., Nei, M., and Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24, 1596-1599. doi: 10.1093/molbev/msm092.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
54
-
-
84892154531
-
-
M.S. Thesis, Department of Bacteriology, University of Wisconsin-Madison, Madison.
-
Xiong, M. (2013). Microbial oxidation of ferrous iron in basaltic glass. M.S. Thesis, Department of Bacteriology, University of Wisconsin-Madison, Madison.
-
(2013)
Microbial oxidation of ferrous iron in basaltic glass
-
-
Xiong, M.1
-
55
-
-
84855463750
-
Effects of redox cycling of iron in nontronite on reduction of technetium
-
doi: 10.1016/j.chemgeo.2011.10.013
-
Yang, J. J., Kukkadapu, R. K., Dong, H. L., Shelobolina, E. S., Zhang, J., and Kim, J. (2012). Effects of redox cycling of iron in nontronite on reduction of technetium. Chem. Geol. 291, 206-216. doi: 10.1016/j.chemgeo.2011.10.013.
-
(2012)
Chem. Geol.
, vol.291
, pp. 206-216
-
-
Yang, J.J.1
Kukkadapu, R.K.2
Dong, H.L.3
Shelobolina, E.S.4
Zhang, J.5
Kim, J.6
-
56
-
-
36849078784
-
Geochemical processes controlling migration of tank wastes in Hanford's vadose zone
-
doi: 10.2136/vzj2006.0180
-
Zachara, J. M., Serne, J., Freshley, M., Mann, F., Anderson, F., Wood, M., et al. (2007). Geochemical processes controlling migration of tank wastes in Hanford's vadose zone. Vadose Zone J. 6, 985-1003. doi: 10.2136/vzj2006.0180.
-
(2007)
Vadose Zone J.
, vol.6
, pp. 985-1003
-
-
Zachara, J.M.1
Serne, J.2
Freshley, M.3
Mann, F.4
Anderson, F.5
Wood, M.6
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