-
1
-
-
0025183708
-
A basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DL (1990) A basic local alignment search tool. J Mol Biol 215:403-410
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.L.5
-
2
-
-
3843108113
-
Co-composting of PAH-contaminated soil with poultry manure
-
doi: 10.1111/j.1472-765X.2004.01554.x
-
Atagana HI (2004) Co-composting of PAH-contaminated soil with poultry manure. Lett Appl Microbiol 39:163-168. doi: 10.1111/ j.1472-765X.2004.01554.x
-
(2004)
Lett Appl Microbiol
, vol.39
, pp. 163-168
-
-
Atagana, H.I.1
-
3
-
-
0042197522
-
Effects of temperature and fertilizer on activity and community structure of soil ammonia oxidizers
-
doi: 10.1046/j.1462-2920.2003.00457.x
-
Avrahami S, Liesack W, Conrad R (2003) Effects of temperature and fertilizer on activity and community structure of soil ammonia oxidizers. Environ Microbiol 5:691-705. doi: 10.1046/ j.1462-2920.2003.00457.x
-
(2003)
Environ Microbiol
, vol.5
, pp. 691-705
-
-
Avrahami, S.1
Liesack, W.2
Conrad, R.3
-
4
-
-
0038824653
-
Suppressing soil-borne diseases with residue management and organic amendments
-
doi: 10.1016/S0167-1987(03)00086-2
-
Bailey KL, Lazarovits G (2003) Suppressing soil-borne diseases with residue management and organic amendments. Soil Tillage Res 72:169-180. doi: 10.1016/S0167-1987(03)00086-2
-
(2003)
Soil Tillage Res
, vol.72
, pp. 169-180
-
-
Bailey, K.L.1
Lazarovits, G.2
-
5
-
-
85047677847
-
Changes in soil fungi: Bacterial biomass ratios following reductions in the intensity of management of an upland grassland
-
doi: 10.1007/BF00382522
-
Bardgett RD, Hobbs PJ, Frostegard A (1996) Changes in soil fungi: bacterial biomass ratios following reductions in the intensity of management of an upland grassland. Biol Fertil Soils 22:261-264. doi: 10.1007/BF00382522
-
(1996)
Biol Fertil Soils
, vol.22
, pp. 261-264
-
-
Bardgett, R.D.1
Hobbs, P.J.2
Frostegard, A.3
-
6
-
-
0141650388
-
Patterns of antimicrobial activities from soil actinomycetes isolated under different conditions of pH and salinity
-
doi: 10.1046/j.1365-2672.2003.02049.x
-
Basilio A, Gonzalez I, Vicente MF, Gorrochategui J, Cabello A, Gonzalez A, Genilloud O (2003) Patterns of antimicrobial activities from soil actinomycetes isolated under different conditions of pH and salinity. J Appl Microbiol 95:814-823. doi: 10.1046/j.1365-2672.2003.02049.x
-
(2003)
J Appl Microbiol
, vol.95
, pp. 814-823
-
-
Basilio, A.1
Gonzalez, I.2
Vicente, M.F.3
Gorrochategui, J.4
Cabello, A.5
Gonzalez, A.6
Genilloud, O.7
-
7
-
-
0033771173
-
PCR primers that amplify fungal rRNA genes from environmental samples
-
doi: 10.1128/AEM.66.10.4356-4360.2000
-
Borneman J, Hartin RJ (2000) PCR primers that amplify fungal rRNA genes from environmental samples. Appl Environ Microbiol 66:4356-4360. doi: 10.1128/AEM.66.10.4356-4360.2000
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 4356-4360
-
-
Borneman, J.1
Hartin, R.J.2
-
8
-
-
0031864898
-
Determinants of soil microbial communities: Effects of agricultural management, season, and soil type on phospholipid fatty acid profiles
-
doi: 10.1007/s002489900087
-
Bossio DA, Scow KM, Gunapala N, Graham KJ (1998) Determinants of soil microbial communities: Effects of agricultural management, season, and soil type on phospholipid fatty acid profiles. Microb Ecol 36:1-12. doi: 10.1007/s002489900087
-
(1998)
Microb Ecol
, vol.36
, pp. 1-12
-
-
Bossio, D.A.1
Scow, K.M.2
Gunapala, N.3
Graham, K.J.4
-
9
-
-
0027067148
-
Seasonal fluctuations in soil microbial biomass carbon, phosphorus, and activity in no-till and reduced chemical input maize agroecosystems
-
doi: 10.1007/BF00340578
-
Buchanan M, King LD (1992) Seasonal fluctuations in soil microbial biomass carbon, phosphorus, and activity in no-till and reduced chemical input maize agroecosystems. Biol Fertil Soils 13:211-217. doi: 10.1007/ BF00340578
-
(1992)
Biol Fertil Soils
, vol.13
, pp. 211-217
-
-
Buchanan, M.1
King, L.D.2
-
10
-
-
33645105253
-
Antibiotic-producing ability by representatives of a newly discovered lineage of actinomycetes
-
doi: 10.1099/mic.0.28335-0
-
Busti E, Monciardini P, Cavaletti L, Bamonte R, Lazzarini A, Sosio M, Donadio S (2006) Antibiotic-producing ability by representatives of a newly discovered lineage of actinomycetes. Microbiology 152:675-683. doi: 10.1099/mic.0.28335-0
-
(2006)
Microbiology
, vol.152
, pp. 675-683
-
-
Busti, E.1
Monciardini, P.2
Cavaletti, L.3
Bamonte, R.4
Lazzarini, A.5
Sosio, M.6
Donadio, S.7
-
11
-
-
33846973076
-
Phylogenetic diversity of acidophilic sporoactinobacteria isolated from various Soils
-
Cho S-H, Han J-H, Seong CN, Kim SB (2006) Phylogenetic diversity of acidophilic sporoactinobacteria isolated from various Soils. J Microbiol 44:600-606
-
(2006)
J Microbiol
, vol.44
, pp. 600-606
-
-
Cho, S.-H.1
Han, J.-H.2
Seong, C.N.3
Kim, S.B.4
-
12
-
-
0034769862
-
Effect of long-term fertiliser use on acid and alkaline phosphomonoesterase and phosphodiesterase activities in managed grassland
-
Colvan SR, Syers JK, O'Donnell AG (2001) Effect of long-term fertiliser use on acid and alkaline phosphomonoesterase and phosphodiesterase activities in managed grassland. Biol Fertil Soils 34:258-263
-
(2001)
Biol Fertil Soils
, vol.34
, pp. 258-263
-
-
Colvan, S.R.1
Syers, J.K.2
O'Donnell, A.G.3
-
13
-
-
1642399010
-
Analysis of the endophytic actinobacterial population in the roots of wheat (Triticum aestivum L.) by terminal restriction fragment length polymorphism and sequencing of 16S rRNA Clones
-
doi: 10.1128/AEM.70.3.1787-1794.2004
-
Conn VM, Franco CMM (2004) Analysis of the endophytic actinobacterial population in the roots of wheat (Triticum aestivum L.) by terminal restriction fragment length polymorphism and sequencing of 16S rRNA Clones. Appl Environ Microbiol 70:1787-1794. doi: 10.1128/ AEM.70.3.1787-1794.2004
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 1787-1794
-
-
Conn, V.M.1
Franco, C.M.M.2
-
14
-
-
0027329329
-
Isolation and characterization of actinomycete antagonists of a fungal root pathogen
-
Crawford DL, Lynch JM, Whipps JM, Ousley MA (1993) Isolation and characterization of actinomycete antagonists of a fungal root pathogen. Appl Environ Microbiol 59:3899-3905
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 3899-3905
-
-
Crawford, D.L.1
Lynch, J.M.2
Whipps, J.M.3
Ousley, M.A.4
-
15
-
-
13944271950
-
Determinants of species richness in the park grass experiment
-
doi: 10.1086/427270
-
Crawley MJ, Johnston AE, Silvertown J, Dodd M, Mazancourt C, Heard MS, Henman DF, Edwards GR (2005) Determinants of species richness in the park grass experiment. Am Nat 165:179-192. doi: 10.1086/427270
-
(2005)
Am Nat
, vol.165
, pp. 179-192
-
-
Crawley, M.J.1
Johnston, A.E.2
Silvertown, J.3
Dodd, M.4
Mazancourt, C.5
Heard, M.S.6
Henman, D.F.7
Edwards, G.R.8
-
16
-
-
0345646445
-
Anti-fungal properties of chitinolytic dune soil bacteria
-
doi: 10.1016/S0038-0717(97)00100-4
-
De Boer W, Gunnewiek K, Pauline JA, Lafeber P, Janse JD, Spit BE, Woldendorp JW (1998) Anti-fungal properties of chitinolytic dune soil bacteria. Soil Biol Biochem 30:193-203. doi: 10.1016/ S0038-0717(97)00100-4
-
(1998)
Soil Biol Biochem
, vol.30
, pp. 193-203
-
-
De Boer, W.1
Gunnewiek, K.2
Pauline, J.A.3
Lafeber, P.4
Janse, J.D.5
Spit, B.E.6
Woldendorp, J.W.7
-
17
-
-
0013095682
-
Actinomycetes, promising tools to control plant diseases and to promote plant growth
-
Doumbou CL, Hamby-Salove MK, Crawford DL, Beaulieu C (2001) Actinomycetes, promising tools to control plant diseases and to promote plant growth. Phytoprotection 82:85-102
-
(2001)
Phytoprotection
, vol.82
, pp. 85-102
-
-
Doumbou, C.L.1
Hamby-Salove, M.K.2
Crawford, D.L.3
Beaulieu, C.4
-
18
-
-
0038221194
-
Formation of pseudo-terminal restriction fragments, a PCR-related bias affecting terminal restriction fragment length polymorphism analysis of microbial community structure
-
doi: 10.1128/AEM.69.5.2555-2562.2003
-
Egert M, Friedrich MW (2003) Formation of pseudo-terminal restriction fragments, a PCR-related bias affecting terminal restriction fragment length polymorphism analysis of microbial community structure. Appl Environ Microbiol 69:2555-2562. doi: 10.1128/AEM.69.5.2555-2562.2003
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 2555-2562
-
-
Egert, M.1
Friedrich, M.W.2
-
19
-
-
33746210253
-
Non-streptomycete actinomycetes as biocontrol agents of soil-borne fungal plant pathogens and as plant growth promoters
-
doi: 10.1016/j.soilbio.2005.12.017
-
El-Tarabily KA, Sivasithamparamb K (2006) Non-streptomycete actinomycetes as biocontrol agents of soil-borne fungal plant pathogens and as plant growth promoters. Soil Biol Biochem 38:1505-1520. doi: 10.1016/j.soilbio.2005.12.017
-
(2006)
Soil Biol Biochem
, vol.38
, pp. 1505-1520
-
-
El-Tarabily, K.A.1
Sivasithamparamb, K.2
-
20
-
-
0030301917
-
Microbiological differences between limed and unlimed soils and their relationship with cavity spot disease of carrots (Daucus carota L.) caused by Pythium coloratum in Western Australia
-
doi: 10.1007/BF00011443
-
El-Tarabily K, Hardy GESJ, Sivasithamparam K, Kurtböke ID (1996) Microbiological differences between limed and unlimed soils and their relationship with cavity spot disease of carrots (Daucus carota L.) caused by Pythium coloratum in Western Australia. Plant Soil 183:279-290. doi: 10.1007/BF00011443
-
(1996)
Plant Soil
, vol.183
, pp. 279-290
-
-
El-Tarabily, K.1
Hardy, G.E.S.J.2
Sivasithamparam, K.3
Kurtböke, I.D.4
-
21
-
-
0033787976
-
Biological control of Sclerotinia minor using a chitinolytic bacterium and actinomycetes
-
doi: 10.1046/j.1365-3059.2000.00494.x
-
El-Tarabily KA, Soliman MH, Nassar AH, Al-Hassani HA, Sivasithamparam K, McKenna F, Hardy GESJ (2000) Biological control of Sclerotinia minor using a chitinolytic bacterium and actinomycetes. Plant Pathol 49:573-583. doi: 10.1046/j.1365-3059.2000.00494.x
-
(2000)
Plant Pathol
, vol.49
, pp. 573-583
-
-
El-Tarabily, K.A.1
Soliman, M.H.2
Nassar, A.H.3
Al-Hassani, H.A.4
Sivasithamparam, K.5
McKenna, F.6
Hardy, G.E.S.J.7
-
22
-
-
0029748269
-
Morphological, physiological, and molecular characterization of actinomycetes isolated from dry soil, rocks, and monument surfaces
-
doi: 10.1007/s002030050350
-
Eppard M, Krumbein WE, Koch C, Rhiel E, Staley JT, Stackebrandt E (1996) Morphological, physiological, and molecular characterization of actinomycetes isolated from dry soil, rocks, and monument surfaces. Arch Microbiol 166:12-22. doi: 10.1007/s002030050350
-
(1996)
Arch Microbiol
, vol.166
, pp. 12-22
-
-
Eppard, M.1
Krumbein, W.E.2
Koch, C.3
Rhiel, E.4
Staley, J.T.5
Stackebrandt, E.6
-
23
-
-
14744292731
-
Marine actinomycetes as a source of novel secondary metabolites
-
doi: 10.1007/s10482-004-6538-8
-
Fiedler HP, Bruntner C, Bull AT et al (2005) Marine actinomycetes as a source of novel secondary metabolites. Antonie Van Leeuwenhoek 87:37-42. doi: 10.1007/s10482-004-6538-8
-
(2005)
Antonie Van Leeuwenhoek
, vol.87
, pp. 37-42
-
-
Fiedler, H.P.1
Bruntner, C.2
Bull, A.T.3
-
24
-
-
31444447130
-
The diversity and biogeography of soil bacterial communities
-
doi: 10.1073/pnas.0507535103
-
Fierer N, Jackson RB (2006) The diversity and biogeography of soil bacterial communities. Proc Natl Acad Sci USA 103:626-631. doi: 10.1073/ pnas.0507535103
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 626-631
-
-
Fierer, N.1
Jackson, R.B.2
-
25
-
-
16444374723
-
Striking a new balance between agricultural production and biodiversity
-
doi: 10.1111/j.1744-7348.2005.040078.x
-
Firbank LG (2005) Striking a new balance between agricultural production and biodiversity. Ann Appl Biol 146:163-175. doi: 10.1111/ j.1744-7348.2005.040078.x
-
(2005)
Ann Appl Biol
, vol.146
, pp. 163-175
-
-
Firbank, L.G.1
-
26
-
-
0033842018
-
Streptomyces halstedii K122 produces the antifungal compounds bafilomycin B1 and C1
-
doi: 10.1139/cjm-46-8-753
-
Frändberg E, Petersson C, Lundgren LN, Schnürer J (2000) Streptomyces halstedii K122 produces the antifungal compounds bafilomycin B1 and C1. Can J Microbiol 46:753-758. doi: 10.1139/ cjm-46-8-753
-
(2000)
Can J Microbiol
, vol.46
, pp. 753-758
-
-
Frändberg, E.1
Petersson, C.2
Lundgren, L.N.3
Schnürer, J.4
-
27
-
-
0030512270
-
Isolation of zoosporogenous actinomycetes from desert soils
-
doi: 10.1007/BF01574700
-
Garrity GM, Heimbuch BK, Gagliardi M (1996) Isolation of zoosporogenous actinomycetes from desert soils. J Ind Microbiol Biotechnol 17:260-267. doi: 10.1007/BF01574700
-
(1996)
J Ind Microbiol Biotechnol
, vol.17
, pp. 260-267
-
-
Garrity, G.M.1
Heimbuch, B.K.2
Gagliardi, M.3
-
28
-
-
0034104061
-
Chitinolytic activity of actinomycetes from a cerrado soil and their potential in biocontrol
-
doi: 10.1046/j.1472-765x.2000.00687.x
-
Gomes RC, Semedo LTAS, Soares RMA, Alviano CS, Alviano LFL, Coelho RRR (2000) Chitinolytic activity of actinomycetes from a cerrado soil and their potential in biocontrol. Lett Appl Microbiol 30:146-150. doi: 10.1046/j.1472-765x.2000.00687.x
-
(2000)
Lett Appl Microbiol
, vol.30
, pp. 146-150
-
-
Gomes, R.C.1
Semedo, L.T.A.S.2
Soares, R.M.A.3
Alviano, C.S.4
Alviano, L.F.L.5
Coelho, R.R.R.6
-
29
-
-
0020697879
-
Ecology of actinomycetes
-
doi: 10.1146/annurev.mi.37.100183.001201
-
Goodfellow M, Williams ST (1983) Ecology of actinomycetes. Annu Rev Microbiol 37:189-216. doi: 10.1146/annurev.mi.37.100183.001201
-
(1983)
Annu Rev Microbiol
, vol.37
, pp. 189-216
-
-
Goodfellow, M.1
Williams, S.T.2
-
30
-
-
0035077010
-
Accounting for variability in soil microbial communities of temperate upland grassland ecosystems
-
doi: 10.1016/S0038-0717(00)00194-2
-
Grayston S, Griffith GS, Mawdsley JL, Campbell CD, Bardgett RD (2001) Accounting for variability in soil microbial communities of temperate upland grassland ecosystems. Soil Biol Biochem 33:533-551. doi: 10.1016/ S0038-0717(00)00194-2
-
(2001)
Soil Biol Biochem
, vol.33
, pp. 533-551
-
-
Grayston, S.1
Griffith, G.S.2
Mawdsley, J.L.3
Campbell, C.D.4
Bardgett, R.D.5
-
31
-
-
0346306031
-
Assessing shifts in microbial community structure across a range of grasslands of differing management intensity using CLPP, PLFA and community DNA techniques
-
doi: 10.1016/S0929-1393(03)00098-2
-
Grayston S, Campbell CD, Bardgett RD et al (2004) Assessing shifts in microbial community structure across a range of grasslands of differing management intensity using CLPP, PLFA and community DNA techniques. Appl Soil Ecol 25:63-84. doi: 10.1016/S0929-1393(03)00098-2
-
(2004)
Appl Soil Ecol
, vol.25
, pp. 63-84
-
-
Grayston, S.1
Campbell, C.D.2
Bardgett, R.D.3
-
32
-
-
0034468557
-
Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition
-
Griffiths RI, Whiteley AS, O'Donnell AG, Bailey MJ (2000) Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition. Appl Environ Microbiol 66:5466-5491
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 5466-5491
-
-
Griffiths, R.I.1
Whiteley, A.S.2
O'Donnell, A.G.3
Bailey, M.J.4
-
33
-
-
2142693247
-
Physiological and community responses of established grassland bacterial populations to water stress
-
doi: 10.1128/AEM.69.12.6961-6968.2003
-
Griffiths RI, Whiteley AS, O'Donnell AG, Bailey MJ (2003a) Physiological and community responses of established grassland bacterial populations to water stress. Appl Environ Microbiol 69:6961-6968. doi: 10.1128/ AEM.69.12.6961-6968.2003
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 6961-6968
-
-
Griffiths, R.I.1
Whiteley, A.S.2
O'Donnell, A.G.3
Bailey, M.J.4
-
34
-
-
0037316454
-
Influence of depth and sampling time on bacterial community structure in an upland grassland soil
-
doi: 10.1111/j.1574-6941.2003.tb01043.x
-
Griffiths RI, Whiteley AS, O'Donnell AG, Bailey MJ (2003b) Influence of depth and sampling time on bacterial community structure in an upland grassland soil. FEMS Microbiol Ecol 43:35-43. doi: 10.1111/ j.1574-6941.2003.tb01043.x
-
(2003)
FEMS Microbiol Ecol
, vol.43
, pp. 35-43
-
-
Griffiths, R.I.1
Whiteley, A.S.2
O'Donnell, A.G.3
Bailey, M.J.4
-
36
-
-
0030616797
-
Seasonal responses in microbial biomass carbon, phosphorus and sulphur in soils under pasture
-
doi: 10.1007/s003740050267
-
He ZL, Wu J, O'Donnell AG, Syers JK (1997) Seasonal responses in microbial biomass carbon, phosphorus and sulphur in soils under pasture. Biol Fertil Soils 24:421-428. doi: 10.1007/s003740050267
-
(1997)
Biol Fertil Soils
, vol.24
, pp. 421-428
-
-
He, Z.L.1
Wu, J.2
O'Donnell, A.G.3
Syers, J.K.4
-
37
-
-
0003139625
-
Basis for the control of soilborne plant pathogens with composts
-
doi: 10.1146/annurev.py.24.090186.00052
-
Hoitink HAJ, Fahy PC (1986) Basis for the control of soilborne plant pathogens with composts. Annu Rev Phytopathol 24:93-114. doi: 10.1146/ annurev.py.24.090186.000521
-
(1986)
Annu Rev Phytopathol
, vol.24
, pp. 93-114
-
-
Hoitink, H.A.J.1
Fahy, P.C.2
-
38
-
-
4644255313
-
Does organic farming benefit biodiversity?
-
doi: 10.1016/j.biocon.2004.07.018
-
Hole DG, Perkins AJ, Wilson JD, Alexander IH, Grice PV, Evans AD (2005) Does organic farming benefit biodiversity? Biol Conserv 122:113-130. doi: 10.1016/j.biocon.2004.07.018
-
(2005)
Biol Conserv
, vol.122
, pp. 113-130
-
-
Hole, D.G.1
Perkins, A.J.2
Wilson, J.D.3
Alexander, I.H.4
Grice, P.V.5
Evans, A.D.6
-
39
-
-
0028236430
-
Variations in the spectra of biological activities of actinomycetes isolated from different soils
-
doi: 10.1111/j.1472-765X.1994.tb00829.x
-
Holmalahti J, von Wright A, Raatikainen AO (1994) Variations in the spectra of biological activities of actinomycetes isolated from different soils. Lett Appl Microbiol 18:1544-1546. doi: 10.1111/ j.1472-765X.1994.tb00829.x
-
(1994)
Lett Appl Microbiol
, vol.18
, pp. 1544-1546
-
-
Holmalahti, J.1
von Wright, A.2
Raatikainen, A.O.3
-
40
-
-
0035406542
-
Impact of fumigants on soil microbial communities
-
doi: 10.1128/AEM.67.7.3245-3257.2001
-
Ibekwe AM, Papiernik SK, Gan J, Yates SR, Yang CH, Crowley DE (2001) Impact of fumigants on soil microbial communities. Appl Environ Microbiol 7:3245-3257. doi: 10.1128/AEM.67.7.3245-3257.2001
-
(2001)
Appl Environ Microbiol
, vol.7
, pp. 3245-3257
-
-
Ibekwe, A.M.1
Papiernik, S.K.2
Gan, J.3
Yates, S.R.4
Yang, C.H.5
Crowley, D.E.6
-
41
-
-
0030305457
-
R: A language for data analysis and graphics
-
doi: 10.2307/1390807
-
Ihaka R, Gentleman R (1996) R: A language for data analysis and graphics. J Comput Graph Statist 5:229-314. doi: 10.2307/1390807
-
(1996)
J Comput Graph Statist
, vol.5
, pp. 229-314
-
-
Ihaka, R.1
Gentleman, R.2
-
43
-
-
33646382598
-
Microbial community analysis of soils contaminated with lead, chromium and petroleum hydrocarbons
-
doi: 10.1007/s00248-005-0205-0
-
Joynt J, Bischoff M, Turco R, Konopka A, Nakatsu CH (2006) Microbial community analysis of soils contaminated with lead, chromium and petroleum hydrocarbons. Microb Ecol 51:209-219. doi: 10.1007/ s00248-005-0205-0
-
(2006)
Microb Ecol
, vol.51
, pp. 209-219
-
-
Joynt, J.1
Bischoff, M.2
Turco, R.3
Konopka, A.4
Nakatsu, C.H.5
-
44
-
-
0037728487
-
Variation between observed and true terminal restriction fragment length is dependent on true TRF length and purine content
-
doi: 10.1016/S0167-7012(03)00003-4
-
Kaplan CW, Kitts CL (2003) Variation between observed and true terminal restriction fragment length is dependent on true TRF length and purine content. J Microbiol Methods 54:121-125. doi: 10.1016/ S0167-7012(03)00003-4
-
(2003)
J Microbiol Methods
, vol.54
, pp. 121-125
-
-
Kaplan, C.W.1
Kitts, C.L.2
-
45
-
-
18944375499
-
Impact of lime, nitrogen and plant species on fungal community structure in grassland microcosms
-
doi: 10.1111/j.1462-2920.2005.00748.x
-
Kennedy N, Connolly J, Clipson N (2005a) Impact of lime, nitrogen and plant species on fungal community structure in grassland microcosms. Environ Microbiol 7:780-788. doi: 10.1111/j.1462-2920.2005.00748.x
-
(2005)
Environ Microbiol
, vol.7
, pp. 780-788
-
-
Kennedy, N.1
Connolly, J.2
Clipson, N.3
-
46
-
-
22044441130
-
Seasonal and management influences on bacterial community structure in an upland grassland soil
-
doi: 10.1016/j.femsec.2005.01.013
-
Kennedy NM, Gleeson DE, Connolly J, Clipson NJW (2005b) Seasonal and management influences on bacterial community structure in an upland grassland soil. FEMS Microbiol Ecol 53:329-337. doi: 10.1016/ j.femsec.2005.01.013
-
(2005)
FEMS Microbiol Ecol
, vol.53
, pp. 329-337
-
-
Kennedy, N.M.1
Gleeson, D.E.2
Connolly, J.3
Clipson, N.J.W.4
-
47
-
-
0038324316
-
Streptacidiphilus gen. nov., acidophilic actinomycetes with wall chemotype I and emendation of the family Streptomycetaceae
-
doi: 10.1023/A:1023397724023
-
Kim SB, Lonsdale J, Seong C-N, Goodfellow M (2003) Streptacidiphilus gen. nov., acidophilic actinomycetes with wall chemotype I and emendation of the family Streptomycetaceae. Antonie Van Leeuwenhoek 83:107-116. doi: 10.1023/A:1023397724023
-
(2003)
Antonie Van Leeuwenhoek
, vol.83
, pp. 107-116
-
-
Kim, S.B.1
Lonsdale, J.2
Seong, C.-N.3
Goodfellow, M.4
-
48
-
-
33845607666
-
Archaeal diversity in Icelandic hot springs
-
doi: 10.1111/j.1574-6941.2006.00209.x
-
Kvist T, Ahring BK, Westermann P (2007) Archaeal diversity in Icelandic hot springs. FEMS Microbiol Ecol 59:71-80. doi: 10.1111/ j.1574-6941.2006.00209.x
-
(2007)
FEMS Microbiol Ecol
, vol.59
, pp. 71-80
-
-
Kvist, T.1
Ahring, B.K.2
Westermann, P.3
-
49
-
-
0034449443
-
Rare genera of actinomycetes as potential producers of new antibiotics
-
doi: 10.1023/A:1010287600557
-
Lazzarini A, Cavaletti L, Toppo G, Marinelli F (2000) Rare genera of actinomycetes as potential producers of new antibiotics. Antonie Van Leeuwenhoek 78:399-405. doi: 10.1023/A:1010287600557
-
(2000)
Antonie Van Leeuwenhoek
, vol.78
, pp. 399-405
-
-
Lazzarini, A.1
Cavaletti, L.2
Toppo, G.3
Marinelli, F.4
-
50
-
-
33947135278
-
Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YX
-
doi: 10.1128/JB.01899-06
-
Lykidis A, Mavromatis K, Ivanova N, Anderson I, Land M, DiBartolo G, Martinez M, Lapidus A, Lucas S, Copeland A, Richardson P, Wilson DB, Kyrpides N (2007) Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YX. J Bacteriol 189:2477-2486. doi: 10.1128/JB.01899-06
-
(2007)
J Bacteriol
, vol.189
, pp. 2477-2486
-
-
Lykidis, A.1
Mavromatis, K.2
Ivanova, N.3
Anderson, I.4
Land, M.5
DiBartolo, G.6
Martinez, M.7
Lapidus, A.8
Lucas, S.9
Copeland, A.10
Richardson, P.11
Wilson, D.B.12
Kyrpides, N.13
-
51
-
-
0028231563
-
Tuberculostearic acid as a means of estimating the recovery (using dispersion and differential centrifugation) of actinomycetes from soil
-
doi: 10.1016/0167-7012(94)90065-5
-
Macnaughton SJ, O'Donnell AG (1994) Tuberculostearic acid as a means of estimating the recovery (using dispersion and differential centrifugation) of actinomycetes from soil. J Microbiol Methods 20:69-77. doi: 10.1016/0167-7012(94)90065-5
-
(1994)
J Microbiol Methods
, vol.20
, pp. 69-77
-
-
Macnaughton, S.J.1
O'Donnell, A.G.2
-
52
-
-
0037205025
-
Soil fertility and biodiversity in organic farming
-
doi: 10.1126/science.1071148
-
Mader P, Fliebbach A, Dubois D, Gunst L, Fried P, Niggli U (2002) Soil fertility and biodiversity in organic farming. Science 296:1694-1697. doi: 10.1126/science.1071148
-
(2002)
Science
, vol.296
, pp. 1694-1697
-
-
Mader, P.1
Fliebbach, A.2
Dubois, D.3
Gunst, L.4
Fried, P.5
Niggli, U.6
-
53
-
-
0032918722
-
A new version of the RDP (ribosomal database project)
-
doi: 10.1093/nar/27.1.171
-
Maidak BL, Cole JR, Parker JCT et al (1999) A new version of the RDP (ribosomal database project). Nucleic Acids Res 27:171-173. doi: 10.1093/ nar/27.1.171
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 171-173
-
-
Maidak, B.L.1
Cole, J.R.2
Parker, J.C.T.3
-
54
-
-
33846222279
-
Bacterial communities in Arctic fields of Finnish Lapland are stable but highly pH-dependent
-
doi: 10.1111/j.1574-6941.2006.00232.x
-
Männistö MK, Tiirola M, Häggblom MM (2007) Bacterial communities in Arctic fields of Finnish Lapland are stable but highly pH-dependent. FEMS Microbiol Ecol 59:452-465. doi: 10.1111/ j.1574-6941.2006.00232.x
-
(2007)
FEMS Microbiol Ecol
, vol.59
, pp. 452-465
-
-
Männistö, M.K.1
Tiirola, M.2
Häggblom, M.M.3
-
55
-
-
0033868092
-
Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis
-
doi: 10.1128/AEM.66.8.3616-3620.2000
-
Marsh TL, Saxman P, Cole J, Tiedje J (2000) Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis. Appl Environ Microbiol 66:3616-3620. doi: 10.1128/AEM.66.8.3616-3620.2000
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 3616-3620
-
-
Marsh, T.L.1
Saxman, P.2
Cole, J.3
Tiedje, J.4
-
56
-
-
0004265382
-
-
School of Biomolecular and Biomedical Science, Faculty of Science and Technology, Griffith University, Brisbane
-
McCarthy C (1996) Chromas, version 1.2. School of Biomolecular and Biomedical Science, Faculty of Science and Technology, Griffith University, Brisbane
-
(1996)
Chromas, Version 1.2
-
-
McCarthy, C.1
-
57
-
-
0000259810
-
Methods for studying the ecology of actinomycetes
-
doi: 10.1016/S0580-9517(08)70254-X
-
McCarthy AJ, Williams ST (1990) Methods for studying the ecology of actinomycetes. Methods Microbiol 22:533-563. doi: 10.1016/ S0580-9517(08)70254-X
-
(1990)
Methods Microbiol
, vol.22
, pp. 533-563
-
-
McCarthy, A.J.1
Williams, S.T.2
-
58
-
-
0026648526
-
Actinomycetes as agents of biodegradation in the environment - A review
-
doi: 10.1016/0378-1119(92)90558-7
-
McCarthy AJ, Williams ST (1992) Actinomycetes as agents of biodegradation in the environment - a review. Gene 115:189-192. doi: 10.1016/0378-1119(92)90558-7
-
(1992)
Gene
, vol.115
, pp. 189-192
-
-
McCarthy, A.J.1
Williams, S.T.2
-
59
-
-
0028163520
-
Sulphate-S amendments in soil and their effect on the transformation of soil sulphur
-
doi: 10.1016/0038-0717(94)90092-2
-
O'Donnell AG, Wu J, Syers JK (1994) Sulphate-S amendments in soil and their effect on the transformation of soil sulphur. Soil Biol Biochem 26:1507-1514. doi: 10.1016/0038-0717(94)90092-2
-
(1994)
Soil Biol Biochem
, vol.26
, pp. 1507-1514
-
-
O'Donnell, A.G.1
Wu, J.2
Syers, J.K.3
-
60
-
-
0034953840
-
Plants and fertilisers as drivers of change in microbial community structure and function in soils
-
doi: 10.1023/A:1010394221729
-
O'Donnell AG, Seasman M, Macrae A, Waite I, Davies JT (2001) Plants and fertilisers as drivers of change in microbial community structure and function in soils. Plant Soil 232:135-145. doi: 10.1023/A:1010394221729
-
(2001)
Plant Soil
, vol.232
, pp. 135-145
-
-
O'Donnell, A.G.1
Seasman, M.2
Macrae, A.3
Waite, I.4
Davies, J.T.5
-
61
-
-
34548011938
-
Visualization, modelling and prediction in soil microbiology
-
doi: 10.1038/nrmicro1714
-
O'Donnell AG, Young IM, Rushton SP, Shirley MD, Crawford JW (2007) Visualization, modelling and prediction in soil microbiology. Nat Rev Microbiol 5:689-699. doi: 10.1038/nrmicro1714
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 689-699
-
-
O'Donnell, A.G.1
Young, I.M.2
Rushton, S.P.3
Shirley, M.D.4
Crawford, J.W.5
-
62
-
-
0001365172
-
Factors associated with soil receptivity to some fungal root rot pathogens of peas
-
doi: 10.1016/S0929-1393(98)00042-0
-
Oyarzuna PJ, Gerlaghb M, Zadoksc JC (1998) Factors associated with soil receptivity to some fungal root rot pathogens of peas. Appl Soil Ecol 10:151-169. doi: 10.1016/S0929-1393(98)00042-0
-
(1998)
Appl Soil Ecol
, vol.10
, pp. 151-169
-
-
Oyarzuna, P.J.1
Gerlaghb, M.2
Zadoksc, J.C.3
-
63
-
-
0003858895
-
-
Oxford University Press, London
-
Pawson HC (1960) Cockle park farm. Oxford University Press, London
-
(1960)
Cockle Park Farm
-
-
Pawson, H.C.1
-
64
-
-
32144455584
-
Redox fluctuation structures microbial communities in a wet tropical soil
-
doi: 10.1128/AEM.71.11.6998-7007.2005
-
Pett-Ridge J, Firestone MK (2005) Redox fluctuation structures microbial communities in a wet tropical soil. Appl Environ Microbiol 71:6998-7007. doi: 10.1128/AEM.71.11.6998-7007.2005
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 6998-7007
-
-
Pett-Ridge, J.1
Firestone, M.K.2
-
65
-
-
0034975949
-
Motility responses and desiccation survival of zoospores from the actinomycete Kineosporia sp. Strain SR11
-
Radajewski S, Duxbury T (2001) Motility responses and desiccation survival of zoospores from the actinomycete Kineosporia sp. Strain SR11. Microb Ecol 41:233-244
-
(2001)
Microb Ecol
, vol.41
, pp. 233-244
-
-
Radajewski, S.1
Duxbury, T.2
-
66
-
-
0020873967
-
Microbial ecology of the soils of Indian desert
-
doi: 10.1016/0167-8809(83)90087-7
-
Rao AV, Venkateswarlu B (1983) Microbial ecology of the soils of Indian desert. Agric Ecosyst Environ 10:361-369. doi: 10.1016/ 0167-8809(83)90087-7
-
(1983)
Agric Ecosyst Environ
, vol.10
, pp. 361-369
-
-
Rao, A.V.1
Venkateswarlu, B.2
-
67
-
-
50249150207
-
Advances in the use of terminal restriction fragment length polymorphism (T-RFLP) analysis of 16S rRNA genes to characterize microbial communities
-
doi: 10.1007/s00253-008-1565-4
-
Schütte UME, Abdo Z, Bent SJ, Shyu C, Williams CJ, Pierson JD, Forney LJ (2008) Advances in the use of terminal restriction fragment length polymorphism (T-RFLP) analysis of 16S rRNA genes to characterize microbial communities. Appl Microbiol Biotechnol 80:365-380. doi: 10.1007/s00253-008-1565-4
-
(2008)
Appl Microbiol Biotechnol
, vol.80
, pp. 365-380
-
-
Schütte, U.M.E.1
Abdo, Z.2
Bent, S.J.3
Shyu, C.4
Williams, C.J.5
Pierson, J.D.6
Forney, L.J.7
-
68
-
-
0021577652
-
Changes in soil structure and biological-activity on some meadow hay plots at cockle-park, Northumberland
-
doi: 10.1007/BF02205592
-
Shiel RS, Rimmer DL (1984) Changes in soil structure and biological-activity on some meadow hay plots at cockle-park, Northumberland. Plant Soil 76:349-356. doi: 10.1007/BF02205592
-
(1984)
Plant Soil
, vol.76
, pp. 349-356
-
-
Shiel, R.S.1
Rimmer, D.L.2
-
69
-
-
51249175490
-
Isolation and identification of Micrococcus roseus and Planococcus sp from Schirmacher Oasis, Antarctica
-
doi: 10.1007/BF02703452
-
Shivaji SN, Shyamala Rao L, Saisree L, Sheth V, Reddy GSN, Bhargava PM (1988) Isolation and identification of Micrococcus roseus and Planococcus sp from Schirmacher Oasis, Antarctica. J Biosci 13:409-414. doi: 10.1007/BF02703452
-
(1988)
J Biosci
, vol.13
, pp. 409-414
-
-
Shivaji, S.N.1
Shyamala Rao, L.2
Saisree, L.3
Sheth, V.4
Reddy, G.S.N.5
Bhargava, P.M.6
-
70
-
-
33645461250
-
Evaluation of quantitative polymerase chain reaction-based approaches for determining gene copy and gene transcript numbers in environmental samples
-
doi: 10.1111/j.1462-2920.2005.00963.x
-
Smith CJ, Nedwell DB, Dong LF, Osborn AM (2006) Evaluation of quantitative polymerase chain reaction-based approaches for determining gene copy and gene transcript numbers in environmental samples. Environ Microbiol 8:804-815. doi: 10.1111/j.1462-2920.2005.00963.x
-
(2006)
Environ Microbiol
, vol.8
, pp. 804-815
-
-
Smith, C.J.1
Nedwell, D.B.2
Dong, L.F.3
Osborn, A.M.4
-
71
-
-
0141564899
-
New primers for the class actinobacteria: Application to marine and terrestrial environments
-
doi: 10.1046/j.1462-2920.2003.00483.x
-
Stach JEM, Maldonado LA, Ward AC, Goodfellow M, Bull AT (2003) New primers for the class actinobacteria: Application to marine and terrestrial environments. Environ Microbiol 10:828-841. doi: 10.1046/ j.1462-2920.2003.00483.x
-
(2003)
Environ Microbiol
, vol.10
, pp. 828-841
-
-
Stach, J.E.M.1
Maldonado, L.A.2
Ward, A.C.3
Goodfellow, M.4
Bull, A.T.5
-
72
-
-
0022843649
-
Canonical correspondence analysis: A new eigenvector technique for multivariate direct gradient analysis
-
doi: 10.2307/1938672
-
ter Braak CJF (1986) Canonical correspondence analysis: A new eigenvector technique for multivariate direct gradient analysis. Ecology 67:1167-1179. doi: 10.2307/1938672
-
(1986)
Ecology
, vol.67
, pp. 1167-1179
-
-
ter Braak, C.J.F.1
-
73
-
-
0002958175
-
An enrichment method for isolating actinomycetes that produce diffusible antifungal antibiotics
-
Tsao PH, Leben C, Keitt GW (1960) An enrichment method for isolating actinomycetes that produce diffusible antifungal antibiotics. Phytopathology 50:88-89
-
(1960)
Phytopathology
, vol.50
, pp. 88-89
-
-
Tsao, P.H.1
Leben, C.2
Keitt, G.W.3
-
74
-
-
4143069190
-
Contrasting effects of manure and compost on soil pH, heavy metal availability and growth of Chenopodium album L. in a soil contaminated by pyritic mine waste
-
doi: 10.1016/j.chemosphere.2004.05.020
-
Walker DJ, Clemente R, Bernal MP (2004) Contrasting effects of manure and compost on soil pH, heavy metal availability and growth of Chenopodium album L. in a soil contaminated by pyritic mine waste. Chemosphere 57:215-224. doi: 10.1016/j.chemosphere.2004.05.020
-
(2004)
Chemosphere
, vol.57
, pp. 215-224
-
-
Walker, D.J.1
Clemente, R.2
Bernal, M.P.3
-
75
-
-
0016923555
-
Degradation of carbofuran by soil microorganisms
-
doi: 10.1007/BF01685169
-
Williams IH, Pepin HS, Brown MJ (1976) Degradation of carbofuran by soil microorganisms. Bull Environ Contam Toxicol 15:244-249. doi: 10.1007/ BF01685169
-
(1976)
Bull Environ Contam Toxicol
, vol.15
, pp. 244-249
-
-
Williams, I.H.1
Pepin, H.S.2
Brown, M.J.3
-
76
-
-
11144267778
-
The proportional mineralisation of microbial biomass and organic matter caused by air-drying and rewetting of a grassland soil
-
Wu J, Brookes PC (2005) The proportional mineralisation of microbial biomass and organic matter caused by air-drying and rewetting of a grassland soil. Soil Biol Biochem 37:507-515. doi: 10.1016/ j.soilbio.2004.07.043
-
(2005)
Soil Biol Biochem
, vol.37
, pp. 507-515
-
-
Wu, J.1
Brookes, P.C.2
-
77
-
-
0029770480
-
Diversity of soil actinomycetes in Yunnan, China
-
Xu L, Li Q, Jiang C (1996) Diversity of soil actinomycetes in Yunnan, China. Appl Environ Microbiol 62:244-248
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 244-248
-
-
Xu, L.1
Li, Q.2
Jiang, C.3
-
78
-
-
33744743744
-
Neutrotolerant acidophilic Streptomyces species isolated from acidic soils in China: Streptomyces guanduensis sp. nov., Streptomyces paucisporeus sp. nov., Streptomyces rubidus sp. nov. and Streptomyces yanglinensis sp. nov
-
doi: 10.1099/ijs.0.63959-0
-
Xu C, Wang L, Cui Q, Huang Y, Liu Z, Zheng G, Goodfellow M (2006) Neutrotolerant acidophilic Streptomyces species isolated from acidic soils in China: Streptomyces guanduensis sp. nov., Streptomyces paucisporeus sp. nov., Streptomyces rubidus sp. nov. and Streptomyces yanglinensis sp. nov. Int J Syst Evol Microbiol 56:1109-1115. doi: 10.1099/ijs.0.63959-0
-
(2006)
Int J Syst Evol Microbiol
, vol.56
, pp. 1109-1115
-
-
Xu, C.1
Wang, L.2
Cui, Q.3
Huang, Y.4
Liu, Z.5
Zheng, G.6
Goodfellow, M.7
-
79
-
-
33846998983
-
Disturbance and recovery of microbial community structure and function following Hurricane Frances
-
doi: 10.1111/j.1462-2920.2006.01173.x
-
Yannarell AC, Steppe TF, Paerl HW (2007) Disturbance and recovery of microbial community structure and function following Hurricane Frances. Environ Microbiol 9:576-583. doi: 10.1111/j.1462-2920.2006.01173.x
-
(2007)
Environ Microbiol
, vol.9
, pp. 576-583
-
-
Yannarell, A.C.1
Steppe, T.F.2
Paerl, H.W.3
-
80
-
-
33846241617
-
Size and structure of bacterial, fungal and nematode communities along an Antarctic environmental gradient
-
doi: 10.1111/j.1574-6941.2006.00200.x
-
Yergeau E, Bokhorst S, Huiskes AHL, Boschker HTS, Aerts R, Kowalchuk GA (2007) Size and structure of bacterial, fungal and nematode communities along an Antarctic environmental gradient. FEMS Microbiol Ecol 59:436-451. doi: 10.1111/j.1574-6941.2006.00200.x
-
(2007)
FEMS Microbiol Ecol
, vol.59
, pp. 436-451
-
-
Yergeau, E.1
Bokhorst, S.2
Huiskes, A.H.L.3
Boschker, H.T.S.4
Aerts, R.5
Kowalchuk, G.A.6
-
81
-
-
1842530495
-
Effects of tillage and inorganic fertilizers on culturable soil actinomycete communities and inhibition of fungi by specific actinomycetes
-
doi: 10.1016/j.apsoil.2003.10.004
-
Zaitlin B, Turkington K, Parkinson D, Clayton G (2004) Effects of tillage and inorganic fertilizers on culturable soil actinomycete communities and inhibition of fungi by specific actinomycetes. Appl Soil Ecol 26:53-62. doi: 10.1016/j.apsoil.2003.10.004
-
(2004)
Appl Soil Ecol
, vol.26
, pp. 53-62
-
-
Zaitlin, B.1
Turkington, K.2
Parkinson, D.3
Clayton, G.4
-
83
-
-
34249845279
-
Influence of moisture on the vital activity of actinomycetes in a cultivated low-moor peat soil
-
doi: 10.1134/S1064229307050110
-
Zenova GM, Gryadunova AA, Doroshenko EA, Likhacheva AA, Sudnitsyn II, Pochatkova TN, Zvyagintsev DG (2007) Influence of moisture on the vital activity of actinomycetes in a cultivated low-moor peat soil. Eur Soil Sci 40:560-564. doi: 10.1134/S1064229307050110
-
(2007)
Eur Soil Sci
, vol.40
, pp. 560-564
-
-
Zenova, G.M.1
Gryadunova, A.A.2
Doroshenko, E.A.3
Likhacheva, A.A.4
Sudnitsyn, I.I.5
Pochatkova, T.N.6
Zvyagintsev, D.G.7
-
84
-
-
45149092660
-
Evaluation of terminal-restriction fragment length polymorphism analysis in contrastingmarine environments
-
doi: 10.1111/j.1574-6941.2008.00493.x
-
Zhang R, Thiyagarajan V, Qian P-Y (2008) Evaluation of terminal-restriction fragment length polymorphism analysis in contrastingmarine environments. FEMS Microbiol Ecol 65:169-178. doi: 10.1111/j.1574-6941.2008.00493.x
-
(2008)
FEMS Microbiol Ecol
, vol.65
, pp. 169-178
-
-
Zhang, R.1
Thiyagarajan, V.2
Qian, P.-Y.3
-
85
-
-
0033975359
-
A review of microbiology in swine manure odor control
-
doi: 10.1016/S0167-8809(99)00116-4
-
Zhu J (2000) A review of microbiology in swine manure odor control. Agric Ecosyst Environ 78:93-106. doi: 10.1016/S0167-8809(99)00116-4
-
(2000)
Agric Ecosyst Environ
, vol.78
, pp. 93-106
-
-
Zhu, J.1
|