-
1
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
-
Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL & Mori H (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2: 1-11.
-
(2006)
Mol Syst Biol
, vol.2
, pp. 1-11
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
2
-
-
0029868994
-
Overproduction of DNA cytosine methyltransferases causes methylation and CT mutations at non-canonical sites
-
Bandaru B, Gopal J & Bhagwat AS (1996) Overproduction of DNA cytosine methyltransferases causes methylation and CT mutations at non-canonical sites. J Biol Chem 271: 7851-7859.
-
(1996)
J Biol Chem
, vol.271
, pp. 7851-7859
-
-
Bandaru, B.1
Gopal, J.2
Bhagwat, A.S.3
-
3
-
-
33645550078
-
An orphan DNA (cytosine-5-)-methyltransferase in Vibrio cholerae
-
Banerjee S & Chowdhury R (2006) An orphan DNA (cytosine-5-)-methyltransferase in Vibrio cholerae. Microbiology 152: 1055-1062.
-
(2006)
Microbiology
, vol.152
, pp. 1055-1062
-
-
Banerjee, S.1
Chowdhury, R.2
-
4
-
-
50249116226
-
Small multidrug resistance proteins: a multidrug transporter family that continues to grow
-
Bay DC, Rommens KL & Turner RJ (2008) Small multidrug resistance proteins: a multidrug transporter family that continues to grow. Biochim Biophys Acta 1778: 1814-1838.
-
(2008)
Biochim Biophys Acta
, vol.1778
, pp. 1814-1838
-
-
Bay, D.C.1
Rommens, K.L.2
Turner, R.J.3
-
5
-
-
75149147505
-
Use of Drosophila deoxynucleoside kinase to study mechanism of toxicity and mutagenicity of deoxycytidine analogs in Escherichia coli
-
Betham B, Shalhout S, Marquez VE & Bhagwat AS (2010) Use of Drosophila deoxynucleoside kinase to study mechanism of toxicity and mutagenicity of deoxycytidine analogs in Escherichia coli. DNA Repair (Amst) 9: 153-160.
-
(2010)
DNA Repair (Amst)
, vol.9
, pp. 153-160
-
-
Betham, B.1
Shalhout, S.2
Marquez, V.E.3
Bhagwat, A.S.4
-
6
-
-
0036016788
-
Cooperation and competition in mismatch repair: very short-patch repair and methyl-directed mismatch repair in Escherichia coli
-
Bhagwat AS & Lieb M (2002) Cooperation and competition in mismatch repair: very short-patch repair and methyl-directed mismatch repair in Escherichia coli. Mol Microbiol 44: 1421-1428.
-
(2002)
Mol Microbiol
, vol.44
, pp. 1421-1428
-
-
Bhagwat, A.S.1
Lieb, M.2
-
7
-
-
0023202478
-
Genetic analysis of the 5-azacytidine sensitivity of Escherichia coli K-12
-
Bhagwat AS & Roberts RJ (1987) Genetic analysis of the 5-azacytidine sensitivity of Escherichia coli K-12. J Bacteriol 169: 1537-1546.
-
(1987)
J Bacteriol
, vol.169
, pp. 1537-1546
-
-
Bhagwat, A.S.1
Roberts, R.J.2
-
8
-
-
0036227922
-
Overexpression of the Escherichia coli sugE gene confers resistance to a narrow range of quaternary ammonium compounds
-
Chung YJ & Saier MH Jr (2002) Overexpression of the Escherichia coli sugE gene confers resistance to a narrow range of quaternary ammonium compounds. J Bacteriol 184: 2543-2545.
-
(2002)
J Bacteriol
, vol.184
, pp. 2543-2545
-
-
Chung, Y.J.1
Saier Jr., M.H.2
-
9
-
-
84875460657
-
sugE: a gene involved in tributyltin (TBT) resistance of Aeromonas molluscorum Av27
-
Cruz A, Micaelo N, Felix V, Song JY, Kitamura S, Suzuki S & Mendo S (2013) sugE: a gene involved in tributyltin (TBT) resistance of Aeromonas molluscorum Av27. J Gen Appl Microbiol 59: 39-47.
-
(2013)
J Gen Appl Microbiol
, vol.59
, pp. 39-47
-
-
Cruz, A.1
Micaelo, N.2
Felix, V.3
Song, J.Y.4
Kitamura, S.5
Suzuki, S.6
Mendo, S.7
-
10
-
-
84877947173
-
Characterization of undermethylated sites in Vibrio cholerae
-
Dalia AB, Lazinski DW & Camilli A (2013) Characterization of undermethylated sites in Vibrio cholerae. J Bacteriol 195: 2389-2399.
-
(2013)
J Bacteriol
, vol.195
, pp. 2389-2399
-
-
Dalia, A.B.1
Lazinski, D.W.2
Camilli, A.3
-
11
-
-
0027410577
-
A novel multicopy suppressor of a groEL mutation includes two nested open reading frames transcribed from different promoters
-
Greener T, Govezensky D & Zamir A (1993) A novel multicopy suppressor of a groEL mutation includes two nested open reading frames transcribed from different promoters. EMBO J 12: 889-896.
-
(1993)
EMBO J
, vol.12
, pp. 889-896
-
-
Greener, T.1
Govezensky, D.2
Zamir, A.3
-
12
-
-
0015783941
-
Isolation of a mutant of Escherichia coli defective in cytosine-specific deoxyribonucleic acid methylase activity and in partial protection of bacteriophage lambda against restriction by cells containing the N-3 drug-resistance factor
-
Hattman S, Schlagman S & Cousens L (1973) Isolation of a mutant of Escherichia coli defective in cytosine-specific deoxyribonucleic acid methylase activity and in partial protection of bacteriophage lambda against restriction by cells containing the N-3 drug-resistance factor. J Bacteriol 115: 1103-1107.
-
(1973)
J Bacteriol
, vol.115
, pp. 1103-1107
-
-
Hattman, S.1
Schlagman, S.2
Cousens, L.3
-
13
-
-
79960323776
-
SugE, a new member of the SMR family of transporters, contributes to antimicrobial resistance in Enterobacter cloacae
-
He GX, Zhang C, Crow RR, Thorpe C, Chen H, Kumar S, Tsuchiya T & Varela MF (2011) SugE, a new member of the SMR family of transporters, contributes to antimicrobial resistance in Enterobacter cloacae. Antimicrob Agents Chemother 55: 3954-3957.
-
(2011)
Antimicrob Agents Chemother
, vol.55
, pp. 3954-3957
-
-
He, G.X.1
Zhang, C.2
Crow, R.R.3
Thorpe, C.4
Chen, H.5
Kumar, S.6
Tsuchiya, T.7
Varela, M.F.8
-
14
-
-
0026094872
-
The vsr gene product of E. coli K-12 is a strand- and sequence-specific DNA mismatch endonuclease
-
Hennecke F, Kolmar H, Brundl K & Fritz HJ (1991) The vsr gene product of E. coli K-12 is a strand- and sequence-specific DNA mismatch endonuclease. Nature 353: 776-778.
-
(1991)
Nature
, vol.353
, pp. 776-778
-
-
Hennecke, F.1
Kolmar, H.2
Brundl, K.3
Fritz, H.J.4
-
15
-
-
0041355334
-
The human Dnmt2 has residual DNA-(cytosine-C5) methyltransferase activity
-
Hermann A, Schmitt S & Jeltsch A (2003) The human Dnmt2 has residual DNA-(cytosine-C5) methyltransferase activity. J Biol Chem 278: 31717-31721.
-
(2003)
J Biol Chem
, vol.278
, pp. 31717-31721
-
-
Hermann, A.1
Schmitt, S.2
Jeltsch, A.3
-
16
-
-
0037007175
-
Beyond Watson and Crick: DNA methylation and molecular enzymology of DNA methyltransferases
-
Jeltsch A (2002) Beyond Watson and Crick: DNA methylation and molecular enzymology of DNA methyltransferases. ChemBioChem 3: 274-293.
-
(2002)
ChemBioChem
, vol.3
, pp. 274-293
-
-
Jeltsch, A.1
-
17
-
-
84863314385
-
Genomics of DNA cytosine methylation in Escherichia coli reveals its role in stationary phase transcription
-
Kahramanoglou C, Prieto AI, Khedkar S, Haase B, Gupta A, Benes V, Fraser GM, Luscombe NM & Seshasayee AS (2012) Genomics of DNA cytosine methylation in Escherichia coli reveals its role in stationary phase transcription. Nat Commun 3: 886.
-
(2012)
Nat Commun
, vol.3
, pp. 886
-
-
Kahramanoglou, C.1
Prieto, A.I.2
Khedkar, S.3
Haase, B.4
Gupta, A.5
Benes, V.6
Fraser, G.M.7
Luscombe, N.M.8
Seshasayee, A.S.9
-
18
-
-
0025754787
-
Spontaneous mutation at a 5-methylcytosine hotspot is prevented by very short patch (VSP) mismatch repair
-
Lieb M (1991) Spontaneous mutation at a 5-methylcytosine hotspot is prevented by very short patch (VSP) mismatch repair. Genetics 128: 23-27.
-
(1991)
Genetics
, vol.128
, pp. 23-27
-
-
Lieb, M.1
-
19
-
-
0029925165
-
Very short patch repair: reducing the cost of cytosine methylation
-
Lieb M & Bhagwat AS (1996) Very short patch repair: reducing the cost of cytosine methylation. Mol Microbiol 20: 467-473.
-
(1996)
Mol Microbiol
, vol.20
, pp. 467-473
-
-
Lieb, M.1
Bhagwat, A.S.2
-
20
-
-
0035710746
-
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
-
Livak KJ & Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25: 402-408.
-
(2001)
Methods
, vol.25
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
21
-
-
84856451859
-
DNA methylation
-
Böck A, Curtiss R III, Kaper J eds). ASM Press, Washington, DC.
-
Marinus M, Lobner-Olesen A (2009) DNA methylation. EcoSal - Escherichia coli and Salmonella: Cellular and Molecular Biology, (Böck A, Curtiss R III, Kaper J et al. eds), pp. 1-88. ASM Press, Washington, DC.
-
(2009)
EcoSal - Escherichia coli and Salmonella: Cellular and Molecular Biology
, pp. 1-88
-
-
Marinus, M.1
Lobner-Olesen, A.2
-
22
-
-
84856473209
-
Conservation of Dcm-mediated cytosine DNA methylation in Escherichia coli
-
Militello KT, Simon RD, Qureshi M, Maines R, VanHorne ML, Hennick SM, Jayakar SK & Pounder S (2012) Conservation of Dcm-mediated cytosine DNA methylation in Escherichia coli. FEMS Microbiol Lett 328: 78-85.
-
(2012)
FEMS Microbiol Lett
, vol.328
, pp. 78-85
-
-
Militello, K.T.1
Simon, R.D.2
Qureshi, M.3
Maines, R.4
VanHorne, M.L.5
Hennick, S.M.6
Jayakar, S.K.7
Pounder, S.8
-
23
-
-
0034817367
-
Analysis of a complete library of putative drug transporter genes in Escherichia coli
-
Nishino K & Yamaguchi A (2001) Analysis of a complete library of putative drug transporter genes in Escherichia coli. J Bacteriol 183: 5803-5812.
-
(2001)
J Bacteriol
, vol.183
, pp. 5803-5812
-
-
Nishino, K.1
Yamaguchi, A.2
-
24
-
-
25144440957
-
A dichotomous epigenetic mechanism governs expression of the LlaJI restriction/modification system
-
O'Driscoll J, Fitzgerald GF & van Sinderen D (2005) A dichotomous epigenetic mechanism governs expression of the LlaJI restriction/modification system. Mol Microbiol 57: 1532-1544.
-
(2005)
Mol Microbiol
, vol.57
, pp. 1532-1544
-
-
O'Driscoll, J.1
Fitzgerald, G.F.2
van Sinderen, D.3
-
25
-
-
40449108318
-
Maintenance forced by a restriction-modification system can be modulated by a region in its modification enzyme not essential for methyltransferase activity
-
Ohno S, Handa N, Watanabe-Matsui M, Takahashi N & Kobayashi I (2008) Maintenance forced by a restriction-modification system can be modulated by a region in its modification enzyme not essential for methyltransferase activity. J Bacteriol 190: 2039-2049.
-
(2008)
J Bacteriol
, vol.190
, pp. 2039-2049
-
-
Ohno, S.1
Handa, N.2
Watanabe-Matsui, M.3
Takahashi, N.4
Kobayashi, I.5
-
26
-
-
84866562631
-
Reconstitution of the very short patch repair pathway from Escherichia coli
-
Robertson AB & Matson SW (2012) Reconstitution of the very short patch repair pathway from Escherichia coli. J Biol Chem 287: 32953-32966.
-
(2012)
J Biol Chem
, vol.287
, pp. 32953-32966
-
-
Robertson, A.B.1
Matson, S.W.2
-
27
-
-
77955884641
-
RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage
-
Schaefer M, Pollex T, Hanna K, Tuorto F, Meusburger M, Helm M & Lyko F (2010) RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage. Genes Dev 24: 1590-1595.
-
(2010)
Genes Dev
, vol.24
, pp. 1590-1595
-
-
Schaefer, M.1
Pollex, T.2
Hanna, K.3
Tuorto, F.4
Meusburger, M.5
Helm, M.6
Lyko, F.7
-
28
-
-
25144491188
-
SMR proteins SugE and EmrE bind ligand with similar affinity and stoichiometry
-
Sikora CW & Turner RJ (2005) SMR proteins SugE and EmrE bind ligand with similar affinity and stoichiometry. Biochem Biophys Res Commun 335: 105-111.
-
(2005)
Biochem Biophys Res Commun
, vol.335
, pp. 105-111
-
-
Sikora, C.W.1
Turner, R.J.2
-
29
-
-
0025327968
-
A gene required for very short patch repair in Escherichia coli is adjacent to the DNA cytosine methylase gene
-
Sohail A, Lieb M, Dar M & Bhagwat AS (1990) A gene required for very short patch repair in Escherichia coli is adjacent to the DNA cytosine methylase gene. J Bacteriol 172: 4214-4221.
-
(1990)
J Bacteriol
, vol.172
, pp. 4214-4221
-
-
Sohail, A.1
Lieb, M.2
Dar, M.3
Bhagwat, A.S.4
-
30
-
-
0028641158
-
Regulation of EcoRII methyltransferase: effect of mutations on gene expression and in vitro binding to the promoter region
-
Som S & Friedman S (1994) Regulation of EcoRII methyltransferase: effect of mutations on gene expression and in vitro binding to the promoter region. Nucleic Acids Res 22: 5347-5353.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 5347-5353
-
-
Som, S.1
Friedman, S.2
-
31
-
-
0344495427
-
Mutagenesis of SugE, a small multidrug resistance protein
-
Son MS, Del Castilho C, Duncalf KA, Carney D, Weiner JH & Turner RJ (2003) Mutagenesis of SugE, a small multidrug resistance protein. Biochem Biophys Res Commun 312: 914-921.
-
(2003)
Biochem Biophys Res Commun
, vol.312
, pp. 914-921
-
-
Son, M.S.1
Del Castilho, C.2
Duncalf, K.A.3
Carney, D.4
Weiner, J.H.5
Turner, R.J.6
-
32
-
-
0035086501
-
Antibiotic susceptibility profiles of Escherichia coli strains lacking multidrug efflux pump genes
-
Sulavik MC, Houseweart C, Cramer C et al. (2001) Antibiotic susceptibility profiles of Escherichia coli strains lacking multidrug efflux pump genes. Antimicrob Agents Chemother 45: 1126-1136.
-
(2001)
Antimicrob Agents Chemother
, vol.45
, pp. 1126-1136
-
-
Sulavik, M.C.1
Houseweart, C.2
Cramer, C.3
-
33
-
-
0036842035
-
A DNA methyltransferase can protect the genome from postdisturbance attack by a restriction-modification gene complex
-
Takahashi N, Naito Y, Handa N & Kobayashi I (2002) A DNA methyltransferase can protect the genome from postdisturbance attack by a restriction-modification gene complex. J Bacteriol 184: 6100-6108.
-
(2002)
J Bacteriol
, vol.184
, pp. 6100-6108
-
-
Takahashi, N.1
Naito, Y.2
Handa, N.3
Kobayashi, I.4
-
34
-
-
39449086721
-
Agar and broth dilution methods to determine the minimal inhibitory concentration (MIC) of antimicrobial substances
-
Wiegand I, Hilpert K & Hancock RE (2008) Agar and broth dilution methods to determine the minimal inhibitory concentration (MIC) of antimicrobial substances. Nat Protoc 3: 163-175.
-
(2008)
Nat Protoc
, vol.3
, pp. 163-175
-
-
Wiegand, I.1
Hilpert, K.2
Hancock, R.E.3
-
35
-
-
77952355762
-
Genome-wide evolutionary analysis of eukaryotic DNA methylation
-
Zemach A, McDaniel IE, Silva P & Zilberman D (2010) Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science 328: 916-919.
-
(2010)
Science
, vol.328
, pp. 916-919
-
-
Zemach, A.1
McDaniel, I.E.2
Silva, P.3
Zilberman, D.4
|