-
1
-
-
55449127483
-
Transmission of Vibrio cholerae is antagonized by lytic phage and entry into the aquatic environment
-
doi:10.1371/journal.ppat.1000187
-
Nelson EJ, Chowdhury A, Flynn J, Schild S, Bourassa L, Shao Y, LaRocque RC, Calderwood SB, Qadri F, Camilli A. 2008. Transmission of Vibrio cholerae is antagonized by lytic phage and entry into the aquatic environment. PLoS Pathog. 4:e1000187. doi:10.1371/journal.ppat.1000187.
-
(2008)
PLoS Pathog.
, vol.4
-
-
Nelson, E.J.1
Chowdhury, A.2
Flynn, J.3
Schild, S.4
Bourassa, L.5
Shao, Y.6
LaRocque, R.C.7
Calderwood, S.B.8
Qadri, F.9
Camilli, A.10
-
2
-
-
33749246561
-
Epigenetic gene regulation in the bacterial world
-
Casadesus J, Low D. 2006. Epigenetic gene regulation in the bacterial world. Microbiol. Mol. Biol. Rev. 70:830-856.
-
(2006)
Microbiol. Mol. Biol. Rev.
, vol.70
, pp. 830-856
-
-
Casadesus, J.1
Low, D.2
-
3
-
-
0035189042
-
Roles of DNA adenine methylation in regulating bacterial gene expression and virulence
-
Low DA, Weyand NJ, Mahan MJ. 2001. Roles of DNA adenine methylation in regulating bacterial gene expression and virulence. Infect. Immun. 69:7197-7204.
-
(2001)
Infect. Immun.
, vol.69
, pp. 7197-7204
-
-
Low, D.A.1
Weyand, N.J.2
Mahan, M.J.3
-
4
-
-
0026551302
-
The Escherichia coli chromosome contains specific, unmethylated dam and dcm sites
-
Ringquist S, Smith CL. 1992. The Escherichia coli chromosome contains specific, unmethylated dam and dcm sites. Proc. Natl. Acad. Sci. U. S. A. 89:4539-4543.
-
(1992)
Proc. Natl. Acad. Sci. U. S. A.
, vol.89
, pp. 4539-4543
-
-
Ringquist, S.1
Smith, C.L.2
-
5
-
-
0031837058
-
Quantitative whole-genome analysis of DNA-protein interactions by in vivo methylase protection in E
-
Tavazoie S, Church GM. 1998. Quantitative whole-genome analysis of DNA-protein interactions by in vivo methylase protection in E. coli. Nat. Biotechnol. 16:566-571.
-
(1998)
coli. Nat. Biotechnol.
, vol.16
, pp. 566-571
-
-
Tavazoie, S.1
Church, G.M.2
-
6
-
-
0042329503
-
Distinct replication requirements for the two Vibrio cholerae chromosomes
-
Egan ES, Waldor MK. 2003. Distinct replication requirements for the two Vibrio cholerae chromosomes. Cell 114:521-530.
-
(2003)
Cell
, vol.114
, pp. 521-530
-
-
Egan, E.S.1
Waldor, M.K.2
-
7
-
-
33645550078
-
An orphan DNA (cytosine-5-)- methyltransferase in Vibrio cholerae
-
Banerjee S, Chowdhury R. 2006. An orphan DNA (cytosine-5-)- methyltransferase in Vibrio cholerae. Microbiology 152:1055-1062.
-
(2006)
Microbiology
, vol.152
, pp. 1055-1062
-
-
Banerjee, S.1
Chowdhury, R.2
-
8
-
-
0029562634
-
Characterization of Vibrio cholerae bacteriophage K139 and use of a novel mini-transposon to identify a phageencoded virulence factor
-
Reidl J, Mekalanos JJ. 1995. Characterization of Vibrio cholerae bacteriophage K139 and use of a novel mini-transposon to identify a phageencoded virulence factor. Mol. Microbiol. 18:685-701.
-
(1995)
Mol. Microbiol.
, vol.18
, pp. 685-701
-
-
Reidl, J.1
Mekalanos, J.J.2
-
9
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
doi:10.1186/gb-2009-10-3-r25
-
Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10:R25. doi:10.1186/gb-2009-10-3-r25.
-
(2009)
Genome Biol.
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
10
-
-
33846107211
-
Evaluation of a quantitative DNA methylation analysis technique using methylationsensitive/ dependent restriction enzymes and real-time PCR
-
Oakes CC, La Salle S, Robaire B, Trasler JM. 2006. Evaluation of a quantitative DNA methylation analysis technique using methylationsensitive/ dependent restriction enzymes and real-time PCR. Epigenetics 1:146-152.
-
(2006)
Epigenetics
, vol.1
, pp. 146-152
-
-
Oakes, C.C.1
La Salle, S.2
Robaire, B.3
Trasler, J.M.4
-
11
-
-
77956885050
-
Genetic manipulation of Vibrio cholerae by combining natural transformation with FLP recombination
-
De Souza Silva O, Blokesch M. 2010. Genetic manipulation of Vibrio cholerae by combining natural transformation with FLP recombination. Plasmid 64:186-195.
-
(2010)
Plasmid
, vol.64
, pp. 186-195
-
-
De Souza Silva, O.1
Blokesch, M.2
-
12
-
-
29144506940
-
Chitin induces natural competence in Vibrio cholerae
-
Meibom KL, Blokesch M, Dolganov NA, Wu CY, Schoolnik GK. 2005. Chitin induces natural competence in Vibrio cholerae. Science 310:1824-1827.
-
(2005)
Science
, vol.310
, pp. 1824-1827
-
-
Meibom, K.L.1
Blokesch, M.2
Dolganov, N.A.3
Wu, C.Y.4
Schoolnik, G.K.5
-
13
-
-
77956622815
-
PhoB regulates both environmental and virulence gene expression in Vibrio cholerae
-
Pratt JT, Ismail AM, Camilli A. 2010. PhoB regulates both environmental and virulence gene expression in Vibrio cholerae. Mol. Microbiol. 77: 1595-1605.
-
(2010)
Mol. Microbiol.
, vol.77
, pp. 1595-1605
-
-
Pratt, J.T.1
Ismail, A.M.2
Camilli, A.3
-
14
-
-
65549107163
-
Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver
-
Brunner AL, Johnson DS, Kim SW, Valouev A, Reddy TE, Neff NF, Anton E, Medina C, Nguyen L, Chiao E, Oyolu CB, Schroth GP, Absher DM, Baker JC, Myers RM. 2009. Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver. Genome Res. 19:1044-1056.
-
(2009)
Genome Res.
, vol.19
, pp. 1044-1056
-
-
Brunner, A.L.1
Johnson, D.S.2
Kim, S.W.3
Valouev, A.4
Reddy, T.E.5
Neff, N.F.6
Anton, E.7
Medina, C.8
Nguyen, L.9
Chiao, E.10
Oyolu, C.B.11
Schroth, G.P.12
Absher, D.M.13
Baker, J.C.14
Myers, R.M.15
-
15
-
-
79958805159
-
Statistical quantification of methylation levels by next-generation sequencing
-
doi:10.1371/journal.pone.0021034
-
Wu G, Yi N, Absher D, Zhi D. 2011. Statistical quantification of methylation levels by next-generation sequencing. PLoS One 6:e21034. doi:10.1371/journal.pone.0021034.
-
(2011)
PLoS One
, vol.6
-
-
Wu, G.1
Yi, N.2
Absher, D.3
Zhi, D.4
-
16
-
-
84874370010
-
Homopolymer tail-mediated ligation PCR: a streamlined and highly efficient method for DNA cloning and library construction
-
Lazinski DW, Camilli A. 2013. Homopolymer tail-mediated ligation PCR: a streamlined and highly efficient method for DNA cloning and library construction. Biotechniques 54:25-34.
-
(2013)
Biotechniques
, vol.54
, pp. 25-34
-
-
Lazinski, D.W.1
Camilli, A.2
-
17
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
-
2006.0008. doi:10.1038/msb4100050
-
Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H. 2006. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2:2006.0008. doi:10.1038/msb4100050.
-
(2006)
Mol. Syst. Biol.
, vol.2
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
18
-
-
0030851496
-
Reciprocal regulation of the early promoter region of bacteriophage HP1 by the Cox and Cl proteins
-
Esposito D, Wilson JC, Scocca JJ. 1997. Reciprocal regulation of the early promoter region of bacteriophage HP1 by the Cox and Cl proteins. Virology 234:267-276.
-
(1997)
Virology
, vol.234
, pp. 267-276
-
-
Esposito, D.1
Wilson, J.C.2
Scocca, J.J.3
-
19
-
-
69049084604
-
Sialic acid catabolism confers a competitive advantage to pathogenic Vibrio cholerae in the mouse intestine
-
Almagro-Moreno S, Boyd EF. 2009. Sialic acid catabolism confers a competitive advantage to pathogenic Vibrio cholerae in the mouse intestine. Infect. Immun. 77:3807-3816.
-
(2009)
Infect. Immun.
, vol.77
, pp. 3807-3816
-
-
Almagro-Moreno, S.1
Boyd, E.F.2
-
20
-
-
0035168497
-
Haem utilization in Vibrio cholerae involves multiple TonB-dependent haem receptors
-
Mey AR, Payne SM. 2001. Haem utilization in Vibrio cholerae involves multiple TonB-dependent haem receptors. Mol. Microbiol. 42:835-849.
-
(2001)
Mol. Microbiol.
, vol.42
, pp. 835-849
-
-
Mey, A.R.1
Payne, S.M.2
-
21
-
-
79960947902
-
An epigenetic switch involving overlapping fur and DNA methylation optimizes expression of a type VI secretion gene cluster
-
doi:10.1371/journal.pgen.1002205
-
Brunet YR, Bernard CS, Gavioli M, Lloubes R, Cascales E. 2011. An epigenetic switch involving overlapping fur and DNA methylation optimizes expression of a type VI secretion gene cluster. PLoS Genet. 7:e1002205. doi:10.1371/journal.pgen.1002205.
-
(2011)
PLoS Genet.
, vol.7
-
-
Brunet, Y.R.1
Bernard, C.S.2
Gavioli, M.3
Lloubes, R.4
Cascales, E.5
-
22
-
-
0028089165
-
Methylation patterns in pap regulatory DNA control pyelonephritis-associated pili phase variation in E
-
Braaten BA, Nou X, Kaltenbach LS, Low DA. 1994. Methylation patterns in pap regulatory DNA control pyelonephritis-associated pili phase variation in E. coli. Cell 76:577-588.
-
(1994)
coli. Cell
, vol.76
, pp. 577-588
-
-
Braaten, B.A.1
Nou, X.2
Kaltenbach, L.S.3
Low, D.A.4
-
23
-
-
0036837766
-
Recognition of DNA by Fur: a reinterpretation of the Fur box consensus sequence
-
Baichoo N, Helmann JD. 2002. Recognition of DNA by Fur: a reinterpretation of the Fur box consensus sequence. J. Bacteriol. 184:5826-5832.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 5826-5832
-
-
Baichoo, N.1
Helmann, J.D.2
-
24
-
-
34249063691
-
Regulation of the chitobiose-phosphotransferase system in Vibrio cholerae
-
Berg T, Schild S, Reidl J. 2007. Regulation of the chitobiose-phosphotransferase system in Vibrio cholerae. Arch. Microbiol. 187:433-439.
-
(2007)
Arch. Microbiol.
, vol.187
, pp. 433-439
-
-
Berg, T.1
Schild, S.2
Reidl, J.3
-
25
-
-
36749071435
-
Escherichia coli physiology in Luria-Bertani broth
-
Sezonov G, Joseleau-Petit D, D'Ari R. 2007. Escherichia coli physiology in Luria-Bertani broth. J. Bacteriol. 189:8746-8749.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 8746-8749
-
-
Sezonov, G.1
Joseleau-Petit, D.2
D'Ari, R.3
-
26
-
-
0033025239
-
Ferritin mutants of Escherichia coli are iron deficient and growth impaired, and fur mutants are iron deficient
-
Abdul-Tehrani H, Hudson AJ, Chang YS, Timms AR, Hawkins C, Williams JM, Harrison PM, Guest JR, Andrews SC. 1999. Ferritin mutants of Escherichia coli are iron deficient and growth impaired, and fur mutants are iron deficient. J. Bacteriol. 181:1415-1428.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 1415-1428
-
-
Abdul-Tehrani, H.1
Hudson, A.J.2
Chang, Y.S.3
Timms, A.R.4
Hawkins, C.5
Williams, J.M.6
Harrison, P.M.7
Guest, J.R.8
Andrews, S.C.9
-
27
-
-
0026073299
-
Evidence for a methylation- blocking factor (mbf) locus involved in pap pilus expression and phase variation in Escherichia coli
-
Braaten BA, Blyn LB, Skinner BS, Low DA. 1991. Evidence for a methylation- blocking factor (mbf) locus involved in pap pilus expression and phase variation in Escherichia coli. J. Bacteriol. 173:1789-1800.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 1789-1800
-
-
Braaten, B.A.1
Blyn, L.B.2
Skinner, B.S.3
Low, D.A.4
-
28
-
-
0020698253
-
Contribution of adhesion to bacterial persistence in the mouse urinary tract
-
Hagberg L, Hull R, Hull S, Falkow S, Freter R, Svanborg Eden C. 1983. Contribution of adhesion to bacterial persistence in the mouse urinary tract. Infect. Immun. 40:265-272.
-
(1983)
Infect. Immun.
, vol.40
, pp. 265-272
-
-
Hagberg, L.1
Hull, R.2
Hull, S.3
Falkow, S.4
Freter, R.5
Svanborg Eden, C.6
-
29
-
-
0021435558
-
Genes of pyelonephritogenic E. coli required for digalactoside-specific agglutination of human cells
-
Lindberg FP, Lund B, Normark S. 1984. Genes of pyelonephritogenic E. coli required for digalactoside-specific agglutination of human cells. EMBO J. 3:1167-1173.
-
(1984)
EMBO J.
, vol.3
, pp. 1167-1173
-
-
Lindberg, F.P.1
Lund, B.2
Normark, S.3
-
30
-
-
77949663046
-
Establishing and maintaining sequestration of Dam target sites for phase variation of agn43 in Escherichia coli
-
Kaminska R, van der Woude MW. 2010. Establishing and maintaining sequestration of Dam target sites for phase variation of agn43 in Escherichia coli. J. Bacteriol. 192:1937-1945.
-
(2010)
J. Bacteriol.
, vol.192
, pp. 1937-1945
-
-
Kaminska, R.1
van der Woude, M.W.2
-
31
-
-
0015873924
-
Isolation of deoxyribonucleic acid methylase mutants of Escherichia coli K-12
-
Marinus MG, Morris NR. 1973. Isolation of deoxyribonucleic acid methylase mutants of Escherichia coli K-12. J. Bacteriol. 114:1143-1150.
-
(1973)
J. Bacteriol.
, vol.114
, pp. 1143-1150
-
-
Marinus, M.G.1
Morris, N.R.2
-
32
-
-
0345551953
-
Characterization of the major control region of Vibrio cholerae bacteriophage K139: immunity, exclusion, and integration
-
Nesper J, Blass J, Fountoulakis M, Reidl J. 1999. Characterization of the major control region of Vibrio cholerae bacteriophage K139: immunity, exclusion, and integration. J. Bacteriol. 181:2902-2913.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 2902-2913
-
-
Nesper, J.1
Blass, J.2
Fountoulakis, M.3
Reidl, J.4
|