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Volumn 6, Issue 12, 2013, Pages 283-287

BIOSPEAN: A freeware tool for processing spectra from MALDI intact cell/spore mass spectrometry

Author keywords

Comparison; Database search; Mass spectrometry; Microorganisms; Peak; Software

Indexed keywords

ARTICLE; BIOSPEAN; CLINICAL RESEARCH; COMPUTER PROGRAM; INFORMATION PROCESSING; MALDI INTACT CELL SPORE MASS SPECTROMETRY; MASS SPECTROMETRY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MEASUREMENT PRECISION; PROTEIN ANALYSIS; SCORING SYSTEM; TEMPERATURE; WEB BROWSER;

EID: 84891715928     PISSN: None     EISSN: 0974276X     Source Type: Journal    
DOI: 10.4172/jpb.1000292     Document Type: Article
Times cited : (13)

References (19)
  • 1
    • 84891705896 scopus 로고    scopus 로고
    • Mass spectrometry in biology
    • In:, John Wiley & Sons Ltd, Chichester
    • Yates JR (2001) Mass spectrometry in biology. In: Encyclopedia of Life Sciences. John Wiley & Sons Ltd, Chichester.
    • (2001) Encyclopedia of Life Sciences
    • Yates, J.R.1
  • 2
    • 68949157005 scopus 로고    scopus 로고
    • Mass spectrometry: From proteomics to metabolomics and lipidomics
    • Griffiths WJ, Wang Y (2009) Mass spectrometry: from proteomics to metabolomics and lipidomics. Chem Soc Rev 38: 1882-1896.
    • (2009) Chem Soc Rev , vol.38 , pp. 1882-1896
    • Griffiths, W.J.1    Wang, Y.2
  • 3
    • 78650887881 scopus 로고    scopus 로고
    • MALDITOF mass spectrometry tools for bacterial identification in clinical microbiology laboratory
    • Carbonnelle E, Mesquita C, Bille E, Day N, Dauphin B, et al. (2011) MALDITOF mass spectrometry tools for bacterial identification in clinical microbiology laboratory. Clin Biochem 44: 104-109.
    • (2011) Clin Biochem , vol.44 , pp. 104-109
    • Carbonnelle, E.1    Mesquita, C.2    Bille, E.3    Day, N.4    Dauphin, B.5
  • 4
    • 77952980825 scopus 로고    scopus 로고
    • mMass 3: A crossplatform software environment for precise analysis of mass spectrometric data
    • Strohalm M, Kavan D, Novák P, Volný M, Havlíček V (2010) mMass 3: a crossplatform software environment for precise analysis of mass spectrometric data. Anal Chem 82: 4648-4651.
    • (2010) Anal Chem , vol.82 , pp. 4648-4651
    • Strohalm, M.1    Kavan, D.2    Novák, P.3    Volný, M.4    Havlíček, V.5
  • 5
    • 79952198198 scopus 로고    scopus 로고
    • Evaluation of peak-picking algorithms for protein mass spectrometry
    • Bauer C, Cramer R, Schuchhardt J (2011) Evaluation of peak-picking algorithms for protein mass spectrometry. Methods Mol Biol 696: 341-352.
    • (2011) Methods Mol Biol , vol.696 , pp. 341-352
    • Bauer, C.1    Cramer, R.2    Schuchhardt, J.3
  • 8
    • 84862071299 scopus 로고    scopus 로고
    • Evaluation of the BrukerBiotyper and Vitek MS matrix-assisted laser desorption ionization-time of flight mass spectrometry systems for identification of nonfermenting Gram-negative bacilli isolated from cultures from cystic fibrosis patients
    • Marko DC, Saffert RT, Cunningham SA, Hyman J, Walsh J, et al. (2012) Evaluation of the BrukerBiotyper and Vitek MS matrix-assisted laser desorption ionization-time of flight mass spectrometry systems for identification of nonfermenting Gram-negative bacilli isolated from cultures from cystic fibrosis patients. J Clin Microbiol 50: 2034-2039.
    • (2012) J Clin Microbiol , vol.50 , pp. 2034-2039
    • Marko, D.C.1    Saffert, R.T.2    Cunningham, S.A.3    Hyman, J.4    Walsh, J.5
  • 9
    • 84857067535 scopus 로고    scopus 로고
    • Direct identification of bacteria in urine samples by matrix-assisted laser desorption/ ionization time-of-flight mass spectrometry and relevance of defensins as interfering factors
    • Köhling HL, Bittner A, Müller KD, Buer J, Becker M, et al. (2012) Direct identification of bacteria in urine samples by matrix-assisted laser desorption/ ionization time-of-flight mass spectrometry and relevance of defensins as interfering factors. J Med Microbiol 61: 339-344.
    • (2012) J Med Microbiol , vol.61 , pp. 339-344
    • Köhling, H.L.1    Bittner, A.2    Müller, K.D.3    Buer, J.4    Becker, M.5
  • 10
    • 84876103097 scopus 로고    scopus 로고
    • MALDI-TOF mass spectrometry in the clinical mycology laboratory: Identification of fungi and beyond
    • Posteraro B, De Carolis E, Vella A, Sanguinetti M (2013) MALDI-TOF mass spectrometry in the clinical mycology laboratory: identification of fungi and beyond. Expert Rev Proteomics 10: 151-164.
    • (2013) Expert Rev Proteomics , vol.10 , pp. 151-164
    • Posteraro, B.1    De Carolis, E.2    Vella, A.3    Sanguinetti, M.4
  • 11
    • 84867194361 scopus 로고    scopus 로고
    • Rapid identification of Burkholderia mallei and Burkholderia pseudomallei by intact cell Matrix-assisted Laser Desorption/Ionisation mass spectrometric typing
    • Karger A, Stock R, Ziller M, Elschner MC, Bettin B, et al. (2012) Rapid identification of Burkholderia mallei and Burkholderia pseudomallei by intact cell Matrix-assisted Laser Desorption/Ionisation mass spectrometric typing. BMC Microbiol 12: 229.
    • (2012) BMC Microbiol , vol.12 , pp. 229
    • Karger, A.1    Stock, R.2    Ziller, M.3    Elschner, M.C.4    Bettin, B.5
  • 12
    • 84861553154 scopus 로고    scopus 로고
    • MALDI-TOF MS enables the rapid identification of the major molecular types within the Cryptococcus neoformans/C. gattii species complex
    • Firacative C, Trilles L, Meyer W (2012) MALDI-TOF MS enables the rapid identification of the major molecular types within the Cryptococcus neoformans/C. gattii species complex. PLoS One 7: e37566.
    • (2012) PLoS One , vol.7
    • Firacative, C.1    Trilles, L.2    Meyer, W.3
  • 13
    • 84865453850 scopus 로고    scopus 로고
    • MALDI-TOF MS Andromas strategy for the routine identification of bacteria, mycobacteria, yeasts, Aspergillus spp. and positive blood cultures
    • Bille E, Dauphin B, Leto J, Bougnoux ME, Beretti JL, et al. (2012) MALDI-TOF MS Andromas strategy for the routine identification of bacteria, mycobacteria, yeasts, Aspergillus spp. and positive blood cultures. Clin Microbiol Infect 18: 1117-1125.
    • (2012) Clin Microbiol Infect , vol.18 , pp. 1117-1125
    • Bille, E.1    Dauphin, B.2    Leto, J.3    Bougnoux, M.E.4    Beretti, J.L.5
  • 14
    • 4444357465 scopus 로고    scopus 로고
    • Compilation of a MALDI-TOF mass spectral database for the rapid screening and characterisation of bacteria implicated in human infectious diseases
    • Keys CJ, Dare DJ, Sutton H, Wells G, Lunt M, et al. (2004) Compilation of a MALDI-TOF mass spectral database for the rapid screening and characterisation of bacteria implicated in human infectious diseases. Infect Genet Evol 4: 221-242.
    • (2004) Infect Genet Evol , vol.4 , pp. 221-242
    • Keys, C.J.1    Dare, D.J.2    Sutton, H.3    Wells, G.4    Lunt, M.5
  • 16
    • 84886950647 scopus 로고    scopus 로고
    • Elucidating heterogeneity of IgA1 hinge-region O-glycosylation by use of MALDI-TOF/TOF mass spectrometry: Role of cysteine alkylation during sample processing
    • Franc V, Rehulka P, Raus M, Stulík J, Novak J, et al. (2013) Elucidating heterogeneity of IgA1 hinge-region O-glycosylation by use of MALDI-TOF/TOF mass spectrometry: Role of cysteine alkylation during sample processing. J Proteomics 92: 299-312.
    • (2013) J Proteomics , vol.92 , pp. 299-312
    • Franc, V.1    Rehulka, P.2    Raus, M.3    Stulík, J.4    Novak, J.5
  • 18
    • 84874059447 scopus 로고    scopus 로고
    • Development of a clinically comprehensive database and a simple procedure for identification of molds from solid media by matrix-assisted laser desorption ionization-time of flight mass spectrometry
    • Lau AF, Drake SK, Calhoun LB, Henderson CM, Zelazny AM (2013) Development of a clinically comprehensive database and a simple procedure for identification of molds from solid media by matrix-assisted laser desorption ionization-time of flight mass spectrometry. J Clin Microbiol 51: 828-834.
    • (2013) J Clin Microbiol , vol.51 , pp. 828-834
    • Lau, A.F.1    Drake, S.K.2    Calhoun, L.B.3    Henderson, C.M.4    Zelazny, A.M.5
  • 19
    • 79955376439 scopus 로고    scopus 로고
    • Matrixassisted laser desorption ionization time-of-flight mass spectrometry for fast and accurate identification of clinically relevant Aspergillus species
    • Alanio A, Beretti JL, Dauphin B, Mellado E, Quesne G, et al. (2011) Matrixassisted laser desorption ionization time-of-flight mass spectrometry for fast and accurate identification of clinically relevant Aspergillus species. Clin Microbiol Infect 17: 750-755.
    • (2011) Clin Microbiol Infect , vol.17 , pp. 750-755
    • Alanio, A.1    Beretti, J.L.2    Dauphin, B.3    Mellado, E.4    Quesne, G.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.