-
1
-
-
49749120982
-
A novel wavelet-based thresholding method for the pre-processing of mass spectrometr y data that accounts for heterogeneous noise
-
Kwon D, Vannucci M, Song JJ, Jeong J, Pfeiffer RM (2008) A novel wavelet-based thresholding method for the pre-processing of mass spectrometr y data that accounts for heterogeneous noise. Proteomics 8: 3019–3029
-
(2008)
Proteomics
, vol.8
, pp. 3019-3029
-
-
Kwon, D.1
Vannucci, M.2
Song, J.J.3
Jeong, J.4
Pfeiffer, R.M.5
-
2
-
-
0042553279
-
Smoothing and differentiation of data by simplified least squares procedures
-
Savitzky A, Golay MJE (1964) Smoothing and differentiation of data by simplified least squares procedures. Anal Chem 36(8):1627–1639
-
(1964)
Anal Chem
, vol.36
, Issue.8
, pp. 1627-1639
-
-
Savitzky, A.1
Golay, M.J.E.2
-
3
-
-
18744411077
-
Improved peak detection and quantification of mass spectrometry data acquired from surface-enhanced laser desorption and ionization by denoising spectra with the undecimated discrete wavelet transform
-
Coombes KR, Tsavachidis S, Morris JS, Baggerly KA, Hung MC, Kuerer HM (2005) Improved peak detection and quantification of mass spectrometry data acquired from surface-enhanced laser desorption and ionization by denoising spectra with the undecimated discrete wavelet transform. Proteomics 5:4107–4117
-
(2005)
Proteomics
, vol.5
, pp. 4107-4117
-
-
Coombes, K.R.1
Tsavachidis, S.2
Morris, J.S.3
Baggerly, K.A.4
Hung, M.C.5
Kuerer, H.M.6
-
5
-
-
85053520810
-
Local regression models
-
Chambers JM, Hastie T, Wadsworth & Brooks/Cole, Pacific Grove, CA
-
Cleveland WS, Grosse E, Shyu WM (1992) Local regression models. In: Chambers JM, Hastie T (eds) Statistical models in S. Wadsworth & Brooks/Cole, Pacific Grove, CA, pp 309–376
-
(1992)
Statistical Models in S
, pp. 309-376
-
-
Cleveland, W.S.1
Grosse, E.2
Shyu, W.M.3
-
6
-
-
39049193622
-
High-accuracy peak picking of proteomics data using wavelet techniques
-
Lange E, Gropl C, Reinert K, Kohlbacher O, Hildebrandt A (2006) High-accuracy peak picking of proteomics data using wavelet techniques. Pac Symp Biocomput 11:243–254
-
(2006)
Pac Symp Biocomput
, vol.11
, pp. 243-254
-
-
Lange, E.1
Gropl, C.2
Reinert, K.3
Kohlbacher, O.4
Hildebrandt, A.5
-
7
-
-
33748659203
-
Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching
-
Du P, Kibbe WA, Lin SM (2006) Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching. Bioinformatics 22: 2059–2065
-
(2006)
Bioinformatics
, vol.22
, pp. 2059-2065
-
-
Du, P.1
Kibbe, W.A.2
Lin, S.M.3
-
8
-
-
33645756545
-
-
Springer, New York
-
Gentleman R, Carey V, Huber W, Irizarry R, Dudoit S (eds) (2005) Bioinformatics and computational biology solutions using r and bioconductor. Springer, New York
-
(2005)
Bioinformatics and Computational Biology Solutions Using R and Bioconductor
-
-
Gentleman, R.1
Carey, V.2
Huber, W.3
Irizarry, R.4
Dudoit, S.5
-
9
-
-
34147114217
-
LFMPIC: A computational method for the separation of protein MALDI-TOF-MS signals from noise
-
Mantini D, Petrucci F, Pieragostino D, Del Boccio P, Di Nicola M, Di Ilio C, Federici G, Sacchetta P, Comani S, Urbani A (2007) LFMPIC: a computational method for the separation of protein MALDI-TOF-MS signals from noise. BMC Bioinform 8:101
-
(2007)
BMC Bioinform
, vol.8
, pp. 101
-
-
Mantini, D.1
Petrucci, F.2
Pieragostino, D.3
Del Boccio, P.4
Di Nicola, M.5
Di Ilio, C.6
Federici, G.7
Sacchetta, P.8
Comani, S.9
Urbani, A.10
-
10
-
-
33846706581
-
TOPP-the OpenMS proteomics pipeline
-
Kohlbacher O, Reinert K, Gröpl C, Lange E, Pfeifer N, Schulz-Trieglaff O, Sturm M (2007) TOPP-the OpenMS proteomics pipeline. Bioinformatics 23:e191–197
-
(2007)
Bioinformatics
, vol.23
, pp. e191-e197
-
-
Kohlbacher, O.1
Reinert, K.2
Gröpl, C.3
Lange, E.4
Pfeifer, N.5
Schulz-Trieglaff, O.6
Sturm, M.7
-
11
-
-
42249108173
-
OpenMS – an open-source software framework for mass spectrometry
-
Sturm M, Bertsch A, Gröpl C, Hildebrandt A, Hussong R, Lange E, Pfeifer N, Schulz-Trieglaff O, Zerck A, Reinert K, Kohlbacher O (2008) OpenMS – an open-source software framework for mass spectrometry. BMC Bioinform 9:163
-
(2008)
BMC Bioinform
, vol.9
-
-
Sturm, M.1
Bertsch, A.2
Gröpl, C.3
Hildebrandt, A.4
Hussong, R.5
Lange, E.6
Pfeifer, N.7
Schulz-Trieglaff, O.8
Zerck, A.9
Reinert, K.10
Kohlbacher, O.11
-
12
-
-
60549117342
-
Comparison of public peak detection algorithms for MALDI mass spectrometry data analysis
-
Yang C, He Z, Yu W (2009) Comparison of public peak detection algorithms for MALDI mass spectrometry data analysis. BMC Bioinform 10:4
-
(2009)
BMC Bioinform
, vol.10
-
-
Yang, C.1
He, Z.2
Yu, W.3
-
13
-
-
67650527108
-
Comparison of feature selection and classification for MALDI-MS data
-
Liu Q, Sung AH, Qiao M, Chen Z, Yang JY, Yang MQ, Huang X, Deng Y (2009) Comparison of feature selection and classification for MALDI-MS data. BMC Genomics 10(Suppl 1):S3
-
(2009)
BMC Genomics
, vol.10
-
-
Liu, Q.1
Sung, A.H.2
Qiao, M.3
Chen, Z.4
Yang, J.Y.5
Yang, M.Q.6
Huang, X.7
Deng, Y.8
-
14
-
-
25144448206
-
Algorithms for alignment of mass spectrometry proteomic data
-
Jeffries N (2005) Algorithms for alignment of mass spectrometry proteomic data. Bioinformatics 21:3066–3073
-
(2005)
Bioinformatics
, vol.21
, pp. 3066-3073
-
-
Jeffries, N.1
|