Diagnosis of colon cancer by attenuated total reflectance-fourier transform infrared microspectroscopy and soft independent modeling of class analogy

Medical Oncology

Volumn 26, Issue 3, 2009, Pages 292-297

  Khanmohammadi, Mohammadreza ^a   Garmarudi, Amir Bagheri ^a,b   Ghasemi, Keyvan ^a   Jaliseh, Hadigheh Kazemi ^c   Kaviani, Ahmad ^d  

^a IMAM KHOMEINI INTERNATIONAL UNIVERSITY   (Iran)

^b ERI   (Iran)

^c QAZVIN UNIVERSITY OF MEDICAL SCIENCES   (Iran)

^d TEHRAN UNIVERSITY OF MEDICAL SCIENCES   (Iran)

Author keywords

Chemometrics; Colon cancer; Diagnosis; Infrared; Microspectroscopy

Indexed keywords

ARTICLE; ATTENUATED TOTAL REFLECTANCE FOURIER TRANSFORM INFRARED MICROSPECTROSCOPY; CANCER DIAGNOSIS; CANCER SIZE; CHEMOMETRICS; CLINICAL EVALUATION; COLON; COLON BIOPSY; COLON CANCER; CONTROLLED STUDY; DIAGNOSTIC ACCURACY; HISTOPATHOLOGY; HUMAN; HUMAN TISSUE; INFRARED SPECTROSCOPY; NEAR INFRARED REFLECTANCE SPECTROSCOPY; NON INVASIVE PROCEDURE; PRINCIPAL COMPONENT ANALYSIS; PRIORITY JOURNAL; SENSITIVITY AND SPECIFICITY; SOFT INDEPENDENT MODELING OF CLASS ANALOGY;

COLONIC NEOPLASMS; FORMALDEHYDE; HISTOCYTOCHEMISTRY; HUMANS; MODELS, STATISTICAL; PARAFFIN EMBEDDING; PRINCIPAL COMPONENT ANALYSIS; REPRODUCIBILITY OF RESULTS; SIGNAL PROCESSING, COMPUTER-ASSISTED; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; TISSUE FIXATION;

EID: 77249139100     PISSN: 13570560     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12032-008-9118-3     Document Type: Article

References (29)

1. S Argov J Ramesh A Salman I Sinelnikov J Goldstein H Guterman S Mordechai 2002 Diagnostic potential of Fourier-transform infrared microspectroscopy and advanced computational methods in colon cancer patients J Biomed Opt 7 248 54 10.1117/1.1463051 11966311 10.1117/1.1463051 (Pubitemid 34699151)
2. JA Fisher C Fikry AB Troxel 2006 Cutting Cost and Increasing Access to Colorectal Cancer Screening: Another Approach to Following the Guidelines Cancer Epidem Biomark 15 108 13 10.1158/1055-9965.EPI-05-0198 10.1158/1055-9965.EPI- 05-0198
3. TJ Zuber 2001 Flexible sigmoidoscopy Am Fam Physician 63 1375 92 11310651 1:STN:280:DC%2BD3M3hvV2mtQ%3D%3D
4. T Fibus 2000 Comparison of colonoscopy and double-contrast barium enema N Engl J Med 343 1728 29 10.1056/NEJM200012073432311 11185428 10.1056/NEJM200012073432311 1:STN:280:DC%2BD3M%2Fkt1Sqtg%3D%3D
5. DK Rex 2000 Colon tumors and colonoscopy Endoscopy 32 874 83 10.1055/s-2000-8086 11085476 10.1055/s-2000-8086 1:STN:280: DC%2BD3M7ptlKjug%3D%3D
6. H Miyoshi M Oka K Sugi O Saitob K Katsu K Uchida 2000 Accuracy of detection of colorectal neoplasia using an immunochemical occult blood test in symptomatic referred patients: Comparison of retrospective and prospective studies Intern Med 39 701 6 10.2169/internalmedicine.39.701 10969900 10.2169/internalmedicine.39.701 1:STN:280:DC%2BD3M%2FktlKjsQ%3D%3D
7. M Diem M Romeo S Boydston-White M Miljkovic C Matthäus 2004 A decade of vibrational micro-spectroscopy of human cells and tissue (1994-2004) Analyst 129 880 5 10.1039/b408952a 15457314 10.1039/b408952a 1:CAS:528: DC%2BD2cXotVSgsrY%3D (Pubitemid 39434019)
8. Dukor RK. Vibrational spectroscopy in the detection of cancer. In: Chalmers JM, Griffiths PR, editors. Handbook of vibrational spectroscopy. Chichester: John Wiley & Sons; 2002. p. 3335-61.
9. Shaw RA, Mantsch HH. Infrared spectroscopy in clinical and diagnostic analysis. In: Meyers RA, editor. Encyclopedia of analytical chemistry. Chichester: John Wiley & Sons; 2000. p. 83-102.
10. YJ Chen YW Hsieh YD Cheng CC Liao 2001 Study on the secondary structure of protein in amide I band from human colon cancer tissue by Fourier-transform infrared spectroscopy Chang Gung Med J 24 541 6 11725623 1:STN:280: DC%2BD3MnnvFahtg%3D%3D
11. Y Ren YZ Xu J Wang YF Zhang F Wang JS Shi JG Wu 2003 FTIR spectroscopic and statistical studies on the lung tissues Guangpuxue Yu Guangpu Fenxi 23 681 4 1:CAS:528:DC%2BD3sXnt1eitr0%3D
12. B Rigas S Morgello IS Goldman PTT Wong 1990 Human colorectal cancers display abnormal fourier-transform infrared spectra Proc Natl Acad Sci USA 87 8140 44 10.1073/pnas.87.20.8140 2236027 10.1073/pnas.87.20.8140 1:CAS:528:DyaK3cXmtV2itbw%3D
13. PTT Wong B Rigas 1990 Infrared spectra of microtome sections of human colon tissues Appl Spectrosc 44 1715 18 10.1366/0003702904417481 10.1366/0003702904417481 1:CAS:528:DyaK3MXhtl2hsro%3D
14. PTT Wong S Lacelle HM Yazdi 1993 Normal and malignant human colonic tissues investigated by pressure-tuning FT-IR spectroscopy Appl Spectrosc 47 1830 956 10.1366/0003702934065885 10.1366/0003702934065885 1:CAS:528: DyaK2cXis1Ortw%3D%3D
15. B Rigas PTT Wong 1992 Human colon adenocarcinoma cell lines display infrared spectroscopic features of malignant colon tissues Cancer Res 52 84 8 1727389 1:CAS:528:DyaK38Xls1Cquw%3D%3D
16. R Manoharan Y Wang RR Dasari S Singer RP Rava MS Feld 1995 Ultraviolet resonance raman spectroscopy for detection of colon cancer Lasers Life Sci 6 217
17. Cooley WW, Lohnes RP. Multivariate data analysis. NewYork: Wiley; 1971.
18. Mardia KV, Kent JT, Bibby JM. Multivariate analysis. London: Academic; 1989.
19. Morrison DF. Multivariate statistical methods. Auckland: McGraw-Hill International; 1978.
20. Deming SN, Morgan SL. Experimental design: a chemometric approach. Amsterdam: Elsevier; 1993.
21. Wackernagel H. Multivariate geostatistic: an introduction with application. Heidelberg: Springer; 2003.
22. Brereton RG. Chemometrics. London: Wiley; 2003.
23. Zupan J, Gasteiger J. Neural networks for chemists. Weinheim: VCH; 1993.
24. M Khanmohammadi MA Ansari A Bagheri Garmarudi G Hassanzadeh G Garoosi 2007 Cancer diagnosis by discrimination between normal and malignant human blood samples using attenuated total reflectance-Fourier transform infrared spectroscopy Cancer Invest 25 397 404 10.1080/02770900701512555 17882650 10.1080/02770900701512555 1:CAS:528:DC%2BD2sXhtVGkur7I (Pubitemid 47450668)
25. M Khanmohammadi R Nasiri K Ghasemi S Samani A Bagheri Garmarudi 2007 Diagnosis of basal cell carcinoma by infrared spectroscopy of whole blood samples applying soft independent modeling class analogy J Cancer Res Clin 133 1001 10 10.1007/s00432-007-0286-x 10.1007/s00432-007-0286-x (Pubitemid 47561719)
26. Wold S, Albano C, Edlund U, Esbensen K, Hellberg S, Johansson E, et al. Pattern recognition by means of disjoint principal component models (SIMCA): philosophy and methods'. In: Hoskuldsson A, Esbensen K, editors. Proc Symp Applied Statistics, NEUCC. Copenhagen: RECAU and RECKU; 1981. p. 183-218.
27. Wold S, Albano C, Dunn WJ, Edlund U, Esbensen K, Hellberg S, et al. Multivariate data analysis in chemistry. In: Kowalski BR, Reidel D, editors. Chemometrics, mathematics and statistics in chemistry. Dodrecht: Publishing Company; 1984.
28. Wold S, Sjostrom M. SIMCA, a method for analyzing chemical data in terms of similarity and analogy. In: Kowalski BR, editor. Chemometrics, theory and application. Washington, DC: American Chemical Society; 1977.
29. BK Lavine PC Jurs DR Henry 1988 Chance classifications by nonparametric linear discriminant functions J Chemom 2 1 10 10.1002/cem.1180020103 10.1002/cem.1180020103