Effect of nitrogen and phosphorus fertilization on the composition of rhizobacterial communities of two Chilean Andisol pastures

World Journal of Microbiology and Biotechnology

Volumn 30, Issue 1, 2014, Pages 99-107

  Jorquera, Milko A ^a   Martínez, Oscar A ^b   Marileo, Luis G ^a   Acuña, Jacquelinne J ^a   Saggar, Surinder ^c   Mora, María L ^a  

^a UNIVERSIDAD DE LA FRONTERA   (Chile)

^b UNIVERSIDAD AUSTRAL DE CHILE   (Chile)

^c LANDCARE RESEARCH   (New Zealand)

Author keywords

Andisol; Bacterial community; Fertilization; Pasture; Rhizosphere

Indexed keywords

ANDISOLS; BACTERIAL COMMUNITY; FERTILIZATION; PASTURE; RHIZOSPHERE;

BACTERIA; ELECTROPHORESIS; GENES; GRAPH THEORY; MOLECULAR STRUCTURE; NITROGEN; PHOSPHATASES; PHOSPHATE FERTILIZERS; POLYMERASE CHAIN REACTION; RNA; SOILS; UREA;

AGRICULTURE;

BACTERIA (MICROORGANISMS);

FERTILIZER; NITROGEN; PHOSPHORUS; RNA 16S;

ARTICLE; BACTERIUM; BIOTA; CHILE; CLASSIFICATION; DENATURING GRADIENT GEL ELECTROPHORESIS; GENETICS; METABOLISM; MICROBIOLOGY; UTILIZATION REVIEW;

BACTERIA; BIOTA; CHILE; DENATURING GRADIENT GEL ELECTROPHORESIS; FERTILIZERS; NITROGEN; PHOSPHORUS; RNA, RIBOSOMAL, 16S; SOIL MICROBIOLOGY;

EID: 84891661072     PISSN: 09593993     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11274-013-1427-9     Document Type: Article

References (41)

1. Alfaro MV, Salazar FS, Oenema O, Iraira S, Teuber N, Ramírez L, Villaroel D (2009) Nutrients balances in beef cattle production systems and their implications for the environment. RC Suelo Nutr Veg 9: 40-54.
2. Borie F, Rubio R (2003) Total and organic phosphorus in Chilean volcanic soils. Gayana Bot 60: 69-78.
3. Chhabra S, Brazil D, Morrissey J, Burke J, O'Gara F, Dowling DN (2013) Fertilization management affects the alkaline phosphatase bacterial community in barley rhizosphere soil. Biol Fertil Soils 49: 31-39.
4. Chu HY, Hosen Y, Yagi K, Okada K, Ito O (2005) Soil microbial biomass and activities in a Japanese Andisol as affected by controlled release and application depth of urea. Biol Fertil Soils 42: 89-96.
5. Chu H, Fujii T, Morimoto S, Lin X, Yagi Y, Hu J, Zhang J (2007) Community structure of ammonia-oxidizing bacteria under long-term application of mineral fertilizer and organic manure in a sandy loam soil. Appl Environ Microbiol 73: 485-491.
6. Coelho MRR, Marriel IE, Jenkins SN, Lanyon CV, Seldin L, O'donnell AG (2009) Molecular detection and quantification of nifH gene sequences in the rhizosphere of sorghum (Sorghum bicolor) sown with two levels of nitrogen fertilizer. Appl Soil Ecol 42: 48-53.
7. Dahllöf I, Baillie H, Kjelleberg S (2000) rpoB-based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity. Appl Environ Microb 66: 3376-3380.
8. Dawson CJ, Hilton J (2011) Fertiliser availability in a resource-limited world: production and recycling of nitrogen and phosphorus. Food Policy 36: 514-522.
9. Fierer N, Jackson RB (2006) The diversity and biogeography of soil bacterial communities. Proc Natl Acad Sci USA 103: 626-631.
10. Gomez E, Garland JL (2012) Effects of tillage and fertilization on physiological profiles of soil microbial communities. Appl Soil Ecol 61: 327-332.
11. Hallin S, Jones CM, Schloter M, Philippot L (2009) Relationship between N-cycling communities and ecosystem functioning in a 50-year-old fertilization experiment. ISME J 3: 597-605.
12. Hallin S, Welsh A, Stenström J, Hallet S, Enwall K, Bru D, Philippot L (2012) Soil functional operating range linked to microbial biodiversity and community composition using denitrifiers as model guild. PLoS One. doi: 10. 1371/journal. pone. 0051962.
13. Hamer U, Potthast K, Makeschin F (2009) Urea fertilisation affected soil organic matter dynamics and microbial community structure in pasture soils of Southern Ecuador. Appl Soil Ecol 43: 226-233.
14. Iwamoto T, Tani K, Nakamura K, Suzuki Y, Kitagawa M, Eguchi M, Nasu M (2000) Monitoring impact of in situ biostimulation treatment on ground-water bacterial community by DGGE. FEMS Microbiol Ecol 32: 129-141.
15. Jorquera MA, Hernández M, Martinez O, Marschner P, Mora ML (2010) Detection of aluminium tolerance plasmids and microbial diversity in the rhizosphere of plants grown in acidic volcanic soil. Eur J Soil Biol 46: 255-263.
16. Jorquera MA, Saavedra N, Maruyama F, Richardson AE, Crowley DE, Catrilaf RC, Henriquez EJ, Mora ML (2012) Phytate addition to soil induces changes in the abundance and expression of Bacillus ß-propeller phytase genes in the rhizosphere. FEMS Microbiol Ecol 83: 352-360.
17. Martinez OA, Jorquera MA, Crowley DE, Mora ML (2011) Influence of nitrogen fertilisation on pasture culturable rhizobacteria occurrence and the role of environmental factor son their potential PGPR activities. Biol Fertil Soils 47: 875-885.
18. Mora M, Canales J (1995a) Humin-clay interactions on surface reactivity in Chilean Andisols. Commun Soil Sci Plant Anal 26: 2819-2828.
19. Mora M, Canales J (1995b) Interactions of humic substances with allophanic compounds. Commun Soil Sci Plant Anal 26: 2805-2817.
20. Mora ML, Schnettler B, Demanet FR (1999) Effect of liming and gypsum on soil chemistry, yield and mineral composition of ryegrass grown in an acidic. Commun Soil Sci Plant Anal 30: 1251-1266.
21. Mora ML, Alfaro M, Williams P, Stehr W, Demanet R (2004) Effect of fertiliser input on soil acidification in relation to growth and chemical composition of a pasture, and animal production. RC Suelo Nutr Veg 4: 29-40.
22. Murphy J, Riley JP (1962) A modified single solution method for the determination of phosphate in natural waters. Anal Chim Acta 27: 31-36.
23. Núñez RP, Demanet R, Alfaro M, Mora ML (2010) Nitrogen soil budgets in contrasting dairy grazing systems of southern Chile, a short term study. RC Suelo Nutr Veg 10: 170-183.
24. Peixoto RS, da Costa Coutinho HL, Rumjanek NG, Macrae A, Rosado AS (2002) Use of rpoB and 16S rRNA genes to analyse bacterial diversity of a tropical soil using PCR and DGGE. Lett Appl Microbiol 35: 316-320.
25. Peixoto RS, Chaer GM, Franco N, Reis Junior FB, Mendes IC, Rosado AS (2010) A decade of land use contributes to changes in the chemistry, biochemistry and bacterial community structures of soils in the Cerrado. Antonie van Leeuwenhoek 98: 403-413.
26. Perucci P, Bonciarelli U, Santilocchi R, Bianchi AA (1997) Effect of rotation, nitrogen fertilization and management of crop residues on some chemical, microbiological and biochemical properties of soil. Biol Fertil Soils 24: 311-316.
27. Reed SC, Seastedt TR, Mann CM, Suding KN, Townsend AR, Cherwin KL (2007) Phosphorus fertilization stimulates nitrogen fixation and increases inorganic nitrogen concentrations in a restored prairie. Appl Soil Ecol 36: 238-242.
28. Rotthauwe JH, Witzel KP, Liesack W (1997) The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl Environ Microbiol 63: 4704-4712.
29. o 34, Chile. http://www2. inia. cl/medios/biblioteca/serieactas/NR33998. pdf.
30. Saggar S, Luo J, Giltrap DL, Maddena M (2009) Nitrous oxide emissions from temperate grasslands: processes, measurements, modeling and mitigation, chapter 1. In: Sheldon AI, Barnhart EP (eds) Nitrous oxide Emissions Research Progress. Nova Science Publishers Inc., New York, pp 1-66.
31. Saggar S, Luo J, Kim D-G, Jha N (2011) Intensification in pastoral farming: impacts on soil attributes and gaseous emissions. In: Singh BP, Cowie AL, Chan KY (eds) Soil health and climate change (soil biology series). Springer, Heidelberg, pp 207-236.
32. Sakurai M, Wasaki J, Tomizawa Y, Shinano T, Osaki M (2008) Analysis of bacterial communities on alkaline phosphatase genes in soil supplied with organic matter. Soil Sci Plant Nutr 54: 62-71.
33. Shen JP, Zhang LM, Guo JF, Ray JL, He JZ (2010) Impact of long-term fertilization practices on the abundance and composition of soil bacterial communities in Northeast China. Appl Soil Ecol 46: 119-124.
34. Shi Y, Lalande R, Ziadi N, Sheng M, Hu Z (2012) An assessment of the soil microbial status after 17 years of tillage and mineral P fertilization management. Appl Soil Ecol 62: 14-23.
35. Suzuki MT, Taylor LT, DeLong EF (2000) Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5′-nuclease assays. Appl Environ Microbiol 66: 4605-4614.
36. Suzuki C, Nagaoka K, Shimada A, Takenaka M (2009) Bacterial community are more dependent on soil type than fertilizer type, but the reverse is true for fungal communities. Soil Sci Plant Nutr 55: 80-90.
37. van der Heijden MG, Bardgett RD, van Straalen NM (2008) The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems. Ecol Lett 11: 296-310.
38. Wartiainen I, Eriksson T, Zheng W, Rasmussen U (2008) Variation in the active diazotrophic community in rice paddy-nifH PCR-DGGE analysis of rhizosphere and bulk soil. Appl Soil Ecol 39: 65-75.
39. Webster G, Embley TM, Prosser JI (2002) Grassland management regimens reduce small-scale heterogeneity and species diversity of β-proteobacterial ammonia oxidizer populations. Appl Environ Microbiol 68: 20-30.
40. Yang YJ, Dungan R, Ibekwe AM, Valenzuela-Solano C, Crohn D, Crowley D (2003) Effect of organic mulches on soil bacterial communities one year after application. Biol Fertil Soils 38: 273-281.
41. Yevdokimov IV, Gattinger A, Buegger F, Schloter M, Munch JC (2012) Changes in the structure and activity of a soil microbial community caused by inorganic nitrogen fertilization. Microbiology 81: 743-749.