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Volumn 385, Issue 2, 2014, Pages 160-167

Quantitative developmental transcriptomes of the sea urchin Strongylocentrotus purpuratus

Author keywords

Developmental transcriptome; RNA sequencing; Sea urchin

Indexed keywords

TRANSCRIPTOME;

EID: 84891626964     PISSN: 00121606     EISSN: 1095564X     Source Type: Journal    
DOI: 10.1016/j.ydbio.2013.11.019     Document Type: Article
Times cited : (109)

References (32)
  • 1
    • 0019866069 scopus 로고
    • Accumulation in embryogenesis of five mRNAs enriched in the ectoderm of the sea urchin pluteus
    • Bruskin A.M., Tyner A.L., Wells D.E., Showman R.M., Klein W.H. Accumulation in embryogenesis of five mRNAs enriched in the ectoderm of the sea urchin pluteus. Dev. Biol. 1981, 87:308-318.
    • (1981) Dev. Biol. , vol.87 , pp. 308-318
    • Bruskin, A.M.1    Tyner, A.L.2    Wells, D.E.3    Showman, R.M.4    Klein, W.H.5
  • 5
    • 0017281072 scopus 로고
    • Enzymes of DNA biosynthesis in developing sea urchins. Changes in ribonucleotide reductase, thymidine, and thymidylate kinase activities
    • de Petrocellis B., Rossi M. Enzymes of DNA biosynthesis in developing sea urchins. Changes in ribonucleotide reductase, thymidine, and thymidylate kinase activities. Dev. Biol. 1976, 48:250-257.
    • (1976) Dev. Biol. , vol.48 , pp. 250-257
    • de Petrocellis, B.1    Rossi, M.2
  • 6
    • 0023651010 scopus 로고
    • Characterization of a cDNA clone coding for a sea urchin histone H2A variant related to the H2A.F/Z histone protein in vertebrates
    • Ernst S.G., Miller H., Brenner C.A., Nocente-McGrath C., Francis S., McIsaac R. Characterization of a cDNA clone coding for a sea urchin histone H2A variant related to the H2A.F/Z histone protein in vertebrates. Nucleic Acids Res. 1987, 15:4629-4644.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 4629-4644
    • Ernst, S.G.1    Miller, H.2    Brenner, C.A.3    Nocente-McGrath, C.4    Francis, S.5    McIsaac, R.6
  • 8
    • 0020004909 scopus 로고
    • Developmental patterns of cytoplasmic transcript prevalence in sea urchin embryos
    • Flytzanis C.N., Brandhorst B.P., Britten R.J., Davidson E.H. Developmental patterns of cytoplasmic transcript prevalence in sea urchin embryos. Dev. Biol. 1982, 91:27-35.
    • (1982) Dev. Biol. , vol.91 , pp. 27-35
    • Flytzanis, C.N.1    Brandhorst, B.P.2    Britten, R.J.3    Davidson, E.H.4
  • 9
    • 22544432531 scopus 로고    scopus 로고
    • Noise-robust soft clustering of gene expression time-course data
    • Futschik M.E., Carlisle B. Noise-robust soft clustering of gene expression time-course data. J. Bioinf. Comput. Biol. 2005, 3:965-988.
    • (2005) J. Bioinf. Comput. Biol. , vol.3 , pp. 965-988
    • Futschik, M.E.1    Carlisle, B.2
  • 11
    • 0019491506 scopus 로고
    • Protein synthesis, polyribosomes, and peptide elongation in early development of Strongylocentrotus purpuratus
    • Goustin A.S., Wilt F.H. Protein synthesis, polyribosomes, and peptide elongation in early development of Strongylocentrotus purpuratus. Dev. Biol. 1981, 82:32-40.
    • (1981) Dev. Biol. , vol.82 , pp. 32-40
    • Goustin, A.S.1    Wilt, F.H.2
  • 14
    • 34547634659 scopus 로고    scopus 로고
    • High regulatory gene use in sea urchin embryogenesis: implications for bilaterian development and evolution
    • Howard-Ashby M.L., Materna S.C., Brown C.T., Tu Q., Oliveri P., Cameron R.A., Davidson E.H. High regulatory gene use in sea urchin embryogenesis: implications for bilaterian development and evolution. Dev. Biol. 2006, 300:27-34.
    • (2006) Dev. Biol. , vol.300 , pp. 27-34
    • Howard-Ashby, M.L.1    Materna, S.C.2    Brown, C.T.3    Tu, Q.4    Oliveri, P.5    Cameron, R.A.6    Davidson, E.H.7
  • 15
    • 0027177245 scopus 로고
    • Ferritin gene expression is developmentally regulated and induced by heat shock in sea urchin embryos
    • Infante A.A., Infante D., Rimland J. Ferritin gene expression is developmentally regulated and induced by heat shock in sea urchin embryos. Dev. Genet. 1993, 14:58-68.
    • (1993) Dev. Genet. , vol.14 , pp. 58-68
    • Infante, A.A.1    Infante, D.2    Rimland, J.3
  • 16
    • 0031452170 scopus 로고    scopus 로고
    • Metabolic importance of Na+/K+-ATPase activity during sea urchin development
    • Leong P., Manahan D. Metabolic importance of Na+/K+-ATPase activity during sea urchin development. J. Exp. Biol. 1997, 200:2881-2892.
    • (1997) J. Exp. Biol. , vol.200 , pp. 2881-2892
    • Leong, P.1    Manahan, D.2
  • 17
    • 0031017529 scopus 로고    scopus 로고
    • The five cleavage-stage (CS) histones of the sea urchin are encoded by a maternally expressed family of replacement histone genes: functional equivalence of the CS H1 and frog H1M (B4) proteins
    • Mandl B., Brandt W.F., Superti-Furga G., Graninger P.G., Birnstiel M.L., Busslinger M. The five cleavage-stage (CS) histones of the sea urchin are encoded by a maternally expressed family of replacement histone genes: functional equivalence of the CS H1 and frog H1M (B4) proteins. Mol. Cell Biol. 1997, 17:1189-1200.
    • (1997) Mol. Cell Biol. , vol.17 , pp. 1189-1200
    • Mandl, B.1    Brandt, W.F.2    Superti-Furga, G.3    Graninger, P.G.4    Birnstiel, M.L.5    Busslinger, M.6
  • 18
    • 34748918651 scopus 로고    scopus 로고
    • The sea urchin histone gene complement
    • Marzluff W.F., Sakallah S., Kelkar H. The sea urchin histone gene complement. Dev. Biol. 2006, 300:308-320.
    • (2006) Dev. Biol. , vol.300 , pp. 308-320
    • Marzluff, W.F.1    Sakallah, S.2    Kelkar, H.3
  • 19
    • 77956628617 scopus 로고    scopus 로고
    • High accuracy, high-resolution prevalence measurement for the majority of locally expressed regulatory genes in early sea urchin development
    • Materna S.C., Nam J., Davidson E.H. High accuracy, high-resolution prevalence measurement for the majority of locally expressed regulatory genes in early sea urchin development. Gene Expr. Patterns 2010, 10:177-184.
    • (2010) Gene Expr. Patterns , vol.10 , pp. 177-184
    • Materna, S.C.1    Nam, J.2    Davidson, E.H.3
  • 21
    • 0011728246 scopus 로고
    • Characteristics of the utilization of nucleosides by embryos of Paracentrotus lividus
    • Nemer M. Characteristics of the utilization of nucleosides by embryos of Paracentrotus lividus. J. Biol. Chem. 1962, 237:143-149.
    • (1962) J. Biol. Chem. , vol.237 , pp. 143-149
    • Nemer, M.1
  • 22
    • 0025911371 scopus 로고
    • Structure, spatial, and temporal expression of two sea urchin metallothionein genes, SpMTB1 and SpMTA
    • Nemer M., Thornton R.D., Stuebing E.W., Harlow P. Structure, spatial, and temporal expression of two sea urchin metallothionein genes, SpMTB1 and SpMTA. J. Biol. Chem. 1991, 266:6586-6593.
    • (1991) J. Biol. Chem. , vol.266 , pp. 6586-6593
    • Nemer, M.1    Thornton, R.D.2    Stuebing, E.W.3    Harlow, P.4
  • 23
    • 43149086112 scopus 로고    scopus 로고
    • Global regulatory logic for specification of an embryonic cell lineage
    • Oliveri P., Tu Q., Davidson E.H. Global regulatory logic for specification of an embryonic cell lineage. Proc. Natl. Acad. Sci. USA 2008, 105:5955-5962.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 5955-5962
    • Oliveri, P.1    Tu, Q.2    Davidson, E.H.3
  • 24
    • 71149103484 scopus 로고    scopus 로고
    • Modularity and design principles in the sea urchin embryo gene regulatory network
    • Peter I.S., Davidson E.H. Modularity and design principles in the sea urchin embryo gene regulatory network. FEBS Lett. 2009, 583:3948-3958.
    • (2009) FEBS Lett. , vol.583 , pp. 3948-3958
    • Peter, I.S.1    Davidson, E.H.2
  • 25
    • 84867349994 scopus 로고    scopus 로고
    • Predictive computation of genomic logic processing functions in embryonic development
    • Peter I.S., Faure E., Davidson E.H. Predictive computation of genomic logic processing functions in embryonic development. Proc. Natl. Acad. Sci. USA 2012, 109:16434-16442.
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 16434-16442
    • Peter, I.S.1    Faure, E.2    Davidson, E.H.3
  • 26
    • 84858446718 scopus 로고    scopus 로고
    • Regulation of cytoplasmic mRNA decay
    • Schoenberg D.R., Maquat L.E. Regulation of cytoplasmic mRNA decay. Nat. Rev. Genet. 2012, 13:246-259.
    • (2012) Nat. Rev. Genet. , vol.13 , pp. 246-259
    • Schoenberg, D.R.1    Maquat, L.E.2
  • 28
    • 0025308226 scopus 로고
    • Temporal and spatial transcriptional regulation of the aboral ectoderm-specific Spec genes during sea urchin embryogenesis
    • Tomlinson C.R., Klein W.H. Temporal and spatial transcriptional regulation of the aboral ectoderm-specific Spec genes during sea urchin embryogenesis. Mol. Reprod. Dev. 1990, 25:328-338.
    • (1990) Mol. Reprod. Dev. , vol.25 , pp. 328-338
    • Tomlinson, C.R.1    Klein, W.H.2
  • 30
    • 84867146009 scopus 로고    scopus 로고
    • Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis
    • Tu Q., Cameron R.A., Worley K.C., Gibbs R.A., Davidson E.H. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Genome Res. 2012, 22:2079-2087.
    • (2012) Genome Res. , vol.22 , pp. 2079-2087
    • Tu, Q.1    Cameron, R.A.2    Worley, K.C.3    Gibbs, R.A.4    Davidson, E.H.5
  • 32
    • 0014876225 scopus 로고
    • The acceleration of ribonucleic acid synthesis in cleaving sea urchin embryos
    • Wilt F.H. The acceleration of ribonucleic acid synthesis in cleaving sea urchin embryos. Dev. Biol. 1970, 23:444-455.
    • (1970) Dev. Biol. , vol.23 , pp. 444-455
    • Wilt, F.H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.