메뉴 건너뛰기




Volumn 5, Issue 6, 2013, Pages 1099-1114

CRISPR regulation of intraspecies diversification by limiting is transposition and intercellular recombination

Author keywords

Clustered regularly interspaced short palindromic repeat (CRISPR); Diversification; Genome rearrangement; Intercellular recombination; Mobile genetic element (MGE); Porphyromonas gingivalis

Indexed keywords

BACTERIAL DNA; TRANSPOSON;

EID: 84891621438     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evt075     Document Type: Article
Times cited : (28)

References (74)
  • 1
    • 0042318548 scopus 로고    scopus 로고
    • Associations between inverted repeats and the structural evolution of bacterial genomes
    • Achaz G, Coissac E, Netter P, Rocha EP. 2003. Associations between inverted repeats and the structural evolution of bacterial genomes. Genetics 164:1279-1289.
    • (2003) Genetics , vol.164 , pp. 1279-1289
    • Achaz, G.1    Coissac, E.2    Netter, P.3    Rocha, E.P.4
  • 2
    • 77954948121 scopus 로고    scopus 로고
    • Interference with histidyl-tRNA synthetase by a CRISPR spacer sequence as a factor in the evolution of Pelobacter carbinolicus
    • Aklujkar M, Lovley DR. 2010. Interference with histidyl-tRNA synthetase by a CRISPR spacer sequence as a factor in the evolution of Pelobacter carbinolicus. BMC Evol Biol. 10:230.
    • (2010) BMC Evol Biol. , vol.10 , pp. 230
    • Aklujkar, M.1    Lovley, D.R.2
  • 3
    • 0037265493 scopus 로고    scopus 로고
    • Molecular interaction of Porphyromonas gingivalis with host cells: Implication for the microbial pathogenesis of periodontal disease
    • Amano A. 2003. Molecular interaction of Porphyromonas gingivalis with host cells: implication for the microbial pathogenesis of periodontal disease. J Periodontol. 74:90-96.
    • (2003) J Periodontol. , vol.74 , pp. 90-96
    • Amano, A.1
  • 4
    • 0032953878 scopus 로고    scopus 로고
    • Distribution of Porphyromonas gingivalis strains with fimA genotypes in periodontitis patients
    • Amano A, Nakagawa I, Kataoka K, Morisaki I, Hamada S. 1999. Distribution of Porphyromonas gingivalis strains with fimA genotypes in periodontitis patients. J Clin Microbiol. 37:1426-1430.
    • (1999) J Clin Microbiol. , vol.37 , pp. 1426-1430
    • Amano, A.1    Nakagawa, I.2    Kataoka, K.3    Morisaki, I.4    Hamada, S.5
  • 5
    • 1842851984 scopus 로고    scopus 로고
    • Variations of Porphyromonas gingivalis fimbriae in relation to microbial pathogenesis
    • Amano A, Nakagawa I, Okahashi N, Hamada N. 2004. Variations of Porphyromonas gingivalis fimbriae in relation to microbial pathogenesis. J Periodontal Res. 39:136-142.
    • (2004) J Periodontal Res. , vol.39 , pp. 136-142
    • Amano, A.1    Nakagawa, I.2    Okahashi, N.3    Hamada, N.4
  • 6
    • 44449133775 scopus 로고    scopus 로고
    • Virus population dynamics and acquired virus resistance in natural microbial communities
    • Andersson AF, Banfield JF. 2008. Virus population dynamics and acquired virus resistance in natural microbial communities. Science 320:1047-1050.
    • (2008) Science , vol.320 , pp. 1047-1050
    • Andersson, A.F.1    Banfield, J.F.2
  • 7
    • 80053538420 scopus 로고    scopus 로고
    • Complete genome sequence of Methanothermus fervidus type strain (V24S)
    • Anderson I, et al. 2010. Complete genome sequence of Methanothermus fervidus type strain (V24S). Stand Genomic Sci. 3:315-324.
    • (2010) Stand Genomic Sci. , vol.3 , pp. 315-324
    • Anderson, I.1
  • 8
    • 85027927719 scopus 로고    scopus 로고
    • Enterotypes of the human gut microbiome
    • Arumugam M, et al. 2011. Enterotypes of the human gut microbiome. Nature 473:174-180.
    • (2011) Nature , vol.473 , pp. 174-180
    • Arumugam, M.1
  • 9
    • 24644481914 scopus 로고    scopus 로고
    • Regulation of a Bacillus subtilis mobile genetic element by intercellular signaling and the global DNA damage response
    • Auchtung JM, Lee CA, Monson RE, Lehman AP, Grossman AD. 2005. Regulation of a Bacillus subtilis mobile genetic element by intercellular signaling and the global DNA damage response. Proc Natl Acad Sci U S A. 102:12554-12559.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 12554-12559
    • Auchtung, J.M.1    Lee, C.A.2    Monson, R.E.3    Lehman, A.P.4    Grossman, A.D.5
  • 10
    • 34047118522 scopus 로고    scopus 로고
    • CRISPR provides acquired resistance against viruses in prokaryotes
    • Barrangou R, et al. 2007. CRISPR provides acquired resistance against viruses in prokaryotes. Science 315:1709-1712.
    • (2007) Science , vol.315 , pp. 1709-1712
    • Barrangou, R.1
  • 11
    • 80755187812 scopus 로고    scopus 로고
    • CRISPR-Cas systems in bacteria and archaea: Versatile small RNAs for adaptive defense and regulation
    • Bhaya D, Davison M, Barrangou R. 2011. CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation. Annu Rev Genet. 45:273-297.
    • (2011) Annu Rev Genet. , vol.45 , pp. 273-297
    • Bhaya, D.1    Davison, M.2    Barrangou, R.3
  • 12
    • 23844505202 scopus 로고    scopus 로고
    • Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin
    • Bolotin A, Quinquis B, Sorokin A, Ehrlich SD. 2005. Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin. Microbiology 151:2551-2561.
    • (2005) Microbiology , vol.151 , pp. 2551-2561
    • Bolotin, A.1    Quinquis, B.2    Sorokin, A.3    Ehrlich, S.D.4
  • 13
    • 84863826834 scopus 로고    scopus 로고
    • Porphyromonas gingivalis: An invasive and evasive opportunistic oral pathogen
    • Bostanci N, Belibasakis GN. 2012. Porphyromonas gingivalis: an invasive and evasive opportunistic oral pathogen. FEMS Microbiol Lett. 333:1-9.
    • (2012) FEMS Microbiol Lett. , vol.333 , pp. 1-9
    • Bostanci, N.1    Belibasakis, G.N.2
  • 14
    • 83755194968 scopus 로고    scopus 로고
    • CRISPR loci reveal networks of gene exchange in archaea
    • Brodt A, Lurie-Weinberger MN, Gophna U. 2011. CRISPR loci reveal networks of gene exchange in archaea. Biol Direct. 6:65.
    • (2011) Biol Direct. , vol.6 , pp. 65
    • Brodt, A.1    Lurie-Weinberger, M.N.2    Gophna, U.3
  • 16
    • 79960393323 scopus 로고    scopus 로고
    • Non-identity-mediated CRISPR-bacteriophage interaction mediated via the Csy and Cas3 proteins
    • Cady KC, O'Toole GA. 2011. Non-identity-mediated CRISPR-bacteriophage interaction mediated via the Csy and Cas3 proteins. J Bacteriol. 193:3433-3445.
    • (2011) J Bacteriol. , vol.193 , pp. 3433-3445
    • Cady, K.C.1    O'Toole, G.A.2
  • 17
    • 82555183004 scopus 로고    scopus 로고
    • The human oral microbiome database: A web accessible resource for investigating oral microbe taxonomic and genomic information
    • Chen T, et al. 2010. The human oral microbiome database: a web accessible resource for investigating oral microbe taxonomic and genomic information. Database (Oxford) 2010: baq013.
    • (2010) Database (Oxford) , vol.2010
    • Chen, T.1
  • 19
    • 48249144818 scopus 로고    scopus 로고
    • Dynamics of genome rearrangement in bacterial populations
    • Darling AE, Miklós I, Ragan MA. 2008. Dynamics of genome rearrangement in bacterial populations. PLoS Genet. 4:e1000128.
    • (2008) PLoS Genet. , vol.4
    • Darling, A.E.1    Miklós, I.2    Ragan, M.A.3
  • 20
    • 0000250265 scopus 로고
    • Measures of the amount of ecologic association between species
    • Dice LR. 1945. Measures of the amount of ecologic association between species. J Ecol. 26:297-302.
    • (1945) J Ecol. , vol.26 , pp. 297-302
    • Dice, L.R.1
  • 21
    • 0027429553 scopus 로고
    • DNA rearrangements and phenotypic switching in prokaryotes
    • Dybvig K. 1993. DNA rearrangements and phenotypic switching in prokaryotes. Mol Microbiol. 10:465-471.
    • (1993) Mol Microbiol. , vol.10 , pp. 465-471
    • Dybvig, K.1
  • 22
    • 38149097511 scopus 로고    scopus 로고
    • Fima genotypes and multilocus sequence types of Porphyromonas gingivalis from patients with periodontitis
    • Enersen M, Olsen I, Kvalheim Ø, Caugant DA. 2008. fimA genotypes and multilocus sequence types of Porphyromonas gingivalis from patients with periodontitis. J Clin Microbiol. 46:31-42.
    • (2008) J Clin Microbiol. , vol.46 , pp. 31-42
    • Enersen, M.1    Olsen, I.2    Kvalheim, Ø.3    Caugant, D.A.4
  • 23
    • 30744467468 scopus 로고    scopus 로고
    • Multilocus sequence typing of Porphyromonas gingivalis strains from different geographic origins
    • Enersen M, Olsen I, van Winkelhoff AJ, Caugant DA. 2006. Multilocus sequence typing of Porphyromonas gingivalis strains from different geographic origins. J Clin Microbiol. 44:35-41.
    • (2006) J Clin Microbiol. , vol.44 , pp. 35-41
    • Enersen, M.1    Olsen, I.2    Van Winkelhoff, A.J.3    Caugant, D.A.4
  • 24
    • 84862078522 scopus 로고    scopus 로고
    • CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections
    • Fabre L, et al. 2012. CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections. PLoS One 7:e36995.
    • (2012) PLoS One , vol.7
    • Fabre, L.1
  • 25
    • 1342304133 scopus 로고    scopus 로고
    • Eburst: Inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data
    • Feil EJ, Li BC, Aanensen DM, Hanage WP, Spratt BG. 2004. eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J Bacteriol. 186:1518-1530.
    • (2004) J Bacteriol. , vol.186 , pp. 1518-1530
    • Feil, E.J.1    Li, B.C.2    Aanensen, D.M.3    Hanage, W.P.4    Spratt, B.G.5
  • 26
    • 84861342868 scopus 로고    scopus 로고
    • Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing
    • Griffen AL, et al. 2012. Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing. ISME J. 6:1176-1185.
    • (2012) ISME J. , vol.6 , pp. 1176-1185
    • Griffen, A.L.1
  • 27
    • 34547579396 scopus 로고    scopus 로고
    • CRISPRFinder: A web tool to identify clustered regularly interspaced short palindromic repeats
    • Grissa I, Vergnaud G, Pourcel C. 2007. CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic Acids Res. 35:W52-W57.
    • (2007) Nucleic Acids Res. , vol.35
    • Grissa, I.1    Vergnaud, G.2    Pourcel, C.3
  • 28
    • 77958590947 scopus 로고    scopus 로고
    • CRISPR associated diversity within a population of Sulfolobus islandicus
    • Held NL, Herrera A, Cadillo-Quiroz H, Whitaker RJ. 2010. CRISPR associated diversity within a population of Sulfolobus islandicus. PLoS One 5:e12988.
    • (2010) PLoS One , vol.5
    • Held, N.L.1    Herrera, A.2    Cadillo-Quiroz, H.3    Whitaker, R.J.4
  • 29
    • 0019639160 scopus 로고
    • Inversions between ribosomal RNA genes of Escherichia coli
    • Hill CW, Harnish BW. 1981. Inversions between ribosomal RNA genes of Escherichia coli. Proc Natl Acad Sci U S A. 78:7069-7072.
    • (1981) Proc Natl Acad Sci U S A , vol.78 , pp. 7069-7072
    • Hill, C.W.1    Harnish, B.W.2
  • 30
    • 38949214103 scopus 로고    scopus 로고
    • Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus
    • Horvath P, et al. 2008. Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus. J Bacteriol. 190:1401-1412.
    • (2008) J Bacteriol. , vol.190 , pp. 1401-1412
    • Horvath, P.1
  • 31
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson DH, Bryant D. 2006. Application of phylogenetic networks in evolutionary studies. Mol Biol Evol. 23:254-267.
    • (2006) Mol Biol Evol. , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 32
    • 0036137328 scopus 로고    scopus 로고
    • Sequence type analysis and recombinational tests (START)
    • Jolley KA, Feil EJ, Chan MS, Maiden MC. 2001. Sequence type analysis and recombinational tests (START). Bioinformatics 17:1230-1231.
    • (2001) Bioinformatics , vol.17 , pp. 1230-1231
    • Jolley, K.A.1    Feil, E.J.2    Chan, M.S.3    Maiden, M.C.4
  • 33
    • 84868372186 scopus 로고    scopus 로고
    • An evolutionary link between natural transformation and CRISPR adaptive immunity
    • Jorth P, Whiteley M. 2012. An evolutionary link between natural transformation and CRISPR adaptive immunity. MBio 3:e00309-e00312.
    • (2012) MBio , vol.3
    • Jorth, P.1    Whiteley, M.2
  • 34
    • 0141591682 scopus 로고    scopus 로고
    • Multilocus sequence analysis of Porphyromonas gingivalis indicates frequent recombination
    • Koehler A, et al. 2003. Multilocus sequence analysis of Porphyromonas gingivalis indicates frequent recombination. Microbiology 149:2407-2415.
    • (2003) Microbiology , vol.149 , pp. 2407-2415
    • Koehler, A.1
  • 36
    • 2942538300 scopus 로고    scopus 로고
    • Versatile and open software for comparing large genomes
    • Kurtz S, et al. 2004. Versatile and open software for comparing large genomes. Genome Biol. 5:R12.
    • (2004) Genome Biol. , vol.5
    • Kurtz, S.1
  • 37
    • 78651357453 scopus 로고    scopus 로고
    • Insertion sequence-excision enhancer removes transposable elements from bacterial genomes and induces various genomic deletions
    • Kusumoto M, et al. 2011. Insertion sequence-excision enhancer removes transposable elements from bacterial genomes and induces various genomic deletions. Nat Commun. 2:152.
    • (2011) Nat Commun. , vol.2 , pp. 152
    • Kusumoto, M.1
  • 38
    • 0031766801 scopus 로고    scopus 로고
    • Life below the gum line: Pathogenic mechanisms of Porphyromonas gingivalis
    • Lamont RJ, Jenkinson HF. 1998. Life below the gum line: pathogenic mechanisms of Porphyromonas gingivalis. Microbiol Mol Biol Rev. 62:1244-1263.
    • (1998) Microbiol Mol Biol Rev. , vol.62 , pp. 1244-1263
    • Lamont, R.J.1    Jenkinson, H.F.2
  • 39
    • 75549086985 scopus 로고    scopus 로고
    • ACLAME: A CLAssification of Mobile genetic Elements, update 2010
    • Leplae R, Lima-Mendez G, Toussaint A. 2010. ACLAME: A CLAssification of Mobile genetic Elements, update 2010. Nucleic Acids Res. 38:D57-D61.
    • (2010) Nucleic Acids Res. , vol.38
    • Leplae, R.1    Lima-Mendez, G.2    Toussaint, A.3
  • 41
    • 0026810770 scopus 로고
    • A statistical approach to the ecology of Porphyromonas gingivalis
    • Loos BG, et al. 1992. A statistical approach to the ecology of Porphyromonas gingivalis. J Dent Res. 71:353-358.
    • (1992) J Dent Res. , vol.71 , pp. 353-358
    • Loos, B.G.1
  • 42
    • 0034997758 scopus 로고    scopus 로고
    • Intrachromosomal recombination within the vsp locus of Mycoplasma bovis generates a chimeric variable surface lipoprotein antigen
    • Lysnyansky I, Ron Y, Sachse K, Yogev D. 2001. Intrachromosomal recombination within the vsp locus of Mycoplasma bovis generates a chimeric variable surface lipoprotein antigen. Infect Immun. 69:3703-3712.
    • (2001) Infect Immun. , vol.69 , pp. 3703-3712
    • Lysnyansky, I.1    Ron, Y.2    Sachse, K.3    Yogev, D.4
  • 43
    • 79956157571 scopus 로고    scopus 로고
    • Evolution and classification of the CRISPR-Cas systems
    • Makarova KS, et al. 2011. Evolution and classification of the CRISPR-Cas systems. Nat Rev Microbiol. 9:467-477.
    • (2011) Nat Rev Microbiol. , vol.9 , pp. 467-477
    • Makarova, K.S.1
  • 44
    • 57849137502 scopus 로고    scopus 로고
    • CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA
    • Marraffini LA, Sontheimer EJ. 2008. CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA. Science 322:1843-1845.
    • (2008) Science , vol.322 , pp. 1843-1845
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 45
    • 0032924862 scopus 로고    scopus 로고
    • Thermococcus barophilus sp nov., a new barophilic and hyperthermophilic archaeon isolated under high hydrostatic pressure from a deep-sea hydrothermal vent
    • Marteinsson VT, et al. 1999. Thermococcus barophilus sp. nov., a new barophilic and hyperthermophilic archaeon isolated under high hydrostatic pressure from a deep-sea hydrothermal vent. Int J Syst Bacteriol. 49:351-359.
    • (1999) Int J Syst Bacteriol. , vol.49 , pp. 351-359
    • Marteinsson, V.T.1
  • 46
    • 84861896440 scopus 로고    scopus 로고
    • Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus
    • McAdam PR, et al. 2012. Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus. Proc Natl Acad Sci U S A. 109:9107-9112.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 9107-9112
    • McAdam, P.R.1
  • 47
    • 84864425353 scopus 로고    scopus 로고
    • Erwinia amylovora CRISPR elements provide new tools for evaluating strain diversity and for microbial source tracking
    • McGhee GC, Sundin GW. 2012. Erwinia amylovora CRISPR elements provide new tools for evaluating strain diversity and for microbial source tracking. PLoS One 7:e41706.
    • (2012) PLoS One , vol.7
    • McGhee, G.C.1    Sundin, G.W.2
  • 48
    • 84892639035 scopus 로고    scopus 로고
    • last accessed May 24, 2013
    • MetaHIT Consortium. 2010. MetaHIT Draft Bacterial Genomes at the Sanger Institute. Available from: (http://www.sanger.ac.uk/resources/downloads/ bacteria/metahit/, last accessed May 24, 2013).
    • (2010) MetaHIT Draft Bacterial Genomes at the Sanger Institute
  • 49
    • 0030807132 scopus 로고    scopus 로고
    • Recombination and population structure in Escherichia coli
    • Milkman R. 1997. Recombination and population structure in Escherichia coli. Genetics 146:745-750.
    • (1997) Genetics , vol.146 , pp. 745-750
    • Milkman, R.1
  • 50
    • 56149117939 scopus 로고    scopus 로고
    • Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P
    • Naito M, et al. 2008. Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis. DNA Res. 15:215-225.
    • (2008) Gingivalis. DNA Res. , vol.15 , pp. 215-225
    • Naito, M.1
  • 51
    • 79959962123 scopus 로고    scopus 로고
    • Characterization of the Porphyromonas gingivalis conjugative transposon CTnPg 1: Determination of the integration site and the genes essential for conjugal transfer
    • Naito M, et al. 2011. Characterization of the Porphyromonas gingivalis conjugative transposon CTnPg 1:determination of the integration site and the genes essential for conjugal transfer. Microbiology 157:2022-2032.
    • (2011) Microbiology , vol.157 , pp. 2022-2032
    • Naito, M.1
  • 52
    • 0034061752 scopus 로고    scopus 로고
    • Distribution and molecular characterization of Porphyromonas gingivalis carrying a new type of fimA gene
    • Nakagawa I, et al. 2000. Distribution and molecular characterization of Porphyromonas gingivalis carrying a new type of fimA gene. J Clin Microbiol. 38:1909-1914.
    • (2000) J Clin Microbiol. , vol.38 , pp. 1909-1914
    • Nakagawa, I.1
  • 53
    • 0038480005 scopus 로고    scopus 로고
    • Genome sequence of an M3 strain of Streptococcus pyogenes reveals a large-scale genomic rearrangement in invasive strains and new insights into phage evolution
    • Nakagawa I, et al. 2003. Genome sequence of an M3 strain of Streptococcus pyogenes reveals a large-scale genomic rearrangement in invasive strains and new insights into phage evolution. Genome Res. 13:1042-1055.
    • (2003) Genome Res. , vol.13 , pp. 1042-1055
    • Nakagawa, I.1
  • 54
    • 0004460474 scopus 로고
    • Determination of the genome size of the oral anaerobic bacterium Porphyromonas gingivalis by pulsed field gel electrophoresis
    • Nakayama K. 1995. Determination of the genome size of the oral anaerobic bacterium Porphyromonas gingivalis by pulsed field gel electrophoresis. Dent Jpn (Tokyo). 32:25-28.
    • (1995) Dent Jpn (Tokyo). , vol.32 , pp. 25-28
    • Nakayama, K.1
  • 55
    • 0041335299 scopus 로고    scopus 로고
    • Complete genome sequence of the oral pathogenic bacterium Porphyromonas gingivalis strain W83
    • Nelson KE, et al. 2003. Complete genome sequence of the oral pathogenic bacterium Porphyromonas gingivalis strain W83. J Bacteriol. 185:5591-5601.
    • (2003) J Bacteriol. , vol.185 , pp. 5591-5601
    • Nelson, K.E.1
  • 56
    • 0033056106 scopus 로고    scopus 로고
    • Role of genomic rearrangements in producing new ribotypes of Salmonella typhi
    • Ng I, Liu SL, Sanderson KE. 1999. Role of genomic rearrangements in producing new ribotypes of Salmonella typhi. J Bacteriol. 181:3536-3541.
    • (1999) J Bacteriol. , vol.181 , pp. 3536-3541
    • Ng, I.1    Liu, S.L.2    Sanderson, K.E.3
  • 57
    • 79955795335 scopus 로고    scopus 로고
    • CRISPR inhibition of prophage acquisition in Streptococcus pyogenes
    • Nozawa T, et al. 2011. CRISPR inhibition of prophage acquisition in Streptococcus pyogenes. PLoS One 6:e19543.
    • (2011) PLoS One , vol.6
    • Nozawa, T.1
  • 58
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • Ochman H, Lawrence JG, Groisman EA. 2000. Lateral gene transfer and the nature of bacterial innovation. Nature 405:299-304.
    • (2000) Nature , vol.405 , pp. 299-304
    • Ochman, H.1    Lawrence, J.G.2    Groisman, E.A.3
  • 59
    • 33645539749 scopus 로고    scopus 로고
    • Frequent recombination and low level of clonality within Salmonella enterica subspecies I
    • Octavia S, Lan R. 2006. Frequent recombination and low level of clonality within Salmonella enterica subspecies I. Microbiology 152:1099-1108.
    • (2006) Microbiology , vol.152 , pp. 1099-1108
    • Octavia, S.1    Lan, R.2
  • 60
  • 61
    • 69949095870 scopus 로고    scopus 로고
    • Inference of the impact of insertion sequence (IS) elements on bacterial genome diversification through analysis of smallsize structural polymorphisms in Escherichia coli O157 genomes
    • Ooka T, et al. 2009. Inference of the impact of insertion sequence (IS) elements on bacterial genome diversification through analysis of smallsize structural polymorphisms in Escherichia coli O157 genomes. Genome Res. 19:1809-1816.
    • (2009) Genome Res. , vol.19 , pp. 1809-1816
    • Ooka, T.1
  • 63
    • 84859885188 scopus 로고    scopus 로고
    • Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome
    • Pride DT, et al. 2012. Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome. ISME J. 6:915-926.
    • (2012) ISME J. , vol.6 , pp. 915-926
    • Pride, D.T.1
  • 64
    • 84865795822 scopus 로고    scopus 로고
    • Comparisons of clustered regularly interspaced short palindromic repeats and viromes in human saliva reveal bacterial adaptations to salivary viruses
    • Pride DT, Salzman J, Relman DA. 2012. Comparisons of clustered regularly interspaced short palindromic repeats and viromes in human saliva reveal bacterial adaptations to salivary viruses. Environ Microbiol. 14:2564-2576.
    • (2012) Environ Microbiol. , vol.14 , pp. 2564-2576
    • Pride, D.T.1    Salzman, J.2    Relman, D.A.3
  • 67
    • 39149142575 scopus 로고    scopus 로고
    • CRISPR-a widespread system that provides acquired resistance against phages in bacteria and archaea
    • Sorek R, Kunin V, Hugenholtz P. 2008. CRISPR-a widespread system that provides acquired resistance against phages in bacteria and archaea. Nat Rev Microbiol. 6:181-186.
    • (2008) Nat Rev Microbiol. , vol.6 , pp. 181-186
    • Sorek, R.1    Kunin, V.2    Hugenholtz, P.3
  • 68
  • 69
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, et al. 2011. MEGA5:molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 28:2731-2739.
    • (2011) Mol Biol Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1
  • 70
    • 84863404396 scopus 로고    scopus 로고
    • Natural competence is a major mechanism for horizontal DNA transfer in the oral pathogen Porphyromonas gingivalis
    • Tribble GD, et al. 2012. Natural competence is a major mechanism for horizontal DNA transfer in the oral pathogen Porphyromonas gingivalis. MBio 3:e00231-e00211.
    • (2012) MBio , vol.3
    • Tribble, G.D.1
  • 71
    • 34249745345 scopus 로고    scopus 로고
    • Assessing the reliability of eBURST using simulated populations with known ancestry
    • Turner KM, Hanage WP, Fraser C, Connor TR, Spratt BG. 2007. Assessing the reliability of eBURST using simulated populations with known ancestry. BMC Microbiol. 7:30.
    • (2007) BMC Microbiol. , vol.7 , pp. 30
    • Turner, K.M.1    Hanage, W.P.2    Fraser, C.3    Connor, T.R.4    Spratt, B.G.5
  • 72
    • 79961160009 scopus 로고    scopus 로고
    • Complete genome sequence of the bacterium Porphyromonas gingivalis TDC60, which causes periodontal disease
    • Watanabe T, et al. 2011. Complete genome sequence of the bacterium Porphyromonas gingivalis TDC60, which causes periodontal disease. J Bacteriol. 193:4259-4260.
    • (2011) J Bacteriol. , vol.193 , pp. 4259-4260
    • Watanabe, T.1
  • 73
    • 35448985445 scopus 로고    scopus 로고
    • Bacteroides: The good, the bad, and the nitty-gritty
    • Wexler HM. 2007. Bacteroides: the good, the bad, and the nitty-gritty. Clin Microbiol Rev. 20:593-621.
    • (2007) Clin Microbiol Rev. , vol.20 , pp. 593-621
    • Wexler, H.M.1
  • 74
    • 79956068799 scopus 로고    scopus 로고
    • Genomic characterization of Haemophilus parasuis SH0165, a highly virulent strain of serovar 5 prevalent in China
    • Xu Z, et al. 2011. Genomic characterization of Haemophilus parasuis SH0165, a highly virulent strain of serovar 5 prevalent in China. PLoS One 6:e19631.
    • (2011) PLoS One , vol.6
    • Xu, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.