Sequence-defined transposon mutant library of Burkholderia thailandensis

mBio

Volumn 4, Issue 6, 2013, Pages

  Gallagher, Larry A ^a   Ramage, Elizabeth ^a   Patrapuvich, Rapatbhorn ^a   Weiss, Eli ^a   Brittnacher, Mitch ^a   Manoil, Colin ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; ARTICLE; BACTERIAL GENE; BACTERIAL GENETICS; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM MUTANT; BURKHOLDERIA THAILANDENSIS; CONTROLLED STUDY; DNA SEQUENCE; GENE INSERTION SEQUENCE; GENE LIBRARY; GENE MAPPING; GENE MUTATION; GENETIC CODE; GENOTYPE; MELIOIDOSIS; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; TRANSPOSON;

BURKHOLDERIA; DNA TRANSPOSABLE ELEMENTS; DNA, BACTERIAL; GENE LIBRARY; GENETICS, MICROBIAL; MOLECULAR BIOLOGY; MUTAGENESIS, INSERTIONAL; SEQUENCE ANALYSIS, DNA;

EID: 84891603986     PISSN: 21612129     EISSN: 21507511     Source Type: Journal    
DOI: 10.1128/mBio.00604-13     Document Type: Article

References (51)

1. Wiersinga WJ, Currie BJ, Peacock SJ. 2012. Melioidosis. N. Engl. J. Med. 367:1035-1044
2. Brett PJ, DeShazer D, Woods DE. 1998. Burkholderia thailandensis spnov., a Burkholderia pseudomallei-like species. Int. J. Syst. Bacteriol. 48:317-320
3. Yu Y, Kim HS, Chua HH, Lin CH, Sim SH, Lin D, Derr A, Engels R, DeShazer D, Birren B, Nierman WC, Tan P. 2006. Genomic patterns of pathogen evolution revealed by comparison of Burkholderia pseudomallei, the causative agent of melioidosis, avirulent Burkholderia thailandensis. BMC Microbiol. 6:46. doi:10.1186/1471-2180-6-46
4. Wiersinga WJ, de Vos AF, de Beer R, Wieland CW, Roelofs JJ, Woods DE, van der Poll T. 2008. Inflammation patterns induced by different Burkholderia species in mice. Cell. Microbiol. 10:81-87
5. West TE, Hawn TR, Skerrett SJ. 2009. Toll-like receptor signaling inairborne Burkholderia thailandensis infection. Infect. Immun. 77:5612-5622
6. Galyov EE, Brett PJ, DeShazer D. 2010. Molecular insights into Burkholderia pseudomallei and Burkholderia mallei pathogenesis. Annu. Rev.Microbiol. 64:495-517
7. Stevens JM, Ulrich RL, Taylor LA, Wood MW, Deshazer D, StevensMP, Galyov EE. 2005. Actin-binding proteins from Burkholderia mallei and Burkholderia thailandensis can functionally compensate for the actinbased motility defect of a Burkholderia pseudomallei bimA mutant. J. Bacteriol. 187:7857-7862
8. Harley VS, Dance DA, Drasar BS, Tovey G. 1998. Effects of Burkholderiapseudomallei and other Burkholderia species on eukaryotic cells in tissueculture. Microbios 96:71-93
9. French CT, Toesca IJ, Wu TH, Teslaa T, Beaty SM, Wong W, Liu M,Schröder I, Chiou PY, Teitell MA, Miller JF. 2011. Dissection of the Burkholderia intracellular life cycle using a photothermal nanoblade. Proc. Natl. Acad. Sci. U. S. A. 108:12095-12100
10. Fisher NA, Ribot WJ, Applefeld W, DeShazer D. 2012. The Madagascar hissing cockroach as a novel surrogate host for Burkholderia pseudomallei, B. mallei and B. thailandensis. BMC Microbiol. 12:117. doi:10.1186/1471-2180-12-117
11. Wand ME, Müller CM, Titball RW, Michell SL. 2011. Macrophage and Galleria mellonella infection models reflect the virulence of naturally oc curring isolates of B. pseudomallei, B. thailandensis and B. oklahomensis. BMC Microbiol. 11:11. doi:10.1186/1471-2180-11-11
12. Lee YH, Chen Y, Ouyang X, Gan YH. 2010. Identification of tomatoplant as a novel host model for Burkholderia pseudomallei. BMC Microbiol. 10:28. doi:10.1186/1471-2180-10-28
13. Hasselbring BM, Patel MK, Schell MA. 2011. Dictyostelium discoideumas a model system for identification of Burkholderia pseudomallei virulencefactors. Infect. Immun. 79:2079-2088
14. O'Quinn AL, Wiegand EM, Jeddeloh JA. 2001. Burkholderia pseudomallei kills the nematode Caenorhabditis elegans using an endotoxinmediatedparalysis. Cell. Microbiol. 3:381-393.
15. Pilátová M, Dionne MS. 2012. Burkholderia thailandensis is virulent inDrosophila melanogaster. PLoS One 7:e49745. doi:10.1371/journal.pone.0049745
16. Chandler JR, Duerkop BA, Hinz A, West TE, Herman JP, Churchill ME, Skerrett SJ, Greenberg EP. 2009. Mutational analysis of Burkholderi thailandensis quorum sensing and self-aggregation. J. Bacteriol. 191: 5901-5909
17. Haraga A, West TE, Brittnacher MJ, Skerrett SJ, Miller SI. 2008.Burkholderia thailandensis as a model system for the study of the virulence-associated type III secretion system of Burkholderia pseudomallei. Infect. Immun. 76:5402-5411
18. Biggins JB, Gleber CD, Brady SF. 2011. Acyldepsipeptide HDAC inhibitor production induced in Burkholderia thailandensis. Org. Lett. 13:1536-1539
19. Schwarz S, West TE, Boyer F, Chiang WC, Carl MA, Hood RD, Rohmer, Tolker-Nielsen T, Skerrett SJ, Mougous JD. 2010. Burkholderia type VI secretion systems have distinct roles in eukaryotic and bacterial cell interactions. PLoS Pathog. 6:e1001068. doi:10.1371/ journal.ppat.1001068
20. Nikolakakis K, Amber S, Wilbur JS, Diner EJ, Aoki SK, Poole SJ, Tuanyok A, Keim PS, Peacock S, Hayes CS, Low DA. 2012. The toxin/ immunity network of Burkholderia pseudomallei contact-dependent growth inhibition (CDI) systems. Mol. Microbiol. 84:516-529
21. Anderson MS, Garcia EC, Cotter PA. 2012. The Burkholderia bcpAIOB genes define unique classes of two-partner secretion and contact dependent growth inhibition systems. PLoS Genet. 8:e1002877. doi:10.1371/ journal.pgen.1002877
22. Carr G, Seyedsayamdost MR, Chandler JR, Greenberg EP, Clardy J. 2011. Sources of diversity in bactobolin biosynthesis by Burkholderia thailandensis E264. Org. Lett. 13:3048-3051
23. Lazer Adler NR, Stevens JM, Stevens MP, Galyov EE. 2011. Autotransporters and their role in the virulence of Burkholderia pseudomallei and Burkholderia mallei. Front. Microbiol. 2:151. doi:10.3389/ fmicb.2011.00151
24. Moore RA, DeShazer D, Reckseidler S, Weissman A, Woods DE. 1999. Efflux-mediated aminoglycoside and macrolide resistance in Burkholderia pseudomallei. Antimicrob. Agents Chemother. 43:465-470
25. Thongdee M, Gallagher LA, Schell M, Dharakul T, Songsivilai S, Man-oil C. 2008. Targeted mutagenesis of Burkholderia thailandensis and Burkholderia pseudomallei through natural transformation of PCR fragments. Appl. Environ. Microbiol. 74:2985-2989
26. Propst KL, Mima T, Choi KH, Dow SW, Schweizer HP. 2010. A Burkholderia pseudomallei ΔpurM mutant is avirulent in immunocompetent and immunodeficient animals: candidate strain for exclusion from select-agent lists. Infect. Immun. 78:3136-3143
27. Norris MH, Propst KL, Kang Y, Dow SW, Schweizer HP, Hoang TT. 2011. The Burkholderia pseudomallei asd mutant exhibits attenuated intracellular infectivity and imparts protection against acute inhalation melioidosis in mice. Infect. Immun. 79:4010-4018
28. Kang Y, Norris MH, Wilcox BA, Tuanyok A, Keim PS, Hoang TT. 2011. Knockout and pullout recombineering for naturally transformable Burkholderia thailandensis and Burkholderia pseudomallei. Nat. Protoc. 6:1085-1104
29. Choi KH, Mima T, Casart Y, Rholl D, Kumar A, Beacham IR, Schweizer HP. 2008. Genetic tools for select-agent-compliant manipulation of Burk-holderia pseudomallei. Appl. Environ. Microbiol. 74:1064-1075
30. Rholl DA, Trunck LA, Schweizer HP. 2008. In vivo Himar1 transposon mutagenesis of Burkholderia pseudomallei. Appl. Environ. Microbiol. 74: 7529-7535
31. DeShazer D, Brett PJ, Carlyon R, Woods DE. 1997. Mutagenesis of Burkholderia pseudomallei with Tn5-OT182: isolation of motility mutants B. thailandensis Transposon Mutant Library and molecular characterization of the flagellin structural gene. J. Bacteriol. 179:2116-2125
32. Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H. 2006. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio Collection. Mol. Syst. Biol. 2:2006.0008. doi:10.1038/msb4100050.
33. Held K, Ramage E, Jacobs M, Gallagher L, Manoil C. 2012. Sequenceverified two-allele transposon mutant library for Pseudomonas aeruginosa PAO1. J. Bacteriol. 194:6387-6389
34. Salama NR, Manoil C. 2006. Seeking completeness in bacterial mutant hunts. Curr. Opin. Microbiol. 9:307-311
35. Gallagher LA, Ramage E, Jacobs MA, Kaul R, Brittnacher M, Manoil C. 2007. A comprehensive transposon mutant library of Francisella novicida, a bioweapon surrogate. Proc. Natl. Acad. Sci. U. S. A. 104:1009-1014
36. Enstrom M, Held K, Ramage B, Brittnacher M, Gallagher L, Manoil C. 2012. Genotype-phenotype associations in a nonmodel prokaryote. mBio 3(2):e00001-12. doi:10.1128/mBio.00001-12
37. Jacobs MA, Alwood A, Thaipisuttikul I, Spencer D, Haugen E, Ernst S, Will O, Kaul R, Raymond C, Levy R, Chun-Rong L, Guenthner D, Bovee D, Olson MV, Manoil C. 2003. Comprehensive transposon mutant library of Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. U. S. A. 100:14339-14344
38. Quail MA, Otto TD, Gu Y, Harris SR, Skelly TF, McQuillan JA, Swerdlow HP, Oyola SO. 2012. Optimal enzymes for amplifying sequencing libraries. Nat. Methods 9:10-11
39. Baugh L, Gallagher LA, Patrapuvich R, Clifton MC, Gardberg AS, Edwards TE, Armour B, Begley DW, Dieterich SH, Dranow DM, Abendroth J, Fairman JW, Fox D III, Staker BL, Phan I, Gillespie A, Choi R, Nakazawa-Hewitt S, Nguyen MT, Napuli A, Barrett L, Buchko GW, Stacy R, Myler PJ, Stewart LJ, Manoil C, Van Voorhis WC. 2013. Combining functional and structural genomics to sample the essential Burkholderia structome. PLoS One 8:e53851. doi:10.1371/ journal.pone.0053851
40. Nichols RJ, Sen S, Choo YJ, Beltrao P, Zietek M, Chaba R, Lee S, Kazmierczak KM, Lee KJ, Wong A, Shales M, Lovett S, Winkler ME, Krogan NJ, Typas A, Gross CA. 2011. Phenotypic landscape of a bacterial cell. Cell 144:143-156
41. Goo E, Majerczyk CD, An JH, Chandler JR, Seo YS, Ham H, Lim JY, Kim H, Lee B, Jang MS, Greenberg EP, Hwang I. 2012. Bacterial quorum sensing, cooperativity, and anticipation of stationary-phase stress. Proc. Natl. Acad. Sci. U. S. A. 109:19775-19780
42. Chandler JR, Truong TT, Silva PM, Seyedsayamdost MR, Carr G, Radey M, Jacobs MA, Sims EH, Clardy J, Greenberg EP. 2012. Bactobolin resistance is conferred by mutations in the L2 ribosomal protein. mBio 3(6):e00499-12. doi:10.1128/mBio.00499-12
43. Silhavy TJ, Beckwith JR. 1985. Uses of lac fusions for the study of biological problems. Microbiol. Rev. 49:398-418
44. Judson N, Mekalanos JJ. 2000. Transposon-based approaches to identify essential bacterial genes. Trends Microbiol. 8:521-526
45. Siehnel R, Traxler B, An DD, Parsek MR, Schaefer AL, Singh PK. 2010. A unique regulator controls the activation threshold of quorum-regulated genes in Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. U. S. A. 107: 7916-7921
46. Gallagher LA, McKevitt M, Ramage ER, Manoil C. 2008. Genetic dissection of the Francisella novicida restriction barrier. J. Bacteriol. 190: 7830-7837
47. Ferrières L, Hémery G, Nham T, Guérout AM, Mazel D, Beloin C, Ghigo JM. 2010. Silent mischief: bacteriophage Mu insertions contaminate products of Escherichia coli random mutagenesis performed using suicidal transposon delivery plasmids mobilized by broad-host-range RP4 conjugative machinery. J. Bacteriol. 192:6418-6427
48. Brett PJ, Deshazer D, Woods DE. 1997. Characterization of Burkholderia pseudomallei and Burkholderia pseudomallei-like strains. Epidemiol. Infect. 118:137-148
49. Miller VL, Mekalanos JJ. 1988. A novel suicide vector and its use in construction of insertion mutations: osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae requires toxR. J. Bacteriol. 170:2575-2583
50. Gallagher L, Turner C, Ramage E, Manoil C. 2007. Creating recombination-activated genes and sequence-defined mutant libraries us ing transposons. Methods Enzymol. 421:126-140
51. Gallagher LA, Shendure J, Manoil C. 2011. Genome-scale identification of resistance functions in Pseudomonas aeruginosa using Tn-seq. mBio 2(1):e00315-10. doi:10.1128/mBio.00315-10