-
1
-
-
0035030510
-
SH3 domains: Complexity in moderation
-
Mayer, B. J. (2001) SH3 domains: Complexity in moderation J. Cell Sci. 114, 1253-1263
-
(2001)
J. Cell Sci.
, vol.114
, pp. 1253-1263
-
-
Mayer, B.J.1
-
2
-
-
61649112900
-
Revealing a concealed intermediate that forms after the rate-limiting step of refolding of the SH3 domain of PI3 kinase
-
Wani, A. H. and Udgaonkar, J. B. (2009) Revealing a concealed intermediate that forms after the rate-limiting step of refolding of the SH3 domain of PI3 kinase J. Mol. Biol. 387, 348-362
-
(2009)
J. Mol. Biol.
, vol.387
, pp. 348-362
-
-
Wani, A.H.1
Udgaonkar, J.B.2
-
3
-
-
84862162074
-
Four-state folding of a SH3 domain: Salt-induced modulation of the stabilities of the intermediates and native state
-
Dasgupta, A. and Udgaonkar, J. B. (2012) Four-state folding of a SH3 domain: Salt-induced modulation of the stabilities of the intermediates and native state Biochemistry 51, 4723-4734
-
(2012)
Biochemistry
, vol.51
, pp. 4723-4734
-
-
Dasgupta, A.1
Udgaonkar, J.B.2
-
4
-
-
77957752175
-
Evidence for initial non-specific polypeptide chain collapse during the refolding of the SH3 domain of PI3 kinase
-
Dasgupta, A. and Udgaonkar, J. B. (2010) Evidence for initial non-specific polypeptide chain collapse during the refolding of the SH3 domain of PI3 kinase J. Mol. Biol. 403, 430-445
-
(2010)
J. Mol. Biol.
, vol.403
, pp. 430-445
-
-
Dasgupta, A.1
Udgaonkar, J.B.2
-
5
-
-
73949098098
-
Native state dynamics drive the unfolding of the SH3 domain of PI3 kinase at high denaturant concentration
-
Wani, A. H. and Udgaonkar, J. B. (2009) Native state dynamics drive the unfolding of the SH3 domain of PI3 kinase at high denaturant concentration Proc. Natl. Acad. Sci. U.S.A. 106, 20711-20716
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 20711-20716
-
-
Wani, A.H.1
Udgaonkar, J.B.2
-
6
-
-
84867547549
-
Transient non-native burial of a Trp residue occurs initially during the unfolding of a SH3 domain
-
Dasgupta, A. and Udgaonkar, J. B. (2012) Transient non-native burial of a Trp residue occurs initially during the unfolding of a SH3 domain Biochemistry 51, 8226-8234
-
(2012)
Biochemistry
, vol.51
, pp. 8226-8234
-
-
Dasgupta, A.1
Udgaonkar, J.B.2
-
7
-
-
0032570543
-
Folding kinetics of the SH3 domain of PI3 kinase by real-time NMR combined with optical spectroscopy
-
Guijarro, J. I., Morton, C. J., Plaxco, K. W., Campbell, I. D., and Dobson, C. M. (1998) Folding kinetics of the SH3 domain of PI3 kinase by real-time NMR combined with optical spectroscopy J. Mol. Biol. 276, 657-667
-
(1998)
J. Mol. Biol.
, vol.276
, pp. 657-667
-
-
Guijarro, J.I.1
Morton, C.J.2
Plaxco, K.W.3
Campbell, I.D.4
Dobson, C.M.5
-
8
-
-
0034862393
-
Structure is lost incrementally during the unfolding of barstar
-
Lakshmikanth, G. S., Sridevi, K., Krishnamoorthy, G., and Udgaonkar, J. B. (2001) Structure is lost incrementally during the unfolding of barstar Nat. Struct. Biol. 8, 799-804
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 799-804
-
-
Lakshmikanth, G.S.1
Sridevi, K.2
Krishnamoorthy, G.3
Udgaonkar, J.B.4
-
9
-
-
1542358783
-
Increasing stability reduces conformational heterogeneity in a protein folding intermediate ensemble
-
Sridevi, K., Lakshmikanth, G. S., Krishnamoorthy, G., and Udgaonkar, J. B. (2004) Increasing stability reduces conformational heterogeneity in a protein folding intermediate ensemble J. Mol. Biol. 337, 699-711
-
(2004)
J. Mol. Biol.
, vol.337
, pp. 699-711
-
-
Sridevi, K.1
Lakshmikanth, G.S.2
Krishnamoorthy, G.3
Udgaonkar, J.B.4
-
10
-
-
67651087326
-
Continuous dissolution of structure during the unfolding of a small protein
-
Jha, S. K., Dhar, D., Krishnamoorthy, G., and Udgaonkar, J. B. (2009) Continuous dissolution of structure during the unfolding of a small protein Proc. Natl. Acad. Sci. U.S.A. 106, 11113-11118
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 11113-11118
-
-
Jha, S.K.1
Dhar, D.2
Krishnamoorthy, G.3
Udgaonkar, J.B.4
-
11
-
-
0034705335
-
Determination of intramolecular distance distribution during protein folding on the millisecond timescale
-
Ratner, V., Sinev, M., and Haas, E. (2000) Determination of intramolecular distance distribution during protein folding on the millisecond timescale J. Mol. Biol. 299, 1363-1371
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 1363-1371
-
-
Ratner, V.1
Sinev, M.2
Haas, E.3
-
12
-
-
84867258888
-
Fast subdomain folding prior to the global refolding transition of e. Coli adenylate kinase: A double kinetics study
-
Ben Ishay, E., Rahamim, G., Orevi, T., Hazan, G., Amir, D., and Haas, E. (2012) Fast Subdomain Folding Prior to the Global Refolding Transition of E. coli Adenylate Kinase: A Double Kinetics Study J. Mol. Biol. 423, 613-623
-
(2012)
J. Mol. Biol.
, vol.423
, pp. 613-623
-
-
Ben Ishay, E.1
Rahamim, G.2
Orevi, T.3
Hazan, G.4
Amir, D.5
Haas, E.6
-
13
-
-
24044490917
-
Fast collapse but slow formation of secondary structure elements in the refolding transition of E. Coli adenylate kinase
-
Ratner, V., Amir, D., Kahana, E., and Haas, E. (2005) Fast collapse but slow formation of secondary structure elements in the refolding transition of E. coli adenylate kinase J. Mol. Biol. 352, 683-699
-
(2005)
J. Mol. Biol.
, vol.352
, pp. 683-699
-
-
Ratner, V.1
Amir, D.2
Kahana, E.3
Haas, E.4
-
14
-
-
0037094108
-
Mapping the cytochrome C folding landscape
-
Lyubovitsky, J. G., Gray, H. B., and Winkler, J. R. (2002) Mapping the cytochrome C folding landscape J. Am. Chem. Soc. 124, 5481-5485
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 5481-5485
-
-
Lyubovitsky, J.G.1
Gray, H.B.2
Winkler, J.R.3
-
15
-
-
29444453201
-
Snapshots of cytochrome c folding
-
Pletneva, E. V., Gray, H. B., and Winkler, J. R. (2005) Snapshots of cytochrome c folding Proc. Natl. Acad. Sci. U.S.A. 102, 18397-18402
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 18397-18402
-
-
Pletneva, E.V.1
Gray, H.B.2
Winkler, J.R.3
-
16
-
-
33846041173
-
Site-specific collapse dynamics guide the formation of the cytochrome c′ four-helix bundle
-
Kimura, T., Lee, J. C., Gray, H. B., and Winkler, J. R. (2007) Site-specific collapse dynamics guide the formation of the cytochrome c′ four-helix bundle Proc. Natl. Acad. Sci. U.S.A. 104, 117-122
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 117-122
-
-
Kimura, T.1
Lee, J.C.2
Gray, H.B.3
Winkler, J.R.4
-
17
-
-
0024580265
-
A time-resolved fluorescence study of azurin and metalloazurin derivatives
-
Hutnik, C. M. and Szabo, A. G. (1989) A time-resolved fluorescence study of azurin and metalloazurin derivatives Biochemistry 28, 3935-3939
-
(1989)
Biochemistry
, vol.28
, pp. 3935-3939
-
-
Hutnik, C.M.1
Szabo, A.G.2
-
18
-
-
0023356311
-
Picosecond time-resolved fluorescence of ribonuclease T1. A pH and substrate analogue binding study
-
Chen, L. X., Longworth, J. W., and Fleming, G. R. (1987) Picosecond time-resolved fluorescence of ribonuclease T1. A pH and substrate analogue binding study Biophys. J. 51, 865-873
-
(1987)
Biophys. J.
, vol.51
, pp. 865-873
-
-
Chen, L.X.1
Longworth, J.W.2
Fleming, G.R.3
-
19
-
-
0021891880
-
Time-resolved fluorescence of proteins
-
Beechem, J. M. and Brand, L. (1985) Time-resolved fluorescence of proteins Annu. Rev. Biochem. 54, 43-71
-
(1985)
Annu. Rev. Biochem.
, vol.54
, pp. 43-71
-
-
Beechem, J.M.1
Brand, L.2
-
20
-
-
0034813467
-
On the involvement of electron transfer reactions in the fluorescence decay kinetics heterogeneity of proteins
-
Ababou, A. and Bombarda, E. (2001) On the involvement of electron transfer reactions in the fluorescence decay kinetics heterogeneity of proteins Protein Sci. 10, 2102-2113
-
(2001)
Protein Sci.
, vol.10
, pp. 2102-2113
-
-
Ababou, A.1
Bombarda, E.2
-
21
-
-
0347499619
-
Correlating protein structure and protein fluorescence
-
Engelborghs, Y. (2003) Correlating Protein Structure and Protein Fluorescence J. Fluoresc. 13, 9-16
-
(2003)
J. Fluoresc.
, vol.13
, pp. 9-16
-
-
Engelborghs, Y.1
-
22
-
-
0027141463
-
A model for multiexponential tryptophan fluorescence intensity decay in proteins
-
Bajzer, Z. and Prendergast, F. G. (1993) A model for multiexponential tryptophan fluorescence intensity decay in proteins Biophys. J. 65, 2313-2323
-
(1993)
Biophys. J.
, vol.65
, pp. 2313-2323
-
-
Bajzer, Z.1
Prendergast, F.G.2
-
23
-
-
0032516433
-
Toward understanding tryptophan fluorescence in proteins
-
Chen, Y. and Barkley, M. D. (1998) Toward understanding tryptophan fluorescence in proteins Biochemistry 37, 9976-9982
-
(1998)
Biochemistry
, vol.37
, pp. 9976-9982
-
-
Chen, Y.1
Barkley, M.D.2
-
24
-
-
0027303079
-
Time-resolved fluorescence of the single tryptophan of Bacillus stearothermophilus phosphofructokinase
-
Kim, S. J., Chowdhury, F. N., Stryjewski, W., Younathan, E. S., Russo, P. S., and Barkley, M. D. (1993) Time-resolved fluorescence of the single tryptophan of Bacillus stearothermophilus phosphofructokinase Biophys. J. 65, 215-226
-
(1993)
Biophys. J.
, vol.65
, pp. 215-226
-
-
Kim, S.J.1
Chowdhury, F.N.2
Stryjewski, W.3
Younathan, E.S.4
Russo, P.S.5
Barkley, M.D.6
-
25
-
-
0030991351
-
Conformational heterogeneity in crystalline proteins: Time-resolved fluorescence studies
-
Dahms, T. E. S. and Szabo, A. G. (1997) Conformational heterogeneity in crystalline proteins: Time-resolved fluorescence studies Methods Enzymol. 278, 202-221
-
(1997)
Methods Enzymol.
, vol.278
, pp. 202-221
-
-
Dahms, T.E.S.1
Szabo, A.G.2
-
26
-
-
0037036745
-
Intramolecular quenching of tryptophan fluorescence by the peptide bond in cyclic hexapeptides
-
Adams, P. D., Chen, Y., Ma, K., Zagorski, M. G., Sönnichsen, F. D., McLaughlin, M. L., and Barkley, M. D. (2002) Intramolecular quenching of tryptophan fluorescence by the peptide bond in cyclic hexapeptides J. Am. Chem. Soc. 124, 9278-9286
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 9278-9286
-
-
Adams, P.D.1
Chen, Y.2
Ma, K.3
Zagorski, M.G.4
Sönnichsen, F.D.5
McLaughlin, M.L.6
Barkley, M.D.7
-
27
-
-
34347218159
-
Conformational dynamics and ensembles in protein folding
-
Muñoz, V. (2007) Conformational dynamics and ensembles in protein folding Annu. Rev. Biophys. Biomol. Struct. 36, 395-412
-
(2007)
Annu. Rev. Biophys. Biomol. Struct.
, vol.36
, pp. 395-412
-
-
Muñoz, V.1
-
28
-
-
0035930026
-
Slow dynamics in folded and unfolded states of an SH3 domain
-
Tollinger, M., Skrynnikov, N. R., Mulder, F. A., Forman-Kay, J. D., and Kay, L. E. (2001) Slow dynamics in folded and unfolded states of an SH3 domain J. Am. Chem. Soc. 123, 11341-11352
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 11341-11352
-
-
Tollinger, M.1
Skrynnikov, N.R.2
Mulder, F.A.3
Forman-Kay, J.D.4
Kay, L.E.5
-
29
-
-
78751678107
-
Quantifying heterogeneity and conformational dynamics from single molecule FRET of diffusing molecules: Recurrence analysis of single particles (RASP)
-
Hoffmann, A., Nettels, D., Clark, J., Borgia, A., Radford, S. E., Clarke, J., and Schuler, B. (2011) Quantifying heterogeneity and conformational dynamics from single molecule FRET of diffusing molecules: Recurrence analysis of single particles (RASP) Phys. Chem. Chem. Phys. 13, 1857-1871
-
(2011)
Phys. Chem. Chem. Phys.
, vol.13
, pp. 1857-1871
-
-
Hoffmann, A.1
Nettels, D.2
Clark, J.3
Borgia, A.4
Radford, S.E.5
Clarke, J.6
Schuler, B.7
-
30
-
-
14044264279
-
The kinetics of conformational fluctuations in an unfolded protein measured by fluorescence methods
-
Chattopadhyay, K., Elson, E. L., and Frieden, C. (2005) The kinetics of conformational fluctuations in an unfolded protein measured by fluorescence methods Proc. Natl. Acad. Sci. U.S.A. 102, 2385-2389
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 2385-2389
-
-
Chattopadhyay, K.1
Elson, E.L.2
Frieden, C.3
-
31
-
-
0023357309
-
Interpretation of fluorescence decays in proteins using continuous lifetime distributions
-
Alcala, J. R., Gratton, E., and Prendergast, F. G. (1987) Interpretation of fluorescence decays in proteins using continuous lifetime distributions Biophys. J. 51, 925-936
-
(1987)
Biophys. J.
, vol.51
, pp. 925-936
-
-
Alcala, J.R.1
Gratton, E.2
Prendergast, F.G.3
-
32
-
-
0032952722
-
Apohorseradish peroxidase unfolding and refolding: Intrinsic tryptophan fluorescence studies
-
Lasagna, M., Gratton, E., Jameson, D. M., and Brunet, J. E. (1999) Apohorseradish peroxidase unfolding and refolding: Intrinsic tryptophan fluorescence studies Biophys. J. 76, 443-450
-
(1999)
Biophys. J.
, vol.76
, pp. 443-450
-
-
Lasagna, M.1
Gratton, E.2
Jameson, D.M.3
Brunet, J.E.4
-
33
-
-
0028925439
-
Protein fluorescence decay: Discrete components or distribution of lifetimes? Really no way out of the dilemma?
-
Vix, A. and Lami, H. (1995) Protein fluorescence decay: Discrete components or distribution of lifetimes? Really no way out of the dilemma? Biophys. J. 68, 1145-1151
-
(1995)
Biophys. J.
, vol.68
, pp. 1145-1151
-
-
Vix, A.1
Lami, H.2
-
34
-
-
0001464493
-
Analyzing the distribution of decay constants in pulse-fluorimetry using the maximum entropy method
-
Livesey, A. K. and Brochon, J. C. (1987) Analyzing the distribution of decay constants in pulse-fluorimetry using the maximum entropy method Biophys. J. 52, 693-706
-
(1987)
Biophys. J.
, vol.52
, pp. 693-706
-
-
Livesey, A.K.1
Brochon, J.C.2
-
35
-
-
0030087307
-
Analysis of fluorescence decay by the maximum entropy method: Influence of noise and analysis parameters on the width of the distribution of lifetimes
-
Swaminathan, R. and Periasamy, N. (1996) Analysis of fluorescence decay by the maximum entropy method: Influence of noise and analysis parameters on the width of the distribution of lifetimes Proc.-Indian Acad. Sci., Chem. Sci. 108, 39-49
-
(1996)
Proc. - Indian Acad. Sci., Chem. Sci.
, vol.108
, pp. 39-49
-
-
Swaminathan, R.1
Periasamy, N.2
-
36
-
-
0027130836
-
Flavin dynamics in oxidized Clostridium beijerinckii flavodoxin as assessed by time-resolved polarized fluorescence
-
Leenders, R., Van Hoek, A., Van Iersel, M., Veeger, C., and Visser, A. J. (1993) Flavin dynamics in oxidized Clostridium beijerinckii flavodoxin as assessed by time-resolved polarized fluorescence Eur. J. Biochem. 218, 977-984
-
(1993)
Eur. J. Biochem.
, vol.218
, pp. 977-984
-
-
Leenders, R.1
Van Hoek, A.2
Van Iersel, M.3
Veeger, C.4
Visser, A.J.5
-
37
-
-
79958236206
-
Reduced fluorescence lifetime heterogeneity of 5-fluorotryptophan in comparison to tryptophan in proteins: Implication for resonance energy transfer experiments
-
Sarkar, S. S., Udgaonkar, J. B., and Krishnamoorthy, G. (2011) Reduced fluorescence lifetime heterogeneity of 5-fluorotryptophan in comparison to tryptophan in proteins: Implication for resonance energy transfer experiments J. Phys. Chem. B 115, 7479-7486
-
(2011)
J. Phys. Chem. B
, vol.115
, pp. 7479-7486
-
-
Sarkar, S.S.1
Udgaonkar, J.B.2
Krishnamoorthy, G.3
-
38
-
-
81155127497
-
Contribution of disulfide bonds to stability, folding, and amyloid fibril formation: The PI3-SH3 domain case
-
Graña-Montes, R., de Groot, N. S., Castillo, V., Sancho, J., Velazquez-Campoy, A., and Ventura, S. (2012) Contribution of disulfide bonds to stability, folding, and amyloid fibril formation: The PI3-SH3 domain case Antioxid. Redox Signaling 16, 1-15
-
(2012)
Antioxid. Redox Signaling
, vol.16
, pp. 1-15
-
-
Graña-Montes, R.1
De Groot, N.S.2
Castillo, V.3
Sancho, J.4
Velazquez-Campoy, A.5
Ventura, S.6
-
39
-
-
0027191192
-
Solution structure and ligand-binding site of the SH3 domain of the p85 α subunit of phosphatidylinositol 3-kinase
-
Booker, G. W., Gout, I., Downing, A. K., Driscoll, P. C., Boyd, J., Waterfield, M. D., and Campbell, I. D. (1993) Solution structure and ligand-binding site of the SH3 domain of the p85 α subunit of phosphatidylinositol 3-kinase Cell 73, 813-822
-
(1993)
Cell
, vol.73
, pp. 813-822
-
-
Booker, G.W.1
Gout, I.2
Downing, A.K.3
Driscoll, P.C.4
Boyd, J.5
Waterfield, M.D.6
Campbell, I.D.7
-
41
-
-
0027985340
-
Similarity of fluorescence lifetime distributions for single tryptophan proteins in the random coil state
-
Swaminathan, R., Krishnamoorthy, G., and Periasamy, N. (1994) Similarity of fluorescence lifetime distributions for single tryptophan proteins in the random coil state Biophys. J. 67, 2013-2023
-
(1994)
Biophys. J.
, vol.67
, pp. 2013-2023
-
-
Swaminathan, R.1
Krishnamoorthy, G.2
Periasamy, N.3
-
42
-
-
0027378450
-
Resolution of the fluorescence equilibrium unfolding profile of trp aporepressor using single tryptophan mutants
-
Royer, C. A., Mann, C. J., and Matthews, C. R. (1993) Resolution of the fluorescence equilibrium unfolding profile of trp aporepressor using single tryptophan mutants Protein Sci. 2, 1844-1852
-
(1993)
Protein Sci.
, vol.2
, pp. 1844-1852
-
-
Royer, C.A.1
Mann, C.J.2
Matthews, C.R.3
-
43
-
-
0037424614
-
Computational simulation of the statistical properties of unfolded proteins
-
Goldenberg, D. P. (2003) Computational Simulation of the Statistical Properties of Unfolded Proteins J. Mol. Biol. 326, 1615-1633
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 1615-1633
-
-
Goldenberg, D.P.1
-
44
-
-
33646171099
-
Characterization of intra-molecular distances and site-specific dynamics in chemically unfolded barstar: Evidence for denaturant-dependent non-random structure
-
Saxena, A. M., Udgaonkar, J. B., and Krishnamoorthy, G. (2006) Characterization of intra-molecular distances and site-specific dynamics in chemically unfolded barstar: Evidence for denaturant-dependent non-random structure J. Mol. Biol. 359, 174-189
-
(2006)
J. Mol. Biol.
, vol.359
, pp. 174-189
-
-
Saxena, A.M.1
Udgaonkar, J.B.2
Krishnamoorthy, G.3
-
45
-
-
0028802181
-
Initial hydrophobic collapse in the folding of barstar
-
Agashe, V. R., Shastry, M. C., and Udgaonkar, J. B. (1995) Initial hydrophobic collapse in the folding of barstar Nature 377, 754-757
-
(1995)
Nature
, vol.377
, pp. 754-757
-
-
Agashe, V.R.1
Shastry, M.C.2
Udgaonkar, J.B.3
-
46
-
-
0001440492
-
Molten globule-like conformation of barstar: A study by fluorescence dynamics
-
Swaminathan, R., Periasamy, N., Udgaonkar, J. B., and Krishnamoorthy, G. (1994) Molten Globule-like Conformation of Barstar: A Study by Fluorescence Dynamics J. Phys. Chem. 98, 9270-9278
-
(1994)
J. Phys. Chem.
, vol.98
, pp. 9270-9278
-
-
Swaminathan, R.1
Periasamy, N.2
Udgaonkar, J.B.3
Krishnamoorthy, G.4
-
47
-
-
0029975396
-
Motional dynamics of a buried tryptophan reveals the presence of partially structured forms during denaturation of barstar
-
Swaminathan, R., Nath, U., Udgaonkar, J. B., Periasamy, N., and Krishnamoorthy, G. (1996) Motional dynamics of a buried tryptophan reveals the presence of partially structured forms during denaturation of barstar Biochemistry 35, 9150-9157
-
(1996)
Biochemistry
, vol.35
, pp. 9150-9157
-
-
Swaminathan, R.1
Nath, U.2
Udgaonkar, J.B.3
Periasamy, N.4
Krishnamoorthy, G.5
-
49
-
-
33746689786
-
Tryptophan rotamers as evidenced by X-ray, fluorescence lifetimes, and molecular dynamics modeling
-
Moors, S. L. C., Hellings, M., De Maeyer, M., Engelborghs, Y., and Ceulemans, A. (2006) Tryptophan rotamers as evidenced by X-ray, fluorescence lifetimes, and molecular dynamics modeling Biophys. J. 91, 816-823
-
(2006)
Biophys. J.
, vol.91
, pp. 816-823
-
-
Moors, S.L.C.1
Hellings, M.2
De Maeyer, M.3
Engelborghs, Y.4
Ceulemans, A.5
-
50
-
-
83555177247
-
Tryptophan side chain conformers monitored by NMR and time-resolved fluorescence spectroscopies
-
Julien, O., Wang, G., Jonckheer, A., Engelborghs, Y., and Sykes, B. D. (2012) Tryptophan side chain conformers monitored by NMR and time-resolved fluorescence spectroscopies Proteins 80, 239-245
-
(2012)
Proteins
, vol.80
, pp. 239-245
-
-
Julien, O.1
Wang, G.2
Jonckheer, A.3
Engelborghs, Y.4
Sykes, B.D.5
-
51
-
-
0042823438
-
The dead-end elimination method, tryptophan rotamers, and fluorescence lifetimes
-
Hellings, M., De Maeyer, M., Verheyden, S., Hao, Q., Van Damme, E. J. M., Peumans, W. J., and Engelborghs, Y. (2003) The Dead-End Elimination Method, Tryptophan Rotamers, and Fluorescence Lifetimes Biophys. J. 85, 1894-1902
-
(2003)
Biophys. J.
, vol.85
, pp. 1894-1902
-
-
Hellings, M.1
De Maeyer, M.2
Verheyden, S.3
Hao, Q.4
Van Damme, E.J.M.5
Peumans, W.J.6
Engelborghs, Y.7
-
52
-
-
0001307623
-
A Reversible "dark State" Mechanism for Complexity of the Fluorescence of Tryptophan in Proteins
-
Hudson, B. S., Huston, J. M., and Soto-Campos, G. (1999) A Reversible "Dark State" Mechanism for Complexity of the Fluorescence of Tryptophan in Proteins J. Phys. Chem. A 103, 2227-2234
-
(1999)
J. Phys. Chem. A
, vol.103
, pp. 2227-2234
-
-
Hudson, B.S.1
Huston, J.M.2
Soto-Campos, G.3
-
53
-
-
0027958069
-
The use of fluorescence methods to monitor unfolding transitions in proteins
-
Eftink, M. R. (1994) The use of fluorescence methods to monitor unfolding transitions in proteins Biophys. J. 66, 482-501
-
(1994)
Biophys. J.
, vol.66
, pp. 482-501
-
-
Eftink, M.R.1
-
54
-
-
34250845865
-
Dynamics of tryptophan in the histidine-containing phosphocarrier protein of Streptomyces coelicolor: Evidence of multistate equilibrium unfolding
-
Poveda, J. A., Fernández-Ballester, G., Prieto, M., and Neira, J. L. (2007) Dynamics of tryptophan in the histidine-containing phosphocarrier protein of Streptomyces coelicolor: Evidence of multistate equilibrium unfolding Biochemistry 46, 7252-7260
-
(2007)
Biochemistry
, vol.46
, pp. 7252-7260
-
-
Poveda, J.A.1
Fernández-Ballester, G.2
Prieto, M.3
Neira, J.L.4
-
55
-
-
0034687150
-
Nanosecond dynamics of the single tryptophan reveals multi-state equilibrium unfolding of protein GB1
-
Tcherkasskaya, O., Knutson, J. R., Bowley, S. A., Frank, M. K., and Gronenborn, A. M. (2000) Nanosecond dynamics of the single tryptophan reveals multi-state equilibrium unfolding of protein GB1 Biochemistry 39, 11216-11226
-
(2000)
Biochemistry
, vol.39
, pp. 11216-11226
-
-
Tcherkasskaya, O.1
Knutson, J.R.2
Bowley, S.A.3
Frank, M.K.4
Gronenborn, A.M.5
-
56
-
-
65249086776
-
Time-resolved fluorescence resonance energy transfer study shows a compact denatured state of the B domain of protein A
-
Huang, F., Lerner, E., Sato, S., Amir, D., Haas, E., and Fersht, A. R. (2009) Time-resolved fluorescence resonance energy transfer study shows a compact denatured state of the B domain of protein A Biochemistry 48, 3468-3476
-
(2009)
Biochemistry
, vol.48
, pp. 3468-3476
-
-
Huang, F.1
Lerner, E.2
Sato, S.3
Amir, D.4
Haas, E.5
Fersht, A.R.6
-
57
-
-
78751591016
-
Segmental conformational disorder and dynamics in the intrinsically disordered protein α-synuclein and its chain length dependence
-
Grupi, A. and Haas, E. (2011) Segmental conformational disorder and dynamics in the intrinsically disordered protein α-synuclein and its chain length dependence J. Mol. Biol. 405, 1267-1283
-
(2011)
J. Mol. Biol.
, vol.405
, pp. 1267-1283
-
-
Grupi, A.1
Haas, E.2
-
58
-
-
27344452885
-
Single-molecule Forster resonance energy transfer study of protein dynamics under denaturing conditions
-
Kuzmenkina, E. V., Heyes, C. D., and Nienhaus, G. U. (2005) Single-molecule Forster resonance energy transfer study of protein dynamics under denaturing conditions Proc. Natl. Acad. Sci. U.S.A. 102, 15471-15476
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 15471-15476
-
-
Kuzmenkina, E.V.1
Heyes, C.D.2
Nienhaus, G.U.3
-
59
-
-
26244466045
-
Dependence of the size of the initially collapsed form during the refolding of barstar on denaturant concentration: Evidence for a continuous transition
-
Sinha, K. K. and Udgaonkar, J. B. (2005) Dependence of the size of the initially collapsed form during the refolding of barstar on denaturant concentration: Evidence for a continuous transition J. Mol. Biol. 353, 704-718
-
(2005)
J. Mol. Biol.
, vol.353
, pp. 704-718
-
-
Sinha, K.K.1
Udgaonkar, J.B.2
-
60
-
-
0000321022
-
Polymer collapse
-
Williams, C., Brochard, F., and Frisch, H. L. (1981) Polymer Collapse Annu. Rev. Phys. Chem. 32, 433-451
-
(1981)
Annu. Rev. Phys. Chem.
, vol.32
, pp. 433-451
-
-
Williams, C.1
Brochard, F.2
Frisch, H.L.3
-
61
-
-
33746823043
-
Coil-globule transition in the denatured state of a small protein
-
Sherman, E. and Haran, G. (2006) Coil-globule transition in the denatured state of a small protein Proc. Natl. Acad. Sci. U.S.A. 103, 11539-11543
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 11539-11543
-
-
Sherman, E.1
Haran, G.2
-
62
-
-
84867048390
-
Polymer scaling laws of unfolded and intrinsically disordered proteins quantified with single-molecule spectroscopy
-
Hofmann, H., Soranno, A., Borgia, A., Gast, K., Nettels, D., and Schuler, B. (2012) Polymer scaling laws of unfolded and intrinsically disordered proteins quantified with single-molecule spectroscopy Proc. Natl. Acad. Sci. U.S.A. 109, 16155-16160
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 16155-16160
-
-
Hofmann, H.1
Soranno, A.2
Borgia, A.3
Gast, K.4
Nettels, D.5
Schuler, B.6
-
63
-
-
67749142097
-
Protein folding, protein collapse, and Tanford's transfer model: Lessons from single-molecule FRET
-
Ziv, G. and Haran, G. (2009) Protein folding, protein collapse, and Tanford's transfer model: Lessons from single-molecule FRET J. Am. Chem. Soc. 131, 2942-2947
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 2942-2947
-
-
Ziv, G.1
Haran, G.2
-
64
-
-
0032734515
-
Experiment and theory highlight role of native state topology in SH3 folding
-
Riddle, D. S., Grantcharova, V. P., Santiago, J. V., Alm, E., Ruczinski, I., and Baker, D. (1999) Experiment and theory highlight role of native state topology in SH3 folding Nat. Struct. Biol. 6, 1016-1024
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 1016-1024
-
-
Riddle, D.S.1
Grantcharova, V.P.2
Santiago, J.V.3
Alm, E.4
Ruczinski, I.5
Baker, D.6
-
65
-
-
84863276609
-
UCSF Chimera, MODELLER, and IMP: An integrated modeling system
-
Yang, Z., Lasker, K., Schneidman-Duhovny, D., Webb, B., Huang, C. C., Pettersen, E. F., Goddard, T. D., Meng, E. C., Sali, A., and Ferrin, T. E. (2012) UCSF Chimera, MODELLER, and IMP: An integrated modeling system J. Struct. Biol. 179, 269-278
-
(2012)
J. Struct. Biol.
, vol.179
, pp. 269-278
-
-
Yang, Z.1
Lasker, K.2
Schneidman-Duhovny, D.3
Webb, B.4
Huang, C.C.5
Pettersen, E.F.6
Goddard, T.D.7
Meng, E.C.8
Sali, A.9
Ferrin, T.E.10
|