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Volumn 447, Issue 1, 2014, Pages 156-161

DNA microarrays on ultraviolet-modified surfaces for speciation of bacteria

Author keywords

DNA microarray; Surface modification; UV

Indexed keywords

ALDEHYDES; BIOCHIPS; CHLORINE COMPOUNDS; CLOSTRIDIUM; OLIGONUCLEOTIDES; SURFACE TREATMENT; X RAY PHOTOELECTRON SPECTROSCOPY;

EID: 84891513768     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2013.10.033     Document Type: Article
Times cited : (3)

References (39)
  • 1
    • 15444369528 scopus 로고    scopus 로고
    • 16S rRNA gene-based oligonucleotide microarray for environmental monitoring of the betaproteobacterial order Rhodocyclales
    • DOI 10.1128/AEM.71.3.1373-1386.2005
    • A. Loy, C. Schulz, S. Lucker, A. Schopfer-Wendels, K. Stoecker, C. Baranyi, A. Lehner, and M. Wagner 16S rRNA gene-based oligonucleotide microarray for environmental monitoring of the Betaproteobacterial order "Rhodocyclales" Appl. Environ. Microbiol. 71 2005 1373 1386 (Pubitemid 40396676)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.3 , pp. 1373-1386
    • Loy, A.1    Schulz, C.2    Lucker, S.3    Schopfer-Wendels, A.4    Stoecker, K.5    Baranyi, C.6    Lehner, A.7    Wagner, M.8
  • 2
    • 0036166439 scopus 로고    scopus 로고
    • Tumor classification by partial least squares using microarray gene expression data
    • D.V. Nguyen, and D.M. Rocke Tumor classification by partial least squares using microarray gene expression data Bioinformatics 18 2002 39 50 (Pubitemid 34145030)
    • (2002) Bioinformatics , vol.18 , Issue.1 , pp. 39-50
    • Nguyen, D.V.1    Rocke, D.M.2
  • 3
    • 0029852580 scopus 로고    scopus 로고
    • Use of a cDNA microarray to analyse gene expression patterns in human cancer
    • D. Joseph, P. Lolita, O.B. Patrick, and L. Michael Use of a cDNA microarray to analyse gene expression patterns in human cancer Nat. Genet. 14 1996 457 460
    • (1996) Nat. Genet. , vol.14 , pp. 457-460
    • Joseph, D.1    Lolita, P.2    Patrick, O.B.3    Michael, L.4
  • 6
    • 0032804249 scopus 로고    scopus 로고
    • Performance of the Affymetrix GeneChip HIV PRT 440 platform for antiretroviral drug resistance genotyping of human immunodeficiency virus type 1 clades and viral isolates with length polymorphisms
    • M. Vahey, M.E. Nau, S. Barrick, J.D. Cooley, R. Sawyer, A.A. Sleeker, P. Vickerman, S. Bloor, B. Larder, N.L. Michael, and S.A. Wegner Performance of the Affymetrix GeneChip HIV PRT 440 platform for antiretroviral drug resistance genotyping of human immunodeficiency virus type 1 clades and viral isolates with length polymorphisms J. Clin. Microbiol. 37 1999 2533 2537 (Pubitemid 29337273)
    • (1999) Journal of Clinical Microbiology , vol.37 , Issue.8 , pp. 2533-2537
    • Vahey, M.1    Nau, M.E.2    Barrick, S.3    Cooley, J.D.4    Sawyer, R.5    Sleeker, A.A.6    Vickerman, P.7    Bloor, S.8    Larder, B.9    Michael, N.L.10    Wegner, S.A.11
  • 7
    • 0034098919 scopus 로고    scopus 로고
    • Technical assessment of the affymetrix yeast expression genechip YE6100 platform in a heterologous model of genes that confer resistance to antimalarial drugs in yeast
    • M.E. Nau, L.R. Emerson, R.K. Martin, D.E. Kyle, D.F. Wirth, and M. Vahey Technical assessment of the Affymetrix yeast expression GeneChip YE6100 platform in a heterologous model of genes that confer resistance to antimalarial drugs in yeast J. Clin. Microbiol. 38 2000 1901 1908 (Pubitemid 30253935)
    • (2000) Journal of Clinical Microbiology , vol.38 , Issue.5 , pp. 1901-1908
    • Nau, M.E.1    Emerson, L.R.2    Martin, R.K.3    Kyle, D.E.4    Wirth, D.F.5    Vahey, M.6
  • 13
    • 83255186886 scopus 로고    scopus 로고
    • Use of a DNA microarray for detection and identification of bacterial pathogens associated with fishery products
    • B. Cao, R. Li, S. Xiong, F. Yao, X. Liu, M. Wang, L. Feng, and L. Wang Use of a DNA microarray for detection and identification of bacterial pathogens associated with fishery products Appl. Environ. Microbiol. 77 2011 8219 8225
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 8219-8225
    • Cao, B.1    Li, R.2    Xiong, S.3    Yao, F.4    Liu, X.5    Wang, M.6    Feng, L.7    Wang, L.8
  • 14
    • 82955234146 scopus 로고    scopus 로고
    • Microarray-based analysis of IncA/C plasmid-associated genes from multidrug-resistant Salmonella enterica
    • R.L. Lindsey, J.G. Frye, P.J. Fedorka-Cray, and R.J. Meinersmann Microarray-based analysis of IncA/C plasmid-associated genes from multidrug-resistant Salmonella enterica Appl. Environ. Microbiol. 77 2011 6991 6999
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 6991-6999
    • Lindsey, R.L.1    Frye, J.G.2    Fedorka-Cray, P.J.3    Meinersmann, R.J.4
  • 15
    • 78149449833 scopus 로고    scopus 로고
    • Use of cellular CRISPR (clusters of regularly interspaced short palindromic repeats) spacer-based microarrays for detection of viruses in environmental samples
    • J.C. Snyder, M.M. Bateson, M. Lavin, and M.J. Young Use of cellular CRISPR (clusters of regularly interspaced short palindromic repeats) spacer-based microarrays for detection of viruses in environmental samples Appl. Environ. Microbiol. 76 2010 7251 7258
    • (2010) Appl. Environ. Microbiol. , vol.76 , pp. 7251-7258
    • Snyder, J.C.1    Bateson, M.M.2    Lavin, M.3    Young, M.J.4
  • 16
    • 19544393338 scopus 로고    scopus 로고
    • Spotting optimization for oligo microarrays on aldehyde-glass
    • DOI 10.1016/j.ab.2005.03.029, PII S0003269705002277
    • E.D. Dawson, A.E. Reppert, K.L. Rowlen, and L.R. Kuck Spotting optimization for oligo microarrays on aldehyde-glass Anal. Biochem. 341 2005 352 360 (Pubitemid 40731492)
    • (2005) Analytical Biochemistry , vol.341 , Issue.2 , pp. 352-360
    • Dawson, E.D.1    Reppert, A.E.2    Rowlen, K.L.3    Kuck, L.R.4
  • 17
    • 34447301225 scopus 로고    scopus 로고
    • Performance characteristics of 65-mer oligonucleotide microarrays
    • DOI 10.1016/j.ab.2007.05.010, PII S0003269707003107
    • M.Y. Lee, C.C. Xiang, J.M. Trent, and M.L. Bittner Performance characteristics of 65-mer oligonucleotide microarrays Anal. Biochem. 368 2007 70 78 (Pubitemid 47058430)
    • (2007) Analytical Biochemistry , vol.368 , Issue.1 , pp. 70-78
    • Lee, M.1    Xiang, C.C.2    Trent, J.M.3    Bittner, M.L.4
  • 18
    • 3242730413 scopus 로고    scopus 로고
    • DNA microarray analysis of predominant human intestinal bacteria in fecal samples
    • DOI 10.1016/j.mcp.2004.03.002, PII S0890850804000283
    • R.F. Wang, M.L. Beggs, B.D. Erickson, and C.E. Cerniglia DNA microarray analysis of predominant human intestinal bacteria in fecal samples Mol. Cell. Probes 18 2004 223 234 (Pubitemid 38951015)
    • (2004) Molecular and Cellular Probes , vol.18 , Issue.4 , pp. 223-234
    • Wang, R.-F.1    Beggs, M.L.2    Erickson, B.D.3    Cerniglia, C.E.4
  • 19
    • 34848874273 scopus 로고    scopus 로고
    • Direct immobilization of DNA oligomers onto the amine-functionalized glass surface for DNA microarray fabrication through the activation-free reaction of oxanine
    • S.P. Pack, N.K. Kamisetty, M. Nonogawa, K.C. Devarayapalli, K. Ohtani, K. Yamada, Y. Yoshida, T. Kodaki, and K. Makino Direct immobilization of DNA oligomers onto the amine-functionalized glass surface for DNA microarray fabrication through the activation-free reaction of oxanine Nucleic Acids Res. 35 2007 e110
    • (2007) Nucleic Acids Res. , vol.35 , pp. 110
    • Pack, S.P.1    Kamisetty, N.K.2    Nonogawa, M.3    Devarayapalli, K.C.4    Ohtani, K.5    Yamada, K.6    Yoshida, Y.7    Kodaki, T.8    Makino, K.9
  • 20
    • 0141497994 scopus 로고    scopus 로고
    • Synergistic effects of epoxy- and amine-silanes on microarray DNA immobilization and hybridization
    • S.K. Chiu, M. Hsu, W.C. Ku, C.Y. Tu, Y.T. Tseng, W.K. Lau, R.Y. Yan, J.T. Ma, and C.M. Tzeng Synergistic effects of epoxy- and amine-silanes on microarray DNA immobilization and hybridization Biochem. J. 374 2003 625 632
    • (2003) Biochem. J. , vol.374 , pp. 625-632
    • Chiu, S.K.1    Hsu, M.2    Ku, W.C.3    Tu, C.Y.4    Tseng, Y.T.5    Lau, W.K.6    Yan, R.Y.7    Ma, J.T.8    Tzeng, C.M.9
  • 21
    • 34249752029 scopus 로고    scopus 로고
    • Chemical modifications of inert organic monolayers with oxygen plasma for biosensor applications
    • C.Y. Xue, and K.L. Yang Chemical modifications of inert organic monolayers with oxygen plasma for biosensor applications Langmuir 23 2007 5831 5835
    • (2007) Langmuir , vol.23 , pp. 5831-5835
    • Xue, C.Y.1    Yang, K.L.2
  • 22
    • 60849104812 scopus 로고    scopus 로고
    • Optical imaging of surface-immobilized oligonucleotide probes on DNA microarrays using liquid crystals
    • S.L. Lai, S. Huang, X. Bi, and K.L. Yang Optical imaging of surface-immobilized oligonucleotide probes on DNA microarrays using liquid crystals Langmuir 25 2009 311 316
    • (2009) Langmuir , vol.25 , pp. 311-316
    • Lai, S.L.1    Huang, S.2    Bi, X.3    Yang, K.L.4
  • 23
    • 33947437465 scopus 로고
    • Reduction of aldehydes, ketones, and acid chlorides by sodium borohydride
    • S.W. Chaikin, and W.G. Brown Reduction of aldehydes, ketones, and acid chlorides by sodium borohydride J. Am. Chem. Soc. 71 1949 122 125
    • (1949) J. Am. Chem. Soc. , vol.71 , pp. 122-125
    • Chaikin, S.W.1    Brown, W.G.2
  • 24
    • 84873799110 scopus 로고
    • Studies on lysogenesis: I. The mode of phage liberation by lysogenic Escherichia coli
    • G. Bertani Studies on lysogenesis: I. The mode of phage liberation by lysogenic Escherichia coli J. Bacteriol. 62 1951 293 300
    • (1951) J. Bacteriol. , vol.62 , pp. 293-300
    • Bertani, G.1
  • 25
    • 80052775575 scopus 로고    scopus 로고
    • A mesophilic Clostridium species that produces butanol from monosaccharides and hydrogen from polysaccharides
    • S.E. Bramono, Y.S. Lam, S.L. Ong, and J. He A mesophilic Clostridium species that produces butanol from monosaccharides and hydrogen from polysaccharides Bioresour. Technol. 102 2011 9558 9563
    • (2011) Bioresour. Technol. , vol.102 , pp. 9558-9563
    • Bramono, S.E.1    Lam, Y.S.2    Ong, S.L.3    He, J.4
  • 26
    • 0035881206 scopus 로고    scopus 로고
    • Expression microarray hybridization kinetics depend on length of the immobilized DNA but are independent of immobilization substrate
    • DOI 10.1006/abio.2001.5212
    • B.A. Stillman, and J.L. Tonkinson Expression microarray hybridization kinetics depend on length of the immobilized DNA but are independent of immobilization substrate Anal. Biochem. 295 2001 149 157 (Pubitemid 32756968)
    • (2001) Analytical Biochemistry , vol.295 , Issue.2 , pp. 149-157
    • Stillman, B.A.1    Tonkinson, J.L.2
  • 27
    • 33644943439 scopus 로고    scopus 로고
    • Comparison of different labeling methods for the production of labeled target DNA for microarray hybridization
    • I.H. Franke-Whittle, S.H. Klammer, S. Mayrhofer, and H. Insam Comparison of different labeling methods for the production of labeled target DNA for microarray hybridization J. Microbiol. Methods 65 2006 117 126
    • (2006) J. Microbiol. Methods , vol.65 , pp. 117-126
    • Franke-Whittle, I.H.1    Klammer, S.H.2    Mayrhofer, S.3    Insam, H.4
  • 28
    • 77949328068 scopus 로고    scopus 로고
    • UV-defined flat PDMS stamps suitable for microcontact printing
    • C.Y. Xue, S.Y. Chin, S.A. Khan, and K.L. Yang UV-defined flat PDMS stamps suitable for microcontact printing Langmuir 26 2010 3739 3743
    • (2010) Langmuir , vol.26 , pp. 3739-3743
    • Xue, C.Y.1    Chin, S.Y.2    Khan, S.A.3    Yang, K.L.4
  • 29
    • 0031680087 scopus 로고    scopus 로고
    • Plasma reactions of self-assembled monolayers to model oxygen atom effects on polymers
    • F.M. Elms, and G.A. George Plasma reactions of self-assembled monolayers to model oxygen atom effects on polymers Polym. Adv. Technol. 9 1998 31 37 (Pubitemid 128605481)
    • (1998) Polymers for Advanced Technologies , vol.9 , Issue.1 , pp. 31-37
    • Elms, F.M.1    George, G.A.2
  • 30
    • 0032136778 scopus 로고    scopus 로고
    • Plasma treatment of polymers: The effects of energy transfer from an argon plasma on the surface chemistry of polystyrene, and polypropylene. A high-energy resolution X-ray photoelectron spectroscopy study
    • R.M. France, and R.D. Short Plasma treatment of polymers: the effects of energy transfer from an argon plasma on the surface chemistry of polystyrene, and polypropylene: a high-energy resolution X-ray photoelectron spectroscopy study Langmuir 14 1998 4827 4835 (Pubitemid 128599696)
    • (1998) Langmuir , vol.14 , Issue.17 , pp. 4827-4835
    • France, R.M.1    Short, R.D.2
  • 31
    • 79955401184 scopus 로고    scopus 로고
    • Improving protein transfer efficiency and selectivity in affinity contact printing by using UV-modified surfaces
    • C.-H. Chen, and K.-L. Yang Improving protein transfer efficiency and selectivity in affinity contact printing by using UV-modified surfaces Langmuir 27 2011 5427 5432
    • (2011) Langmuir , vol.27 , pp. 5427-5432
    • Chen, C.-H.1    Yang, K.-L.2
  • 32
    • 0001580823 scopus 로고
    • Spectrometric assay of aldehydes as 6-mercapto-3-substituted-s-trizolo(4, 3-b)-tetrazines
    • N.W. Jacobsen, and R.G. Dickinson Spectrometric assay of aldehydes as 6-mercapto-3-substituted-s-trizolo(4,3-b)-tetrazines Anal. Chem. 46 1974 298 299
    • (1974) Anal. Chem. , vol.46 , pp. 298-299
    • Jacobsen, N.W.1    Dickinson, R.G.2
  • 33
    • 0028281399 scopus 로고
    • A method for the high efficiency of water-soluble carbodiimide-mediated amidation
    • DOI 10.1006/abio.1994.1144
    • D. Sehgal, and I.K. Vijay A method for the high efficiency of water-soluble carbodiimide-mediated amidation Anal. Biochem. 218 1994 87 91 (Pubitemid 24124750)
    • (1994) Analytical Biochemistry , vol.218 , Issue.1 , pp. 87-91
    • Sehgal, D.1    Vijay, I.K.2
  • 34
    • 5444243283 scopus 로고    scopus 로고
    • Covalent attachment and hybridization of DNA oligonucleotides on patterned single-walled carbon nanotube films
    • D.H. Jung, B.H. Kim, Y.K. Ko, M.S. Jung, S. Jung, S.Y. Lee, and H.T. Jung Covalent attachment and hybridization of DNA oligonucleotides on patterned single-walled carbon nanotube films Langmuir 20 2004 8886 8891
    • (2004) Langmuir , vol.20 , pp. 8886-8891
    • Jung, D.H.1    Kim, B.H.2    Ko, Y.K.3    Jung, M.S.4    Jung, S.5    Lee, S.Y.6    Jung, H.T.7
  • 35
    • 0028881098 scopus 로고
    • The biophysics of DNA hybridization with immobilized oligonucleotide probes
    • V. Chan, D.J. Graves, and S.E. McKenzie The biophysics of DNA hybridization with immobilized oligonucleotide probes Biophys. J. 69 1995 2243 2255
    • (1995) Biophys. J. , vol.69 , pp. 2243-2255
    • Chan, V.1    Graves, D.J.2    McKenzie, S.E.3
  • 36
    • 0000538122 scopus 로고    scopus 로고
    • Adsorption and surface diffusion of DNA oligonucleotides at liquid/solid interfaces
    • V. Chan, D.J. Graves, P. Fortina, and S.E. McKenzie Adsorption and surface diffusion of DNA oligonucleotides at liquid/solid interfaces Langmuir 13 1997 320 329 (Pubitemid 127591934)
    • (1997) Langmuir , vol.13 , Issue.2 , pp. 320-329
    • Chan, V.1    Graves, D.J.2    Fortina, P.3    McKenzie, S.E.4
  • 37
    • 3042855581 scopus 로고    scopus 로고
    • Optimization of probe length and the number of probes per gene for optimal microarray analysis of gene expression
    • C.C. Chou, C.H. Chen, T.T. Lee, and K. Peck Optimization of probe length and the number of probes per gene for optimal microarray analysis of gene expression Nucleic Acids Res. 32 2004 e99
    • (2004) Nucleic Acids Res. , vol.32 , pp. 99
    • Chou, C.C.1    Chen, C.H.2    Lee, T.T.3    Peck, K.4
  • 38
    • 28544450415 scopus 로고    scopus 로고
    • Position of the fluorescent label is a crucial factor determining signal intensity in microarray hybridizations
    • L. Zhang, T. Hurek, and B. Reinhold-Hurek Position of the fluorescent label is a crucial factor determining signal intensity in microarray hybridizations Nucleic Acids Res. 33 2005 e166
    • (2005) Nucleic Acids Res. , vol.33 , pp. 166
    • Zhang, L.1    Hurek, T.2    Reinhold-Hurek, B.3
  • 39
    • 42449116620 scopus 로고    scopus 로고
    • Specificity of DNA microarray hybridization: Characterization, effectors and approaches for data correction
    • DOI 10.1093/nar/gkn087
    • H. Koltai, and C. Weingarten-Baror Specificity of DNA microarray hybridization: characterization, effectors, and approaches for data correction Nucleic Acids Res. 36 2008 2395 2405 (Pubitemid 351567011)
    • (2008) Nucleic Acids Research , vol.36 , Issue.7 , pp. 2395-2405
    • Koltai, H.1    Weingarten-Baror, C.2


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