Performance of the Affymetrix GeneChip HIV PRT 440 platform for antiretroviral drug resistance genotyping of human immunodeficiency virus type 1 clades and viral isolates with length polymorphisms

Journal of Clinical Microbiology

Volumn 37, Issue 8, 1999, Pages 2533-2537

  Vahey, Maryanne ^a   Nau, Martin E ^b   Barrick, Sandra ^b   Cooley, John D ^b   Sawyer, Robert ^b   Sleeker, Alex A ^b   Vickerman, Peter ^b   Bloor, Stuart ^c   Larder, Brendan ^c   Michael, Nelson L ^a   Wegner, Scott A ^a  

^a WALTER REED ARMY INSTITUTE OF RESEARCH   (United States)

^b HENRY M JACKSON FOUNDATION FOR THE ADVANCEMENT OF MILITARY MEDICINE   (United States)

^c Virco UK Ltd   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIRETROVIRUS AGENT;

ARTICLE; CODON; DNA POLYMORPHISM; DNA SEQUENCE; GENOTYPE; HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; STRUCTURAL GENE; UNINDEXED SEQUENCE; VIRUS ISOLATION;

HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1; RNA VIRUSES;

EID: 0032804249     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/jcm.37.8.2533-2537.1999     Document Type: Article

References (13)

1. Alaeus, A., T. Leitner, K. Lidman, and J. Albert 1997. Most HIV-1 genetic subtypes have entered Sweden. AIDS 11:199-202.
2. Alaeus, A., K. Lidman, A. Sonnerborg, and J. Albert. 1997. Subtype-specific problems with quantification of plasma HIV-1 RNA. AIDS 11:859-865.
3. Debyser, Z., E. Van Wijngaerden, K. Van Laethem, K. Beuselinck, M. Reynders, E. De Clercq, J. Desmyter, and A. M. Vandamme. 1998. Failure to quantify viral load with two of the three commercial methods in a pregnant woman harboring an HIV type 1 subtype G strain. AIDS Res. Hum. Retroviruses 14:453-459.
4. Delwart, E. L., E. G. Shpaer, J. Louwagie, F. E. McCutchan, M. Grez, H. Rubsamen-Waigmann, and J, I. Mullins. 1993. Genetic relationships determined by a DNA heteroduplex mobility assay: analysis of HIV-1 env genes. Science 262:1257-1261.
5. Fodor, S. P. 1997. Massively parallel genomics. Science 277:393-395.
6. Gunthard, H. F., J. K. Wong, C. C. Ignacio, D. V. Havlir, and D. D. Richman. 1998. Comparative performance of high-density oligonucleotide sequencing and dideoxynucleotide sequencing of HIV type 1 pol from clinical samples. AIDS Res. Hum. Retroviruses 14:869-876.
7. Kozal, M. J., N. Shah, N. Shen, R. Yang, R. Fucini, T. C. Merigan, D. D. Richman, D. Morris, E. Hubbell, M. Chee, and T. R. Gingeras. 1996. Extensive polymorphisms observed in HIV-1 clade B protease gene using high-density oligonucleotide arrays. Nat. Med. 2:753-759.
8. Lipshutz, R. J. 1995. Using oligonucleotide probe arrays to assess genetic diversity. BioTechniques 19:442-447.
9. Mellors, J. W. 1998. Review of Lago Maggiore resistance meeting. 12th World AIDS Conference, Geneva, Switzerland.
10. Michael, N. L., S. A. Herman, S. Kwok, K. Dreyer, J. Wang, C. Chistopherson, J. P. Spadoro, K. K. Y. Young, V. Polonis, F. E. McCutchan, J. Carr, J. R. Mascola, L. L. Jagodzinski, and M. L. Robb. 1999. Development of calibrated viral load standards for group M subtypes of human immunodeficiency virus type 1 and performance of an improved AMPLICOR HIV-1 MONITOR test with isolates of diverse subtypes. J. Clin. Microbiol. 37: 2557-2563.
11. Pease, A. C., D. Solas, E. J. Sullivan, M. T. Cronin, C. P. Holmes, and S. P. Fodor. 1994. Light-generated oligonucleotide arrays for rapid DNA sequence analysis. Proc. Natl. Acad. Sci. USA 91:5022-5026.
12. Wainberg, M. A., Z. Gu, Q. Gao, E. Arts, R. Geleziunas, S. Bour, R. Beaulieu, C. Tsoukas, J. Singer, and J. Montaner. 1993. Clinical correlates and molecular basis of HIV drug resistance. J. Acquired Immune Defic. Syndr. 6(Suppl. 1):S36-S46.
13. Wainberg, M. A., H. Salomon, B. Spira, L. Mercure, J. Wainberg, K. Nagai, Z. Bentwich, and J. Montaner. 1993. HIV resistance to anti-viral drugs. Braz. J. Med. Biol. Res. 26:299-308.