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ITC was used to obtain a full thermodynamic characterization of the binding affinity for several lead compounds. The procedure is similar to that reported by Mayhood and co-workers in Ref. 14. Briefly, human CDK2 was dialyzed in to 10 mM Hepes, 150 mM NaCl, 10% glycerol, 1 mM DTT, pH 7.5 overnight with 2 changes of buffer. Both protein and ligand samples were prepared in 2 ml volumes. To prepare the ligand solution 20 μl of a 10 mM compound stock (in DMSO) was added to 2 ml of buffer. The ITC runs were performed at 20 C using approximately 10-15 μM CDK2 and 100-150 μM compound and mixed at a rate of 350 rpm. Injection volumes varied from 15 to 18 μl and 360 s of data was recorded for each titration. When a clear baseline was not observed a blank titration was performed to subtract it from the raw data. The MicroCal MCS ITC and included software were used for performing the titrations and analysis.
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