메뉴 건너뛰기




Volumn 10, Issue 85, 2013, Pages

Scaling down DNA circuits with competitive neural networks

Author keywords

Molecular programming; Pattern recognition; Strand displacement circuits; Winner take all

Indexed keywords

PATTERN RECOGNITION;

EID: 84891445562     PISSN: 17425689     EISSN: 17425662     Source Type: Journal    
DOI: 10.1098/rsif.2013.0212     Document Type: Article
Times cited : (48)

References (71)
  • 1
    • 67650360431 scopus 로고    scopus 로고
    • Biocomputers: From test tubes to live cells
    • doi:10.1039/b902484k
    • Benenson Y. 2009 Biocomputers: from test tubes to live cells. Mol. Biosyst. 5, 675-685. (doi:10.1039/b902484k)
    • (2009) Mol. Biosyst. , vol.5 , pp. 675-685
    • Benenson, Y.1
  • 2
    • 80052493200 scopus 로고    scopus 로고
    • Synthetic biology: Integrated gene circuits
    • doi:10.1126/science.1207084
    • Nandagopal N, Elowitz MB. 2011 Synthetic biology: integrated gene circuits. Science 333, 1244-1248. (doi:10.1126/science.1207084)
    • (2011) Science , vol.333 , pp. 1244-1248
    • Nandagopal, N.1    Elowitz, M.B.2
  • 3
    • 84865282069 scopus 로고    scopus 로고
    • Synthetic in vitro circuits
    • doi:10.1016/j.cbpa.2012.05.179
    • Hockenberry AJ, Jewett MC. 2012 Synthetic in vitro circuits. Curr. Opin. Chem. Biol. 16, 253-259. (doi:10.1016/j.cbpa.2012.05.179)
    • (2012) Curr. Opin. Chem. Biol. , vol.16 , pp. 253-259
    • Hockenberry, A.J.1    Jewett, M.C.2
  • 4
    • 33645028600 scopus 로고    scopus 로고
    • Folding DNA to create nanoscale shapes and patterns
    • doi:10.1038/nature04586
    • Rothemund PWK. 2006 Folding DNA to create nanoscale shapes and patterns. Nature 440, 297-302. (doi:10.1038/nature04586)
    • (2006) Nature , vol.440 , pp. 297-302
    • Rothemund, P.W.K.1
  • 5
    • 66249137759 scopus 로고    scopus 로고
    • Self-assembly of DNA into nanoscale three-dimensional shapes
    • doi:10.1038/nature08016
    • Douglas SM, Dietz H, Liedl T, Hogberg B, Graf F, Shih WM. 2009 Self-assembly of DNA into nanoscale three-dimensional shapes. Nature 459, 414-418. (doi:10.1038/nature08016)
    • (2009) Nature , vol.459 , pp. 414-418
    • Douglas, S.M.1    Dietz, H.2    Liedl, T.3    Hogberg, B.4    Graf, F.5    Shih, W.M.6
  • 6
    • 65549170920 scopus 로고    scopus 로고
    • Self-assembly of a nanoscale DNA box with a controllable lid
    • doi:10.1038/nature07971
    • Andersen ES et al. 2009 Self-assembly of a nanoscale DNA box with a controllable lid. Nature 459, 73-75. (doi:10.1038/nature07971)
    • (2009) Nature , vol.459 , pp. 73-75
    • Andersen, E.S.1
  • 8
    • 77957915679 scopus 로고    scopus 로고
    • Folding and cutting DNA into reconfigurable topological nanostructures
    • doi:10.1038/nnano.2010.193
    • Han DR, Pal S, Liu Y, Yan H. 2010 Folding and cutting DNA into reconfigurable topological nanostructures. Nat. Nanotechnol. 5, 712-717. (doi:10.1038/nnano.2010.193)
    • (2010) Nat. Nanotechnol. , vol.5 , pp. 712-717
    • Han, D.R.1    Pal, S.2    Liu, Y.3    Yan, H.4
  • 9
    • 79954620578 scopus 로고    scopus 로고
    • DNA origami with complex curvatures in three-dimensional space
    • doi:10.1126/science.1202998
    • Han DR, Pal S, Nangreave J, Deng ZT, Liu Y, Yan H. 2011 DNA origami with complex curvatures in three-dimensional space. Science 332, 342-346. (doi:10.1126/science.1202998)
    • (2011) Science , vol.332 , pp. 342-346
    • Han, D.R.1    Pal, S.2    Nangreave, J.3    Deng, Z.T.4    Liu, Y.5    Yan, H.6
  • 10
    • 84870154659 scopus 로고    scopus 로고
    • Three-dimensional structures self-assembled from DNA bricks
    • doi:10.1126/science.1227268
    • Ke YG, Ong LL, Shih WM, Yin P. 2012 Three-dimensional structures self-assembled from DNA bricks. Science 338, 1177-1183. (doi:10.1126/science. 1227268)
    • (2012) Science , vol.338 , pp. 1177-1183
    • Ke, Y.G.1    Ong, L.L.2    Shih, W.M.3    Yin, P.4
  • 11
    • 84872066293 scopus 로고    scopus 로고
    • Cooperativity in the annealing of DNA origamis
    • doi:10.1063/1.4773405
    • Arbona JM, Aime JP, Elezgaray J. 2013 Cooperativity in the annealing of DNA origamis. J. Chem. Phys. 138, 015105. (doi:10.1063/1.4773405)
    • (2013) J. Chem. Phys. , vol.138 , pp. 015105
    • Arbona, J.M.1    Aime, J.P.2    Elezgaray, J.3
  • 14
    • 84860353616 scopus 로고    scopus 로고
    • pH-programmable DNA logic arrays powered by modular DNAzyme libraries
    • doi:10.1021/nl300051g
    • Elbaz J, Wang FA, Remacle F, Willner I. 2012 pH-programmable DNA logic arrays powered by modular DNAzyme libraries. Nano Lett. 12, 6049-6054. (doi:10.1021/nl300051g)
    • (2012) Nano Lett. , vol.12 , pp. 6049-6054
    • Elbaz, J.1    Wang, F.A.2    Remacle, F.3    Willner, I.4
  • 15
    • 77952392836 scopus 로고    scopus 로고
    • Molecular robots guided by prescriptive landscapes
    • doi:10.1038/nature09012
    • Lund K et al. 2010 Molecular robots guided by prescriptive landscapes. Nature 465, 206-210. (doi:10.1038/nature09012)
    • (2010) Nature , vol.465 , pp. 206-210
    • Lund, K.1
  • 17
    • 67049154133 scopus 로고    scopus 로고
    • A DNA nanomachine that maps spatial and temporal pH changes inside living cells
    • doi:10.1038/nnano.2009.83
    • Modi S, Swetha MG, Goswami D, Gupta GD, Mayor S, Krishnan Y. 2009 A DNA nanomachine that maps spatial and temporal pH changes inside living cells. Nat. Nanotechnol. 4, 325-330. (doi:10.1038/nnano.2009.83)
    • (2009) Nat. Nanotechnol. , vol.4 , pp. 325-330
    • Modi, S.1    Swetha, M.G.2    Goswami, D.3    Gupta, G.D.4    Mayor, S.5    Krishnan, Y.6
  • 18
    • 78650366838 scopus 로고    scopus 로고
    • Multiplexed and reiterative fluorescence labeling via DNA circuitry
    • doi:10.1021/bc100348q
    • Duose DY, Schweller RM, Hittelman WN, Diehl MR. 2010 Multiplexed and reiterative fluorescence labeling via DNA circuitry. Bioconjug. Chem. 21, 2327-2331. (doi:10.1021/bc100348q)
    • (2010) Bioconjug. Chem. , vol.21 , pp. 2327-2331
    • Duose, D.Y.1    Schweller, R.M.2    Hittelman, W.N.3    Diehl, M.R.4
  • 19
    • 84860209090 scopus 로고    scopus 로고
    • Configuring robust DNA strand displacement reactions for in situ molecular analyses
    • doi:10.1093/nar/gkr1209
    • Duose DY, Schweller RM, Zimak J, Rogers AR, Hittelman WN, Diehl MR. 2012 Configuring robust DNA strand displacement reactions for in situ molecular analyses. Nucleic Acids Res. 40, 3289-3298. (doi:10.1093/nar/gkr1209)
    • (2012) Nucleic Acids Res. , vol.40 , pp. 3289-3298
    • Duose, D.Y.1    Schweller, R.M.2    Zimak, J.3    Rogers, A.R.4    Hittelman, W.N.5    Diehl, M.R.6
  • 20
    • 78349270178 scopus 로고    scopus 로고
    • Multistep DNA-templated reactions for the synthesis of functional sequence controlled oligomers
    • doi:10.1002/anie.201002721
    • McKee ML, Milnes PJ, Bath J, Stulz E, Turberfield AJ, O'Reilly RK. 2010 Multistep DNA-templated reactions for the synthesis of functional sequence controlled oligomers. Angew. Chem. Int. Ed. 49, 7948-7951. (doi:10.1002/anie. 201002721)
    • (2010) Angew. Chem. Int. Ed. , vol.49 , pp. 7948-7951
    • McKee, M.L.1    Milnes, P.J.2    Bath, J.3    Stulz, E.4    Turberfield, A.J.5    O'Reilly, R.K.6
  • 21
    • 84860201246 scopus 로고    scopus 로고
    • Meta-DNA: Synthetic biology via DNA nanostructures and hybridization reactions
    • doi:10.1098/rsif.2011.0819
    • Chandran H, Gopalkrishnan N, Yurke B, Reif J. 2012 Meta-DNA: synthetic biology via DNA nanostructures and hybridization reactions. J. R. Soc. Interface 9, 1637-1653. (doi:10.1098/rsif.2011.0819)
    • (2012) J. R. Soc. Interface , vol.9 , pp. 1637-1653
    • Chandran, H.1    Gopalkrishnan, N.2    Yurke, B.3    Reif, J.4
  • 23
    • 38349121586 scopus 로고    scopus 로고
    • Programming biomolecular self-assembly pathways
    • doi:10.1038/nature06451
    • Yin P, Choi HMT, Calvert CR, Pierce NA. 2008 Programming biomolecular self-assembly pathways. Nature 451, 318-322. (doi:10.1038/nature06451)
    • (2008) Nature , vol.451 , pp. 318-322
    • Yin, P.1    Choi, H.M.T.2    Calvert, C.R.3    Pierce, N.A.4
  • 24
    • 70349970815 scopus 로고    scopus 로고
    • Coherent activation of DNA tweezers: A 'SET-RESET' logic system
    • doi:10.1002/anie.200805819
    • Elbaz J, Moshe M, Willner I. 2009 Coherent activation of DNA tweezers: a 'SET-RESET' logic system. Angew. Chem. Int. Ed. 48, 3834-3837. (doi:10.1002/anie.200805819)
    • (2009) Angew. Chem. Int. Ed. , vol.48 , pp. 3834-3837
    • Elbaz, J.1    Moshe, M.2    Willner, I.3
  • 25
    • 79251621970 scopus 로고    scopus 로고
    • Dynamic DNA nanotechnology using strand-displacement reactions
    • doi:10.1038/nchem.957
    • Zhang DY, Seelig G. 2011 Dynamic DNA nanotechnology using strand-displacement reactions. Nat. Chem. 3, 103-113. (doi:10.1038/nchem.957)
    • (2011) Nat. Chem. , vol.3 , pp. 103-113
    • Zhang, D.Y.1    Seelig, G.2
  • 26
    • 79851473411 scopus 로고    scopus 로고
    • Cooperative hybridization of oligonucleotides
    • doi:10.1021/ja109089q
    • Zhang DY. 2011 Cooperative hybridization of oligonucleotides. J. Am. Chem. Soc. 133, 1077-1086. (doi:10.1021/ja109089q)
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 1077-1086
    • Zhang, D.Y.1
  • 27
    • 79954616395 scopus 로고    scopus 로고
    • A DNA tile actuator with eleven discrete states
    • doi:10.1002/anie.201007642
    • Zhang Z et al. 2011 A DNA tile actuator with eleven discrete states. Angew. Chem. Int. Ed. 50, 3983-3987. (doi:10.1002/anie.201007642)
    • (2011) Angew. Chem. Int. Ed. , vol.50 , pp. 3983-3987
    • Zhang, Z.1
  • 28
    • 83455242831 scopus 로고    scopus 로고
    • A responsive hidden toehold to enable controllable DNA strand displacement reactions
    • doi:10.1002/anie.201105923
    • Xing YZ, Yang ZQ, Liu DS. 2011 A responsive hidden toehold to enable controllable DNA strand displacement reactions. Angew. Chem. Int. Ed. 50, 11 934-11 936. (doi:10.1002/anie.201105923)
    • (2011) Angew. Chem. Int. Ed. , vol.50 , pp. 11934-11936
    • Xing, Y.Z.1    Yang, Z.Q.2    Liu, D.S.3
  • 29
    • 79951841779 scopus 로고    scopus 로고
    • Remote toehold: A mechanism for flexible control of DNA hybridization kinetics
    • doi:10.1021/ja1073239
    • Genot AJ, Zhang DY, Bath J, Turberfield AJ. 2011 Remote toehold: a mechanism for flexible control of DNA hybridization kinetics. J. Am. Chem. Soc. 133, 2177-2182. (doi:10.1021/ja1073239)
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 2177-2182
    • Genot, A.J.1    Zhang, D.Y.2    Bath, J.3    Turberfield, A.J.4
  • 31
    • 36248972215 scopus 로고    scopus 로고
    • Engineering entropy-driven reactions and networks catalyzed by DNA
    • doi:10.1126/science.1148532
    • Zhang DY, Turberfield AJ, Yurke B, Winfree E. 2007 Engineering entropy-driven reactions and networks catalyzed by DNA. Science 318, 1121-1125. (doi:10.1126/science.1148532)
    • (2007) Science , vol.318 , pp. 1121-1125
    • Zhang, D.Y.1    Turberfield, A.J.2    Yurke, B.3    Winfree, E.4
  • 32
    • 77950444491 scopus 로고    scopus 로고
    • DNA as a universal substrate for chemical kinetics
    • doi:10.1073/pnas.0909380107
    • Soloveichik D, Seelig G, Winfree E. 2010 DNA as a universal substrate for chemical kinetics. Proc. Natl Acad. Sci. USA 107, 5393-5398. (doi:10.1073/pnas.0909380107)
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 5393-5398
    • Soloveichik, D.1    Seelig, G.2    Winfree, E.3
  • 33
    • 0042360338 scopus 로고    scopus 로고
    • A deoxyribozyme-based molecular automaton
    • doi:10.1038/nbt862
    • Stojanovic MN, Stefanovic D. 2003 A deoxyribozyme-based molecular automaton. Nat. Biotechnol. 21, 1069-1074. (doi:10.1038/nbt862)
    • (2003) Nat. Biotechnol. , vol.21 , pp. 1069-1074
    • Stojanovic, M.N.1    Stefanovic, D.2
  • 34
    • 33845411737 scopus 로고    scopus 로고
    • Enzyme-free nucleic acid logic circuits
    • doi:10.1126/science.1132493
    • Seelig G, Soloveichik D, Zhang DY, Winfree E. 2006 Enzyme-free nucleic acid logic circuits. Science 314, 1585-1588. (doi:10.1126/science.1132493)
    • (2006) Science , vol.314 , pp. 1585-1588
    • Seelig, G.1    Soloveichik, D.2    Zhang, D.Y.3    Winfree, E.4
  • 35
    • 70350683746 scopus 로고    scopus 로고
    • Molecular implementation of simple logic programs
    • doi:10.1038/nnano.2009.203
    • Ran T, Kaplan S, Shapiro E. 2009 Molecular implementation of simple logic programs. Nat. Nanotechnol. 4, 642-648. (doi:10.1038/nnano.2009.203)
    • (2009) Nat. Nanotechnol. , vol.4 , pp. 642-648
    • Ran, T.1    Kaplan, S.2    Shapiro, E.3
  • 36
    • 79957940295 scopus 로고    scopus 로고
    • A simple DNA gate motif for synthesizing large-scale circuits
    • doi:10.1098/rsif.2010.0729
    • Qian L, Winfree E. 2011 A simple DNA gate motif for synthesizing large-scale circuits. J. R. Soc. Interface 8, 1281-1297. (doi:10.1098/rsif.2010. 0729)
    • (2011) J. R. Soc. Interface , vol.8 , pp. 1281-1297
    • Qian, L.1    Winfree, E.2
  • 37
    • 79957946108 scopus 로고    scopus 로고
    • Scaling up digital circuit computation with DNA strand displacement cascades
    • doi:10.1126/science.1200520
    • Qian L, Winfree E. 2011 Scaling up digital circuit computation with DNA strand displacement cascades. Science 332, 1196-1201. (doi:10.1126/science. 1200520)
    • (2011) Science , vol.332 , pp. 1196-1201
    • Qian, L.1    Winfree, E.2
  • 38
    • 83755171361 scopus 로고    scopus 로고
    • Reversible logic circuits made of DNA
    • doi:10.1021/ja208497p
    • Genot AJ, Bath J, Turberfield AJ. 2011 Reversible logic circuits made of DNA. J. Am. Chem. Soc. 133, 20 080-20 083. (doi:10.1021/ja208497p)
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 20080-20083
    • Genot, A.J.1    Bath, J.2    Turberfield, A.J.3
  • 39
    • 84871844918 scopus 로고    scopus 로고
    • Logic reversibility and thermodynamic irreversibility demonstrated by DNAzyme-based Toffoli and Fredkin logic gates
    • doi:10.1073/pnas.1219672110
    • Orbach R, Remacle F, Levine RD, Itamar W. 2012 Logic reversibility and thermodynamic irreversibility demonstrated by DNAzyme-based Toffoli and Fredkin logic gates. Proc. Natl Acad. Sci. USA 109, 21 228-21 233. (doi:10.1073/pnas. 1219672110)
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 21228-21233
    • Orbach, R.1    Remacle, F.2    Levine, R.D.3    Itamar, W.4
  • 41
    • 84872416211 scopus 로고    scopus 로고
    • Combinatorial displacement of DNA strands: Application to matrix multiplication and weighted sums
    • Genot AJ, Bath J, Turberfield A. 2013 Combinatorial displacement of DNA strands: application to matrix multiplication and weighted sums. Angew. Chem. Int. Ed. 52, 1189-1192.
    • (2013) Angew. Chem. Int. Ed. , vol.52 , pp. 1189-1192
    • Genot, A.J.1    Bath, J.2    Turberfield, A.3
  • 42
    • 79960650829 scopus 로고    scopus 로고
    • Neural network computation with DNA strand displacement cascades
    • doi:10.1038/nature10262
    • Qian L, Winfree E, Bruck J. 2011 Neural network computation with DNA strand displacement cascades. Nature 475, 368-372. (doi:10.1038/nature10262)
    • (2011) Nature , vol.475 , pp. 368-372
    • Qian, L.1    Winfree, E.2    Bruck, J.3
  • 43
    • 33846116559 scopus 로고    scopus 로고
    • Construction of an in vitro bistable circuit from synthetic transcriptional switches
    • doi:10.1038/msb4100099
    • Kim J, White KS, Winfree E. 2006 Construction of an in vitro bistable circuit from synthetic transcriptional switches. Mol. Syst. Biol. 2, article 68. (doi:10.1038/msb4100099)
    • (2006) Mol. Syst. Biol. , vol.2 , pp. 68
    • Kim, J.1    White, K.S.2    Winfree, E.3
  • 44
    • 56149111222 scopus 로고    scopus 로고
    • Experiments and simulation models of a basic computation element of an autonomous molecular computing system
    • doi:10.1103/PhysRevE.78.041921
    • Takinoue M, Kiga D, Shohda KI, Suyama A. 2008 Experiments and simulation models of a basic computation element of an autonomous molecular computing system. Phys. Rev. E 78, 041921 (doi:10.1103/PhysRevE.78.041921)
    • (2008) Phys. Rev. E , vol.78 , pp. 041921
    • Takinoue, M.1    Kiga, D.2    Shohda, K.I.3    Suyama, A.4
  • 45
    • 79551586208 scopus 로고    scopus 로고
    • Programming an in vitro DNA oscillator using a molecular networking strategy
    • doi:10.1038/msb.2010.120
    • Montagne K, Plasson R, Sakai Y, Fujii T, Rondelez Y. 2011 Programming an in vitro DNA oscillator using a molecular networking strategy. Mol. Syst. Biol. 7, article 466. (doi:10.1038/msb.2010.120)
    • (2011) Mol. Syst. Biol. , vol.7 , pp. 466
    • Montagne, K.1    Plasson, R.2    Sakai, Y.3    Fujii, T.4    Rondelez, Y.5
  • 46
    • 79551599731 scopus 로고    scopus 로고
    • Synthetic in vitro transcriptional oscillators
    • doi:10.1038/msb.2010.119
    • Kim J, Winfree E. 2011 Synthetic in vitro transcriptional oscillators. Mol. Syst. Biol. 7, article 465. (doi:10.1038/msb.2010.119)
    • (2011) Mol. Syst. Biol. , vol.7 , pp. 465
    • Kim, J.1    Winfree, E.2
  • 47
    • 84255209210 scopus 로고    scopus 로고
    • RTRACS: A modularized RNA-dependent RNA transcription system with high programmability
    • doi:10.1021/ar200128b
    • Ayukawa S, Takinoue M, Kiga D. 2011 RTRACS: a modularized RNA-dependent RNA transcription system with high programmability. Acc. Chem. Res. 44, 1369-1379. (doi:10.1021/ar200128b)
    • (2011) Acc. Chem. Res. , vol.44 , pp. 1369-1379
    • Ayukawa, S.1    Takinoue, M.2    Kiga, D.3
  • 48
    • 84869812690 scopus 로고    scopus 로고
    • PNAS plus: Bottom-up construction of in vitro switchable memories
    • doi:10.1073/pnas.1212069109
    • Padirac A, Fujii T, Rondelez Y. 2012 PNAS plus: bottom-up construction of in vitro switchable memories. Proc. Natl Acad. Sci. USA 109, E3212-E3220. (doi:10.1073/pnas.1212069109)
    • (2012) Proc. Natl Acad. Sci. USA , vol.109
    • Padirac, A.1    Fujii, T.2    Rondelez, Y.3
  • 49
    • 84872849537 scopus 로고    scopus 로고
    • Predator-prey molecular ecosystems
    • Rondelez Y, Fujii T. 2013 Predator-prey molecular ecosystems. ACS Nano 7, 27-37.
    • (2013) ACS Nano , vol.7 , pp. 27-37
    • Rondelez, Y.1    Fujii, T.2
  • 50
    • 33846095183 scopus 로고    scopus 로고
    • Neural network computation by in vitro transcriptional circuits
    • eds LK Saul, Y Weiss, L Bottou, . Cambridge, MA: MIT Press
    • Kim J, Hopfield JJ, Winfree E. 2004 Neural network computation by in vitro transcriptional circuits. In Advances in neural information processing systems, vol. 17 (eds LK Saul, Y Weiss, L Bottou), pp. 681-688. Cambridge, MA: MIT Press.
    • (2004) Advances in Neural Information Processing Systems , vol.17 , pp. 681-688
    • Kim, J.1    Hopfield, J.J.2    Winfree, E.3
  • 51
    • 79961170994 scopus 로고    scopus 로고
    • A ceRNA hypothesis: The Rosetta Stone of a hidden RNA language?
    • doi:10.1016/j.cell.2011.07.014
    • Salmena L, Poliseno L, Tay Y, Kats L, Pandolfi PP. 2011 A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language? Cell 146, 353-358. (doi:10.1016/j.cell.2011.07.014)
    • (2011) Cell , vol.146 , pp. 353-358
    • Salmena, L.1    Poliseno, L.2    Tay, Y.3    Kats, L.4    Pandolfi, P.P.5
  • 52
    • 84855481443 scopus 로고    scopus 로고
    • Competition for catalytic resources alters biological network dynamics
    • doi:10.1103/PhysRevLett.108.018102
    • Rondelez Y. 2012 Competition for catalytic resources alters biological network dynamics. Phys. Rev. Lett. 108, 018102. (doi:10.1103/PhysRevLett.108. 018102)
    • (2012) Phys. Rev. Lett. , vol.108 , pp. 018102
    • Rondelez, Y.1
  • 53
    • 84869034595 scopus 로고    scopus 로고
    • Computing with competition in biochemical networks
    • doi:10.1103/PhysRevLett.109.208102
    • Genot AJ, Fujii T, Rondelez Y. 2012 Computing with competition in biochemical networks. Phys. Rev. Lett. 109, 208102. (doi:10.1103/PhysRevLett. 109.208102)
    • (2012) Phys. Rev. Lett. , vol.109 , pp. 208102
    • Genot, A.J.1    Fujii, T.2    Rondelez, Y.3
  • 55
    • 0034321873 scopus 로고    scopus 로고
    • On the computational power of winner-take-all
    • doi:10.1162/089976600300014827
    • Maass W. 2000 On the computational power of winner-take-all. Neural Comput. 12, 2519-2535. (doi:10.1162/089976600300014827)
    • (2000) Neural Comput. , vol.12 , pp. 2519-2535
    • Maass, W.1
  • 56
    • 3543133526 scopus 로고    scopus 로고
    • Using DNA to power nanostructures
    • doi:10.1023/A:1023928811651
    • Yurke B, Mills AP. 2003 Using DNA to power nanostructures. Genet. Prog. Evol. Mach. 4, 111-122. (doi:10.1023/A:1023928811651)
    • (2003) Genet. Prog. Evol. Mach. , vol.4 , pp. 111-122
    • Yurke, B.1    Mills, A.P.2
  • 57
    • 33750090419 scopus 로고    scopus 로고
    • The origin of replicators and reproducers
    • doi:10.1098/rstb.2006.1912
    • Szathmá ry E. 2006 The origin of replicators and reproducers. Phil. Trans. R. Soc. B 361, 1761-1776. (doi:10.1098/rstb.2006.1912)
    • (2006) Phil. Trans. R. Soc. B , vol.361 , pp. 1761-1776
    • Szathmáry, E.1
  • 60
    • 0029728724 scopus 로고    scopus 로고
    • The hamming associative memory and its relation to the exponential capacity DAM
    • ICNN-96, June 3-6, Washington, DC
    • Hassoun M, Watta P. 1996 The hamming associative memory and its relation to the exponential capacity DAM. In Proc. IEEE Int. Conf. Neural Networks, vol. 1, ICNN-96, June 3-6, pp. 583-587. Washington, DC.
    • (1996) Proc. IEEE Int. Conf. Neural Networks , vol.1 , pp. 583-587
    • Hassoun, M.1    Watta, P.2
  • 61
    • 0028343925 scopus 로고
    • The kinetics of spontaneous DNA branch migration
    • doi:10.1073/pnas.91.6.2021
    • Panyutin IG, Hsieh P. 1994 The kinetics of spontaneous DNA branch migration. Proc. Natl Acad. Sci. USA 91, 2021-2025. (doi:10.1073/pnas.91.6.2021)
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 2021-2025
    • Panyutin, I.G.1    Hsieh, P.2
  • 62
    • 80755144063 scopus 로고    scopus 로고
    • Visual DSD: A design and analysis tool for DNA strand displacement systems
    • doi:10.1093/bioinformatics/btr543
    • Lakin MR, Youssef S, Polo F, Emmott S, Phillips A. 2011 Visual DSD: a design and analysis tool for DNA strand displacement systems. Bioinformatics 27, 3211-3213. (doi:10.1093/bioinformatics/btr543)
    • (2011) Bioinformatics , vol.27 , pp. 3211-3213
    • Lakin, M.R.1    Youssef, S.2    Polo, F.3    Emmott, S.4    Phillips, A.5
  • 64
    • 84863600034 scopus 로고    scopus 로고
    • Design and analysis of DNA strand displacement devices using probabilistic model checking
    • doi:10.1098/rsif.2011.0800
    • Lakin MR, Parker D, Cardelli L, Kwiatkowska M, Phillips A. 2012 Design and analysis of DNA strand displacement devices using probabilistic model checking. J. R. Soc. Interface 9, 1470-1485. (doi:10.1098/rsif.2011.0800)
    • (2012) J. R. Soc. Interface , vol.9 , pp. 1470-1485
    • Lakin, M.R.1    Parker, D.2    Cardelli, L.3    Kwiatkowska, M.4    Phillips, A.5
  • 65
    • 0034708332 scopus 로고    scopus 로고
    • The kinetics of oligonucleotide replacements
    • doi:10.1006/jmbi.2000.3573
    • Reynaldo LP, Vologodskii AV, Neri BP, Lyamichev VI. 2000 The kinetics of oligonucleotide replacements. J. Mol. Biol. 297, 511-520. (doi:10.1006/jmbi. 2000.3573)
    • (2000) J. Mol. Biol. , vol.297 , pp. 511-520
    • Reynaldo, L.P.1    Vologodskii, A.V.2    Neri, B.P.3    Lyamichev, V.I.4
  • 66
    • 72249110882 scopus 로고    scopus 로고
    • Control of DNA strand displacement kinetics using toehold exchange
    • doi:10.1021/ja906987s
    • Zhang DY, Winfree E. 2009 Control of DNA strand displacement kinetics using toehold exchange. J. Am. Chem. Soc. 131, 17 303-17 314. (doi:10.1021/ja906987s)
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 17303-17314
    • Zhang, D.Y.1    Winfree, E.2
  • 68
    • 0031442682 scopus 로고    scopus 로고
    • Emergence of symbiosis in peptide self-replication through a hypercyclic network
    • doi:10.1038/37569
    • Lee DH, Severin K, Yokobayashi Y, Ghadiri MR. 1997 Emergence of symbiosis in peptide self-replication through a hypercyclic network. Nature 390, 591-594. (doi:10.1038/37569)
    • (1997) Nature , vol.390 , pp. 591-594
    • Lee, D.H.1    Severin, K.2    Yokobayashi, Y.3    Ghadiri, M.R.4
  • 69
    • 66049093066 scopus 로고    scopus 로고
    • Niche partitioning in the coevolution of 2 distinct RNA enzymes
    • doi:10.1073/pnas.0903397106
    • Voytek SB, Joyce GF. 2009 Niche partitioning in the coevolution of 2 distinct RNA enzymes. Proc. Natl Acad. Sci. USA 106, 7780-7785. (doi:10.1073/pnas.0903397106)
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 7780-7785
    • Voytek, S.B.1    Joyce, G.F.2
  • 70
    • 84868368844 scopus 로고    scopus 로고
    • Spontaneous network formation among cooperative RNA replicators
    • doi:10.1038/nature11549
    • Vaidya N, Manapat ML, Chen IA, Xulvi-Brunet R, Hayden EJ, Lehman N. 2012 Spontaneous network formation among cooperative RNA replicators. Nature 491, 72-77. (doi:10.1038/nature11549)
    • (2012) Nature , vol.491 , pp. 72-77
    • Vaidya, N.1    Manapat, M.L.2    Chen, I.A.3    Xulvi-Brunet, R.4    Hayden, E.J.5    Lehman, N.6
  • 71
    • 84880070390 scopus 로고    scopus 로고
    • Molecular computations with competitive neural networks that exploit linear and nonlinear kinetics
    • Turing-100. The Alan Turing centenary (ed. A Voronkov), EasyChair: Manchester, UK. Manchester
    • Genot A, Fujii T, Rondelez Y. 2012 Molecular computations with competitive neural networks that exploit linear and nonlinear kinetics. In Turing-100. The Alan Turing centenary (ed. A Voronkov), pp. 113-117. EasyChair Proceedings in Computing (EPiC), vol. 10. EasyChair: Manchester, UK. See http://www.easychair.org/publications/?page=171364546 Manchester.
    • (2012) EasyChair Proceedings in Computing (EPiC) , vol.10 , pp. 113-117
    • Genot, A.1    Fujii, T.2    Rondelez, Y.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.