Solution conformation of adenovirus virus associated RNA-I and its interaction with PKR

Journal of Structural Biology

Volumn 185, Issue 1, 2014, Pages 48-57

  Dzananovic, Edis ^a   Patel, Trushar R ^a,f   Chojnowski, Grzegorz ^b   Boniecki, Michal J ^b   Deo, Soumya ^a   McEleney, Kevin ^a,c   Harding, Stephen E ^d   Bujnicki, Janusz M ^b,e   McKenna, Sean A ^a  

^a UNIVERSITY OF MANITOBA   (Canada)

^b INTERNATIONAL INSTITUTE OF MOLECULAR AND CELL BIOLOGY   (Poland)

^c UNIVERSITY OF MANITOBA   (Canada)

^d UNIVERSITY OF NOTTINGHAM   (United Kingdom)

^e ADAM MICKIEWICZ UNIVERSITY   (Poland)

^f UNIVERSITY OF BIRMINGHAM   (United Kingdom)

Author keywords

Adenovirus; DsRNA; In silico structure determination; PKR; Protein RNA interactions; Small angle X ray scattering; VAI RNA

Indexed keywords

ADENOVIRUS VIRUS ASSOCIATED RNA I; PROTEIN KINASE R; UNCLASSIFIED DRUG; VIRUS RNA;

AB INITIO CALCULATION; ADENOVIRUS; ARTICLE; COMPUTER MODEL; CONFORMATION; CONTROLLED STUDY; HUMAN; HYDRODYNAMICS; IN VITRO STUDY; INNATE IMMUNITY; PRIORITY JOURNAL; PROTEIN RNA BINDING; PROTEIN SECONDARY STRUCTURE;

ADENOVIRIDAE;

ADENOVIRUS; ADENOVIRUS VIRUS-ASSOCIATED RNA; ANALYTICAL ULTRACENTRIFUGATION; APICAL STEM-LOOP; APICAL STEM-LOOP OF VA(I); AS; AUC; CENTRAL STEM-LOOP; CS; D(MAX); DLS; DOUBLE-STRANDED RNA BINDING DOMAINS; DSRBMS; DSRNA; DYNAMIC LIGHT SCATTERING; EIF2; ELECTRON MICROSCOPY; ELECTRON PAIR-DISTANCE DISTRIBUTION FUNCTION; EM; EUKARYOTIC INITIATION FACTOR 2; HYDRODYNAMIC RADIUS; IN SILICO STRUCTURE DETERMINATION; MAXIMUM PARTICLE DIMENSION; NORMALIZED SPATIAL DISCREPANCY; NSD; P(R) FUNCTION; PKR; PROTEIN-RNA INTERACTIONS; R(G); R(H); RADIUS OF GYRATION; RNA-ACTIVATED PROTEIN KINASE; S(20)(W); SAXS; SEC; SEDIMENTATION CO-EFFICIENT OF WATER AT 20°C; SIZE EXCLUSION CHROMATOGRAPHY; SMALL ANGLE X-RAY SCATTERING; TERMINAL STEM-LOOP; TS; VA(I); VA(I) LACKING THE TERMINAL STEM; VA(I) RNA; VA(I)AS; VA(IΔ)TS;

ADENOVIRIDAE; BINDING SITES; HUMANS; NUCLEIC ACID CONFORMATION; PROTEIN KINASES; PROTEIN STRUCTURE, TERTIARY; RNA, BACTERIAL; RNA, DOUBLE-STRANDED; RNA, VIRAL; SOLUTIONS;

EID: 84891034536     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2013.11.007     Document Type: Article

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