메뉴 건너뛰기




Volumn 21, Issue 6-7, 2013, Pages 713-724

Boosting transcription by transcription: Enhancer-associated transcripts

Author keywords

Chromatin; Cohesion; Enhancer; Enhancer transcripts; eRNA; Histone modifications; Mediator; Noncoding RNA; Transcription

Indexed keywords

ACTIVITY REGULATED CYTOSKELETON ASSOCIATED PROTEIN; COHESIN; ESTRADIOL; ESTROGEN RECEPTOR ALPHA; HEMOGLOBIN BETA CHAIN; LONG UNTRANSLATED RNA; MEDIATOR 1; MEDIATOR 12; MULTIPROTEIN COMPLEX; POTASSIUM CHLORIDE; TETRODOTOXIN; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

EID: 84891031064     PISSN: 09673849     EISSN: 15736849     Source Type: Journal    
DOI: 10.1007/s10577-013-9384-6     Document Type: Review
Times cited : (15)

References (53)
  • 1
    • 34249026300 scopus 로고    scopus 로고
    • High-resolution profiling of histone methylations in the human genome
    • 17512414 1:CAS:528:DC%2BD2sXmtFKjsro%3D 10.1016/j.cell.2007.05.009
    • Barski A, Cuddapah S, Cui K et al (2007) High-resolution profiling of histone methylations in the human genome. Cell 129:823-837
    • (2007) Cell , vol.129 , pp. 823-837
    • Barski, A.1    Cuddapah, S.2    Cui, K.3
  • 2
    • 84856239091 scopus 로고    scopus 로고
    • Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development
    • 22231485 1:CAS:528:DC%2BC38XlsFyltw%3D%3D 10.1038/ng.1064
    • Bonn S, Zinzen RP, Girardot C et al (2012) Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development. Nat Genet 44:148-156
    • (2012) Nat Genet , vol.44 , pp. 148-156
    • Bonn, S.1    Zinzen, R.P.2    Girardot, C.3
  • 3
    • 84876836223 scopus 로고    scopus 로고
    • Modification of enhancer chromatin: What, how, and why?
    • 23473601 1:CAS:528:DC%2BC3sXktVOqu7g%3D 10.1016/j.molcel.2013.01.038
    • Calo E, Wysocka J (2013) Modification of enhancer chromatin: what, how, and why? Mol Cell 49:825-837
    • (2013) Mol Cell , vol.49 , pp. 825-837
    • Calo, E.1    Wysocka, J.2
  • 4
    • 34250305146 scopus 로고    scopus 로고
    • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    • 10.1038/nature05874
    • Consortium EP, Birney E, Stamatoyannopoulos JA et al (2007) Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447:799-816
    • (2007) Nature , vol.447 , pp. 799-816
    • Consortium, E.P.1    Birney, E.2    Stamatoyannopoulos, J.A.3
  • 5
    • 57849109058 scopus 로고    scopus 로고
    • Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
    • 19056941 1:CAS:528:DC%2BD1cXhsFSmtrnF 10.1126/science.1162228
    • Core LJ, Waterfall JJ, Lis JT (2008) Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 322:1845-1848
    • (2008) Science , vol.322 , pp. 1845-1848
    • Core, L.J.1    Waterfall, J.J.2    Lis, J.T.3
  • 6
    • 78650758676 scopus 로고    scopus 로고
    • Histone H3K27ac separates active from poised enhancers and predicts developmental state
    • 21106759 1:CAS:528:DC%2BC3cXhs1Wjs7bP 10.1073/pnas.1016071107
    • Creyghton MP, Cheng AW, Welstead GG et al (2010) Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc Natl Acad Sci U S A 107:21931-21936
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 21931-21936
    • Creyghton, M.P.1    Cheng, A.W.2    Welstead, G.G.3
  • 7
    • 77952908743 scopus 로고    scopus 로고
    • A large fraction of extragenic RNA pol II transcription sites overlap enhancers
    • 20485488 10.1371/journal.pbio.1000384
    • De Santa F, Barozzi I, Mietton F et al (2010) A large fraction of extragenic RNA pol II transcription sites overlap enhancers. PLoS Biol 8:e1000384
    • (2010) PLoS Biol , vol.8 , pp. 1000384
    • De Santa, F.1    Barozzi, I.2    Mietton, F.3
  • 8
    • 84865757142 scopus 로고    scopus 로고
    • Landscape of transcription in human cells
    • 22955620 1:CAS:528:DC%2BC38XhtlGnt73M 10.1038/nature11233
    • Djebali S, Davis CA, Merkel A et al (2012) Landscape of transcription in human cells. Nature 489:101-108
    • (2012) Nature , vol.489 , pp. 101-108
    • Djebali, S.1    Davis, C.A.2    Merkel, A.3
  • 9
    • 0035102477 scopus 로고    scopus 로고
    • MLL and CREB bind cooperatively to the nuclear coactivator CREB-binding protein
    • 11259575 1:CAS:528:DC%2BD3MXitVCqtbk%3D 10.1128/MCB.21.7.2249-2258.2001
    • Ernst P, Wang J, Huang M, Goodman RH, Korsmeyer SJ (2001) MLL and CREB bind cooperatively to the nuclear coactivator CREB-binding protein. Mol Cell Biol 21:2249-2258
    • (2001) Mol Cell Biol , vol.21 , pp. 2249-2258
    • Ernst, P.1    Wang, J.2    Huang, M.3    Goodman, R.H.4    Korsmeyer, S.J.5
  • 10
    • 79955583542 scopus 로고    scopus 로고
    • Mapping and analysis of chromatin state dynamics in nine human cell types
    • 21441907 1:CAS:528:DC%2BC3MXjvVOitL0%3D 10.1038/nature09906
    • Ernst J, Kheradpour P, Mikkelsen TS et al (2011) Mapping and analysis of chromatin state dynamics in nine human cell types. Nature 473:43-49
    • (2011) Nature , vol.473 , pp. 43-49
    • Ernst, J.1    Kheradpour, P.2    Mikkelsen, T.S.3
  • 11
    • 70449103609 scopus 로고    scopus 로고
    • An oestrogen-receptor-alpha-bound human chromatin interactome
    • 19890323 1:CAS:528:DC%2BD1MXhtlKkt7fM 10.1038/nature08497
    • Fullwood MJ, Liu MH, Pan YF et al (2009) An oestrogen-receptor-alpha- bound human chromatin interactome. Nature 462:58-64
    • (2009) Nature , vol.462 , pp. 58-64
    • Fullwood, M.J.1    Liu, M.H.2    Pan, Y.F.3
  • 12
    • 0037044756 scopus 로고    scopus 로고
    • Cooperativity in transcription factor binding to the coactivator CREB-binding protein (CBP) - The mixed lineage leukemia protein (MLL) activation domain binds to an allosteric site on the KIX domain
    • 12205094 1:CAS:528:DC%2BD38Xos1emsrY%3D 10.1074/jbc.M207660200
    • Goto NK, Zor T, Martinez-Yamout M, Dyson HJ, Wright PE (2002) Cooperativity in transcription factor binding to the coactivator CREB-binding protein (CBP) - the mixed lineage leukemia protein (MLL) activation domain binds to an allosteric site on the KIX domain. J Biol Chem 277:43168-43174
    • (2002) J Biol Chem , vol.277 , pp. 43168-43174
    • Goto, N.K.1    Zor, T.2    Martinez-Yamout, M.3    Dyson, H.J.4    Wright, P.E.5
  • 13
    • 62249133709 scopus 로고    scopus 로고
    • Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
    • 19182780 1:CAS:528:DC%2BD1MXht1ehsbo%3D 10.1038/nature07672
    • Guttman M, Amit I, Garber M et al (2009) Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 458:223-227
    • (2009) Nature , vol.458 , pp. 223-227
    • Guttman, M.1    Amit, I.2    Garber, M.3
  • 14
    • 84881171344 scopus 로고    scopus 로고
    • Enhancer transcripts mark active estrogen receptor binding sites
    • 23636943 1:CAS:528:DC%2BC3sXhtlSntr%2FI 10.1101/gr.152306.112
    • Hah N, Murakami S, Nagari A, Danko CG, Kraus WL (2013) Enhancer transcripts mark active estrogen receptor binding sites. Genome Res 23:1210-1223
    • (2013) Genome Res , vol.23 , pp. 1210-1223
    • Hah, N.1    Murakami, S.2    Nagari, A.3    Danko, C.G.4    Kraus, W.L.5
  • 15
    • 77950262538 scopus 로고    scopus 로고
    • Nucleosome dynamics define transcriptional enhancers
    • 20208536 1:CAS:528:DC%2BC3cXivVCiu7o%3D 10.1038/ng.545
    • He HH, Meyer CA, Shin H et al (2010) Nucleosome dynamics define transcriptional enhancers. Nat Genet 42:343-347
    • (2010) Nat Genet , vol.42 , pp. 343-347
    • He, H.H.1    Meyer, C.A.2    Shin, H.3
  • 16
    • 33847334699 scopus 로고    scopus 로고
    • Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
    • 17277777 1:CAS:528:DC%2BD2sXitVOksbc%3D 10.1038/ng1966
    • Heintzman ND, Stuart RK, Hon G et al (2007) Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat Genet 39:311-318
    • (2007) Nat Genet , vol.39 , pp. 311-318
    • Heintzman, N.D.1    Stuart, R.K.2    Hon, G.3
  • 17
    • 65549104157 scopus 로고    scopus 로고
    • Histone modifications at human enhancers reflect global cell-type-specific gene expression
    • 19295514 1:CAS:528:DC%2BD1MXjsVCqtbc%3D 10.1038/nature07829
    • Heintzman ND, Hon GC, Hawkins RD et al (2009) Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature 459:108-112
    • (2009) Nature , vol.459 , pp. 108-112
    • Heintzman, N.D.1    Hon, G.C.2    Hawkins, R.D.3
  • 18
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • 20513432 1:CAS:528:DC%2BC3cXns1SlsLc%3D 10.1016/j.molcel.2010.05.004
    • Heinz S, Benner C, Spann N et al (2010) Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 38:576-589
    • (2010) Mol Cell , vol.38 , pp. 576-589
    • Heinz, S.1    Benner, C.2    Spann, N.3
  • 19
    • 33746423865 scopus 로고    scopus 로고
    • Locus control region transcription plays an active role in long-range gene activation
    • 16885026 1:CAS:528:DC%2BD28XovVWlurc%3D 10.1016/j.molcel.2006.05.041
    • Ho Y, Elefant F, Liebhaber SA, Cooke NE (2006) Locus control region transcription plays an active role in long-range gene activation. Mol Cell 23:365-375
    • (2006) Mol Cell , vol.23 , pp. 365-375
    • Ho, Y.1    Elefant, F.2    Liebhaber, S.A.3    Cooke, N.E.4
  • 20
    • 84877252928 scopus 로고    scopus 로고
    • High-throughput identification of long-range regulatory elements and their target promoters in the human genome
    • 23525463 1:CAS:528:DC%2BC3sXntVyjtLw%3D 10.1093/nar/gkt188
    • Hwang YC, Zheng Q, Gregory BD, Wang LS (2013) High-throughput identification of long-range regulatory elements and their target promoters in the human genome. Nucleic Acids Res 41:4835-4846
    • (2013) Nucleic Acids Res , vol.41 , pp. 4835-4846
    • Hwang, Y.C.1    Zheng, Q.2    Gregory, B.D.3    Wang, L.S.4
  • 21
    • 79952184341 scopus 로고    scopus 로고
    • Chromatin accessibility pre-determines glucocorticoid receptor binding patterns
    • 21258342 1:CAS:528:DC%2BC3MXps1ajsA%3D%3D 10.1038/ng.759
    • John S, Sabo PJ, Thurman RE et al (2011) Chromatin accessibility pre-determines glucocorticoid receptor binding patterns. Nat Genet 43:264-U116
    • (2011) Nat Genet , vol.43
    • John, S.1    Sabo, P.J.2    Thurman, R.E.3
  • 22
    • 77957139539 scopus 로고    scopus 로고
    • Mediator and cohesin connect gene expression and chromatin architecture
    • 20720539 1:CAS:528:DC%2BC3cXhtVCmtLzP 10.1038/nature09380
    • Kagey MH, Newman JJ, Bilodeau S et al (2010) Mediator and cohesin connect gene expression and chromatin architecture. Nature 467:430-435
    • (2010) Nature , vol.467 , pp. 430-435
    • Kagey, M.H.1    Newman, J.J.2    Bilodeau, S.3
  • 23
    • 84881526410 scopus 로고    scopus 로고
    • Remodeling of the enhancer landscape during macrophage activation is coupled to enhancer transcription
    • 23932714 1:CAS:528:DC%2BC3sXht1Gmtb3L 10.1016/j.molcel.2013.07.010
    • Kaikkonen MU, Spann NJ, Heinz S et al (2013) Remodeling of the enhancer landscape during macrophage activation is coupled to enhancer transcription. Mol Cell 51:310-325
    • (2013) Mol Cell , vol.51 , pp. 310-325
    • Kaikkonen, M.U.1    Spann, N.J.2    Heinz, S.3
  • 24
    • 34147193819 scopus 로고    scopus 로고
    • Beta-globin intergenic transcription and histone acetylation dependent on an enhancer
    • 17283048 1:CAS:528:DC%2BD2sXkt1OgtLw%3D 10.1128/MCB.02337-06
    • Kim A, Zhao H, Ifrim I, Dean A (2007) Beta-globin intergenic transcription and histone acetylation dependent on an enhancer. Mol Cell Biol 27:2980-2986
    • (2007) Mol Cell Biol , vol.27 , pp. 2980-2986
    • Kim, A.1    Zhao, H.2    Ifrim, I.3    Dean, A.4
  • 25
    • 77952367798 scopus 로고    scopus 로고
    • Widespread transcription at neuronal activity-regulated enhancers
    • 20393465 1:CAS:528:DC%2BC3cXkslartL8%3D 10.1038/nature09033
    • Kim TK, Hemberg M, Gray JM et al (2010) Widespread transcription at neuronal activity-regulated enhancers. Nature 465:182-187
    • (2010) Nature , vol.465 , pp. 182-187
    • Kim, T.K.1    Hemberg, M.2    Gray, J.M.3
  • 26
    • 34250307630 scopus 로고    scopus 로고
    • The landscape of histone modifications across 1% of the human genome in five human cell lines
    • 17567990 1:CAS:528:DC%2BD2sXntVSjs7w%3D 10.1101/gr.5704207
    • Koch CM, Andrews RM, Flicek P et al (2007) The landscape of histone modifications across 1% of the human genome in five human cell lines. Genome Res 17:691-707
    • (2007) Genome Res , vol.17 , pp. 691-707
    • Koch, C.M.1    Andrews, R.M.2    Flicek, P.3
  • 27
    • 79961022267 scopus 로고    scopus 로고
    • Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters
    • 21765417 1:CAS:528:DC%2BC3MXovFyhsLc%3D 10.1038/nsmb.2085
    • Koch F, Fenouil R, Gut M et al (2011) Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters. Nat Struct Mol Biol 18:956-963
    • (2011) Nat Struct Mol Biol , vol.18 , pp. 956-963
    • Koch, F.1    Fenouil, R.2    Gut, M.3
  • 28
    • 84878451215 scopus 로고    scopus 로고
    • Gene regulation by the act of long non-coding RNA transcription
    • 23721193 1:CAS:528:DC%2BC3sXhsFWqsrnP 10.1186/1741-7007-11-59
    • Kornienko AE, Guenzl PM, Barlow DP, Pauler FM (2013) Gene regulation by the act of long non-coding RNA transcription. BMC Biol 11:59
    • (2013) BMC Biol , vol.11 , pp. 59
    • Kornienko, A.E.1    Guenzl, P.M.2    Barlow, D.P.3    Pauler, F.M.4
  • 29
    • 84862778066 scopus 로고    scopus 로고
    • Intragenic enhancers act as alternative promoters
    • 22264824 1:CAS:528:DC%2BC38XjtFWgurs%3D 10.1016/j.molcel.2011.12.021
    • Kowalczyk MS, Hughes JR, Garrick D et al (2012) Intragenic enhancers act as alternative promoters. Mol Cell 45:447-458
    • (2012) Mol Cell , vol.45 , pp. 447-458
    • Kowalczyk, M.S.1    Hughes, J.R.2    Garrick, D.3
  • 30
    • 84874368349 scopus 로고    scopus 로고
    • Activating RNAs associate with Mediator to enhance chromatin architecture and transcription
    • 23417068 1:CAS:528:DC%2BC3sXjtFWjur8%3D 10.1038/nature11884
    • Lai F, Orom UA, Cesaroni M et al (2013) Activating RNAs associate with Mediator to enhance chromatin architecture and transcription. Nature 494:497-501
    • (2013) Nature , vol.494 , pp. 497-501
    • Lai, F.1    Orom, U.A.2    Cesaroni, M.3
  • 31
    • 84879694221 scopus 로고    scopus 로고
    • Rev-Erbs repress macrophage gene expression by inhibiting enhancer-directed transcription
    • 23728303 1:CAS:528:DC%2BC3sXosFWktL0%3D 10.1038/nature12209
    • Lam MT, Cho H, Lesch HP et al (2013) Rev-Erbs repress macrophage gene expression by inhibiting enhancer-directed transcription. Nature 498:511-515
    • (2013) Nature , vol.498 , pp. 511-515
    • Lam, M.T.1    Cho, H.2    Lesch, H.P.3
  • 32
    • 84862908850 scopus 로고    scopus 로고
    • Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
    • 22265404 1:CAS:528:DC%2BC38XhtFKgtrY%3D 10.1016/j.cell.2011.12.014
    • Li G, Ruan X, Auerbach RK et al (2012) Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation. Cell 148:84-98
    • (2012) Cell , vol.148 , pp. 84-98
    • Li, G.1    Ruan, X.2    Auerbach, R.K.3
  • 33
    • 84879695128 scopus 로고    scopus 로고
    • Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation
    • 23728302 1:CAS:528:DC%2BC3sXosFahtro%3D 10.1038/nature12210
    • Li W, Notani D, Ma Q et al (2013) Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation. Nature 498:516-520
    • (2013) Nature , vol.498 , pp. 516-520
    • Li, W.1    Notani, D.2    Ma, Q.3
  • 34
    • 40849085514 scopus 로고    scopus 로고
    • FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription
    • 18358809 1:CAS:528:DC%2BD1cXkt1Wqs7c%3D 10.1016/j.cell.2008.01.018
    • Lupien M, Eeckhoute J, Meyer CA et al (2008) FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription. Cell 132:958-970
    • (2008) Cell , vol.132 , pp. 958-970
    • Lupien, M.1    Eeckhoute, J.2    Meyer, C.A.3
  • 35
    • 84873456575 scopus 로고    scopus 로고
    • ERNAs are required for p53-dependent enhancer activity and gene transcription
    • 23273978 1:CAS:528:DC%2BC3sXnvVyi 10.1016/j.molcel.2012.11.021
    • Melo CA, Drost J, Wijchers PJ et al (2013) eRNAs are required for p53-dependent enhancer activity and gene transcription. Mol Cell 49:524-535
    • (2013) Mol Cell , vol.49 , pp. 524-535
    • Melo, C.A.1    Drost, J.2    Wijchers, P.J.3
  • 36
    • 34547624303 scopus 로고    scopus 로고
    • Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
    • 17603471 1:CAS:528:DC%2BD2sXosVSrtrc%3D 10.1038/nature06008
    • Mikkelsen TS, Ku MC, Jaffe DB et al (2007) Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448:553-U552
    • (2007) Nature , vol.448
    • Mikkelsen, T.S.1    Ku, M.C.2    Jaffe, D.B.3
  • 37
    • 77957243921 scopus 로고    scopus 로고
    • Long noncoding RNAs with enhancer-like function in human cells
    • 20887892 1:CAS:528:DC%2BC3cXht1Cmu73J 10.1016/j.cell.2010.09.001
    • Orom UA, Derrien T, Beringer M et al (2010) Long noncoding RNAs with enhancer-like function in human cells. Cell 143:46-58
    • (2010) Cell , vol.143 , pp. 46-58
    • Orom, U.A.1    Derrien, T.2    Beringer, M.3
  • 38
    • 84872522528 scopus 로고    scopus 로고
    • Latent enhancers activated by stimulation in differentiated cells
    • 23332752 1:CAS:528:DC%2BC3sXht1ygtbo%3D 10.1016/j.cell.2012.12.018
    • Ostuni R, Piccolo V, Barozzi I et al (2013) Latent enhancers activated by stimulation in differentiated cells. Cell 152:157-171
    • (2013) Cell , vol.152 , pp. 157-171
    • Ostuni, R.1    Piccolo, V.2    Barozzi, I.3
  • 39
    • 84861531483 scopus 로고    scopus 로고
    • Overcoming the nucleosome barrier during transcript elongation
    • 22465610 1:CAS:528:DC%2BC38XltVehs74%3D 10.1016/j.tig.2012.02.005
    • Petesch SJ, Lis JT (2012) Overcoming the nucleosome barrier during transcript elongation. Trends Genet 28:285-294
    • (2012) Trends Genet , vol.28 , pp. 285-294
    • Petesch, S.J.1    Lis, J.T.2
  • 40
    • 79951516056 scopus 로고    scopus 로고
    • A unique chromatin signature uncovers early developmental enhancers in humans
    • 21160473 1:CAS:528:DC%2BC3cXhsFKlsr%2FO 10.1038/nature09692
    • Rada-Iglesias A, Bajpai R, Swigut T et al (2011) A unique chromatin signature uncovers early developmental enhancers in humans. Nature 470:279-283
    • (2011) Nature , vol.470 , pp. 279-283
    • Rada-Iglesias, A.1    Bajpai, R.2    Swigut, T.3
  • 41
    • 84870404918 scopus 로고    scopus 로고
    • Large-scale functional organization of long-range chromatin interaction networks
    • 23103170 1:CAS:528:DC%2BC38XhvVWnsrbL 10.1016/j.celrep.2012.09.022
    • Sandhu KS, Li GL, Poh HM et al (2012) Large-scale functional organization of long-range chromatin interaction networks. Cell Rep 2:1207-1219
    • (2012) Cell Rep , vol.2 , pp. 1207-1219
    • Sandhu, K.S.1    Li, G.L.2    Poh, H.M.3
  • 42
    • 84865800494 scopus 로고    scopus 로고
    • The long-range interaction landscape of gene promoters
    • 22955621 1:CAS:528:DC%2BC38XhtlGnsLnM 10.1038/nature11279
    • Sanyal A, Lajoie BR, Jain G, Dekker J (2012) The long-range interaction landscape of gene promoters. Nature 489:109-113
    • (2012) Nature , vol.489 , pp. 109-113
    • Sanyal, A.1    Lajoie, B.R.2    Jain, G.3    Dekker, J.4
  • 43
    • 77951836691 scopus 로고    scopus 로고
    • A CTCF-independent role for cohesin in tissue-specific transcription
    • 20219941 1:CAS:528:DC%2BC3cXlslyis7w%3D 10.1101/gr.100479.109
    • Schmidt D, Schwalie PC, Ross-Innes CS et al (2010) A CTCF-independent role for cohesin in tissue-specific transcription. Genome Res 20:578-588
    • (2010) Genome Res , vol.20 , pp. 578-588
    • Schmidt, D.1    Schwalie, P.C.2    Ross-Innes, C.S.3
  • 44
    • 84865755978 scopus 로고    scopus 로고
    • The accessible chromatin landscape of the human genome
    • 22955617 1:CAS:528:DC%2BC38XhtlGns7bL 10.1038/nature11232
    • Thurman RE, Rynes E, Humbert R et al (2012) The accessible chromatin landscape of the human genome. Nature 489:75-82
    • (2012) Nature , vol.489 , pp. 75-82
    • Thurman, R.E.1    Rynes, E.2    Humbert, R.3
  • 45
    • 77954572735 scopus 로고    scopus 로고
    • Long noncoding RNA as modular scaffold of histone modification complexes
    • 20616235 1:CAS:528:DC%2BC3cXps1ehtb0%3D 10.1126/science.1192002
    • Tsai MC, Manor O, Wan Y et al (2010) Long noncoding RNA as modular scaffold of histone modification complexes. Science 329:689-693
    • (2010) Science , vol.329 , pp. 689-693
    • Tsai, M.C.1    Manor, O.2    Wan, Y.3
  • 46
    • 0026482145 scopus 로고
    • Transcription of the hypersensitive site Hs2 enhancer in erythroid-cells
    • 1454801 1:CAS:528:DyaK3sXnsVKktw%3D%3D 10.1073/pnas.89.23.11219
    • Tuan D, Kong SM, Hu K (1992) Transcription of the hypersensitive site Hs2 enhancer in erythroid-cells. Proc Natl Acad Sci U S A 89:11219-11223
    • (1992) Proc Natl Acad Sci U S A , vol.89 , pp. 11219-11223
    • Tuan, D.1    Kong, S.M.2    Hu, K.3
  • 47
    • 60149091656 scopus 로고    scopus 로고
    • ChIP-seq accurately predicts tissue-specific activity of enhancers
    • 19212405 1:CAS:528:DC%2BD1MXhslCntLg%3D 10.1038/nature07730
    • Visel A, Blow MJ, Li Z et al (2009) ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature 457:854-858
    • (2009) Nature , vol.457 , pp. 854-858
    • Visel, A.1    Blow, M.J.2    Li, Z.3
  • 48
    • 24044540381 scopus 로고    scopus 로고
    • Spatial and temporal recruitment of androgen receptor and its coactivators involves chromosomal looping and polymerase tracking
    • 16137620 1:CAS:528:DC%2BD2MXhtVSkurrL 10.1016/j.molcel.2005.07.018
    • Wang Q, Carroll JS, Brown M (2005) Spatial and temporal recruitment of androgen receptor and its coactivators involves chromosomal looping and polymerase tracking. Mol Cell 19:631-642
    • (2005) Mol Cell , vol.19 , pp. 631-642
    • Wang, Q.1    Carroll, J.S.2    Brown, M.3
  • 49
    • 46249112085 scopus 로고    scopus 로고
    • Combinatorial patterns of histone acetylations and methylations in the human genome
    • 18552846 1:CAS:528:DC%2BD1cXnslKktL0%3D 10.1038/ng.154
    • Wang Z, Zang C, Rosenfeld JA et al (2008) Combinatorial patterns of histone acetylations and methylations in the human genome. Nat Genet 40:897-903
    • (2008) Nat Genet , vol.40 , pp. 897-903
    • Wang, Z.1    Zang, C.2    Rosenfeld, J.A.3
  • 50
    • 79959198166 scopus 로고    scopus 로고
    • Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA
    • 21572438 1:CAS:528:DC%2BC3MXmsFyqsrw%3D 10.1038/nature10006
    • Wang D, Garcia-Bassets I, Benner C et al (2011) Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA. Nature 474:390-+
    • (2011) Nature , vol.474
    • Wang, D.1    Garcia-Bassets, I.2    Benner, C.3
  • 51
    • 84865852567 scopus 로고    scopus 로고
    • Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
    • 22955990 1:CAS:528:DC%2BC38XhtlentLvI 10.1101/gr.139105.112
    • Wang J, Zhuang JL, Iyer S et al (2012) Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors. Genome Res 22:1798-1812
    • (2012) Genome Res , vol.22 , pp. 1798-1812
    • Wang, J.1    Zhuang, J.L.2    Iyer, S.3
  • 52
    • 80455144479 scopus 로고    scopus 로고
    • Pioneer transcription factors: Establishing competence for gene expression
    • 22056668 1:CAS:528:DC%2BC3MXhsFaktLzN 10.1101/gad.176826.111
    • Zaret KS, Carroll JS (2011) Pioneer transcription factors: establishing competence for gene expression. Genes Dev 25:2227-2241
    • (2011) Genes Dev , vol.25 , pp. 2227-2241
    • Zaret, K.S.1    Carroll, J.S.2
  • 53
    • 80051564877 scopus 로고    scopus 로고
    • Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions
    • 21632746 1:CAS:528:DC%2BC3MXpvFeqs7s%3D 10.1101/gr.122382.111
    • Zentner GE, Tesar PJ, Scacheri PC (2011) Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions. Genome Res 21:1273-1283
    • (2011) Genome Res , vol.21 , pp. 1273-1283
    • Zentner, G.E.1    Tesar, P.J.2    Scacheri, P.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.