Linkage mapping, molecular cloning and functional analysis of soybean gene Fg2 encoding flavonol 3-O-glucoside (1 → 6) rhamnosyltransferase

Plant Molecular Biology

Volumn 84, Issue 3, 2014, Pages 287-300

  Rojas Rodas, Felipe ^a   Rodriguez, Tito O ^a   Murai, Yoshinori ^b   Iwashina, Tsukasa ^b   Sugawara, Satoko ^c   Suzuki, Makoto ^c   Nakabayashi, Ryo ^c   Yonekura Sakakibara, Keiko ^c   Saito, Kazuki ^c   Kitajima, Junichi ^d   Toda, Kyoko ^e   Takahashi, Ryoji ^a,e  

^a UNIVERSITY OF TSUKUBA   (Japan)

^b DEPARTMENT OF BOTANY   (Japan)

^c Elements Chemistry Laboratory   (Japan)

^d SHOWA PHARMACEUTICAL UNIVERSITY   (Japan)

^e NATIONAL INSTITUTE OF CROP SCIENCE   (Japan)

Author keywords

Fg2 gene; Flavonol 3 O glucoside (1 6) rhamnosyltransferase; Flavonol glycoside; Glycine max; Soybean

Indexed keywords

GLYCINE MAX;

EID: 84890877625     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-013-0133-1     Document Type: Article

References (46)

1. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
2. Buttery BR, Buzzell RI (1973) Varietal differences in leaf flavonoids of soybeans. Crop Sci 13: 103-106.
3. Buttery BR, Buzzell RI (1975) Soybean flavonol glycosides: identification and biochemical genetics. Can J Bot 53: 219-224.
4. Buttery BR, Buzzell RI (1976) Flavonol glycoside genes and photosynthesis in soybean. Crop Sci 16: 547-550.
5. Buzzell RI (1974) Soybean linkage tests. Soybean Genet Newsl 1: 11-14.
6. Buzzell RI, Buttery BR (1974) Flavonol glycoside genes in soybeans. Can J Genet Cytol 16: 897-899.
7. Buzzell RI, Buttery BR (1977) Inheritance and linkage of a magenta flower gene in soybeans. Can J Genet Cytol 19: 749-751.
8. Buzzell RI, Buttery BR (1992) Inheritance of an anomalous flavonol glycoside gene in soybean. Genome 35: 636-638.
9. Buzzell RI, Buttery BR (1998) Genetics of leaf waviness in soybean. Soybean Genet Newsl 25: 23-24.
10. Chang YF, Imam JS, Wilkinson MF (2007) The nonsense-mediated decay RNA surveillance pathway. Ann Rev Biochem 76: 51-74.
11. Cregan PB, Jarvic T, Bush AL, Shoemaker RC, Lark KG, Kahler AL, Kaya N, VanToai TT, Lohnes DG, Chung J, Specht JE (1999) An integrated genetic map of the soybean genome. Crop Sci 39: 1464-1490.
12. Fehr WR, Caviness CE, Burmood DT, Pennington JS (1971) Stage of development descriptions for soybeans, Glucine max (L.) Merrill. Crop Sci 11: 929-931.
13. Frydman A, Liberman R, Huhman DV, Carnmeli-Weissberg M, Sapir-Mir M, Ophir R, Sumner LW, Eyal Y (2013) The molecular and enzymatic basis of bitter/non-biter flavor of citrus fruit: evolution of branch-forming rhamnosyltransferases under domestication. Plant J 73: 166-178.
14. Githiri SM, Yang D, Khan NA, Xu D, Komatsuda T, Takahashi R (2007) QTL analysis of low temperature-induced browning in soybean seed coats. J Hered 98: 360-366.
15. Hisano H, Sato S, Isobe S, Sasamoto S, Wada T, Matsuno A, Fujishiro T, Yamada M, Nakayama S, Nakamura Y, Watanabe S, Harada K, Tabata S (2007) Characterization of the soybean genome using EST-derived microsatellite markers. DNA Res 14: 271-281.
16. Iwashina T, Benitez ER, Takahashi R (2006a) Analysis of flavonoids in pubescence of soybean near-isogenic lines for pubescence color loci. J Hered 97: 438-443.
17. Iwashina T, Kitajima J, Matsumoto S (2006b) Flavonoids in the species of Cyrtomium (Dryopteridaceae) and related genera. Biochem Syst Ecol 34: 14-24.
18. Iwashina T, Githiri SM, Benitez ER, Takemura T, Kitajima J, Takahashi R (2007) Analysis of flavonoids in flower petals of soybean near-isogenic lines for flower and pubescence color genes. J Hered 98: 250-257.
19. Iwashina T, Oyoo ME, Khan NA, Matsumura H, Takahashi R (2008) Analysis of flavonoids in flower petals of soybean flower color variants. Crop Sci 48: 1918-1924.
20. Iwashina T, Yamaguchi M, Nakayama M, Onozaki T, Yoshida H, Kawanobu S, Ono H, Okamura M (2010) Kaempferol glycosides in the flowers of carnation and their contribution to the creamy white flower color. Nat Prod Commun 5: 1903-1906.
21. Iwata H, Ninomiya S (2006) AntMap: constructing genetic linkage maps using an ant colony optimization algorithm. Breed Sci 56: 371-377.
22. Kroon J, Souer E, de Graaff A, Xue Y, Mol J, Koes R (1994) Cloning and structural analysis of the anthocyanin pigmentation locus Rt of Petuniahybrida: characterization of the insertion sequences in two mutant alleles. Plant J 5: 69-80.
23. Lairson LL, Henrissat B, Davies GJ, Withers SG (2008) Glycosyltransferases: structures, functions, and mechanisms. Annu Rev Biochem 77: 521-555.
24. Mackenzie PI, Owens IS, Burchell B, Bock KW, Bairoch A, Belanger A, Fournel-Gigleux S, Green M, Hum DW, Iyanagi T, Lancet D, Louisot P, Magdalou J, Chowdhury JR, Ritter JK, Schachter H, Tephly TR, Tipton KF, Nebert DW (1997) The UDP glycosyltransferase gene superfamily: recommended nomenclature update based on evolutionary divergence. Pharmacogenetics 7: 255-269.
25. Masada S, Terasawa K, Mizukami H (2007) A single amino acid in the PSPG-box plays an important role in the catalytic function of CaUGT2 (Curcumin glucosyltransferase), a Group D Family 1 glucosyltransferase from Catharanthus roseus. FEBS Lett 581: 2605-2610.
26. Murai Y, Takahashi R, Rojas Rodas F, Kitajima J, Iwashina T (2013) New flavonol triglycosides from the leaves of soybean cultivars. Nat Prod Commun 8: 453-456.
27. Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8: 4321-4325.
28. Page RDM (1996) TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12: 357-358.
29. Paquette S, Møller BL, Bak S (2003) On the origin of family 1 plant glycosyltransferases. Phytochemistry 62: 399-413.
30. Rice-Evans CA, Miller NJ, Bolwell PG, Bramley PM, Pridham JB (1995) The relative antioxidant activities of plant-derived polyphenolic flavonoids. Free Radic Res 22: 375-383.
31. Rode MW, Bernard RL (1975) Inheritance of wavy leaf. Soybean Genet Newsl 2: 42-44.
32. Severin AJ, Woody JL, Bolon YT, Joseph B, Diers BW, Farmer AD, Muehlbauer GJ, Nelson RT, Grant D, Specht JE, Graham MA, Cannon SB, May GD, Vance CP, Shoemaker RC (2010) RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome. BMC Plant Biol 10: 160.
33. Shah DM, Hightower RC, Meagher RB (1983) Genes encoding actin in higher plants: intron positions are highly conserved but the coding sequences are not. J Mol Appl Genet 2: 111-126.
34. Song QJ, Marek LF, Shoemaker RC, Lark KG, Concibido VC, Delannay X, Specht JE, Cregan PB (2004) A new integrated genetic linkage map of the soybean. Theor Appl Genet 109: 122-128.
35. Sunada K, Ito T (1982) Soybean grain quality as affected by low temperature treatments in plants (color of hilum, seed coat cracking) (in Japanese). Rep Hokkaido Branch, Crop Sci Soc Jpn and Hokkaido Branch. Jpn Soc Breed 22: 34.
36. Takahashi R (1997) Association of soybean genes I and T with low-temperature induced seed coat deterioration. Crop Sci 37: 1755-1759.
37. Takahashi R, Asanuma S (1996) Association of T gene with chilling tolerance in soybean. Crop Sci 36: 559-562.
38. Takahashi R, Benitez ER, Funatsuki H, Ohnishi S (2005) Soybean maturity and pubescence color genes improve chilling tolerance. Crop Sci 45: 1387-1393.
39. Takahashi R, Githiri SM, Hatayama K, Dubouzet EG, Shimada N, Aoki T, Ayabe S, Toda K, Matsumura H (2007) A single-base deletion in soybean flavonol synthase gene is associated with magenta flower color. Plant Mol Biol 63: 125-135.
40. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony method. Mol Biol Evol 28: 2731-2739.
41. Toda K, Yang D, Yamanaka N, Watanabe S, Harada K, Takahashi R (2002) A single-base deletion in soybean flavonoid 3′-hydroxylase gene is associated with gray pubescence color. Plant Mol Biol 50: 187-196.
42. Toda K, Takahashi R, Iwashina T, Hajika M (2011) Difference in chilling-induced flavonoid profiles, antioxidant activity and chilling tolerance between soybean near-isogenic lines for pubescence color gene. J Plant Res 124: 173-182.
43. Toda K, Kuroiwa H, Senthil K, Shimada N, Aoki T, Ayabe S, Shimada S, Sakuta M, Miyazaki Y, Takahashi R (2012) The soybean F3′H protein is localized to the tonoplast in the seed coat hilum. Planta 236: 79-89.
44. Vinson JA, Dabbagh YA, Serry MM, Jang JH (1995) Plant flavonoids, especially tea flavones, are powerful antioxidants using an in vitro oxidation model for heart disease. J Agric Food Chem 43: 2800-2802.
45. Yonekura-Sakakibara K, Hanada K (2011) An evolutionary view of functional diversity in family 1 glycosyltransferases. Plant J 66: 182-193.
46. Yonekura-Sakakibara K, Tohge T, Niida R, Saito K (2007) Identification of a flavonol 7-O-rhamnosyltransferase gene determining flavonoid pattern in Arabidopsis by transcriptome coexpression analysis and reverse genetics. J Biol Chem 282: 14932-14941.