A single-base deletion in soybean flavonoid 3′-hydroxylase gene is associated with gray pubescence color

Plant Molecular Biology

Volumn 50, Issue 2, 2002, Pages 187-196

  Toda, Kyoko ^a   Yang, Daijun ^a   Yamanaka, Naoki ^b,c   Watanabe, Satoshi ^b,c   Harada, Kyuya ^b,c   Takahashi, Ryoji ^a  

^a NATIONAL INSTITUTE OF CROP SCIENCE   (Japan)

^b CHIBA UNIVERSITY   (Japan)

^c JAPAN INTERNATIONAL RESEARCH CENTER FOR AGRICULTURAL SCIENCES   (Japan)

Author keywords

Deletion; F3 H; Flavonoid; Flavonoid 3 hydroxylase; P450; Pubescence color; Soybean

Indexed keywords

AMINO ACIDS; CLONING; FRAGRANCES; GENETIC ENGINEERING; GLUCOSE; MORPHOLOGY; POLYPEPTIDES;

HYDROXYLASE GENE; NUCLEOTIDES; POLYMORPHISM; SEGREGATION;

PLANTS (BOTANY);

ARABIDOPSIS; EMBRYOPHYTA; GLYCINE MAX; PETUNIA;

COMPLEMENTARY DNA; CYTOCHROME P450; FLAVONOID 3' HYDROXYLASE; FLAVONOID 3'-HYDROXYLASE; MIXED FUNCTION OXIDASE; PIGMENT; PLANT DNA; PLANT RNA;

ALLELE; AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; CHROMOSOME MAP; CROSS BREEDING; DNA SEQUENCE; ENZYMOLOGY; GENE DELETION; GENE EXPRESSION REGULATION; GENETICS; GENOTYPE; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; MUTATION; NUCLEOTIDE SEQUENCE; RECESSIVE GENE; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; SOYBEAN;

ALLELES; AMINO ACID SEQUENCE; BASE SEQUENCE; CHROMOSOME MAPPING; CLONING, MOLECULAR; CROSSES, GENETIC; CYTOCHROME P-450 ENZYME SYSTEM; DNA, COMPLEMENTARY; DNA, PLANT; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GENE EXPRESSION REGULATION, PLANT; GENES, RECESSIVE; GENOTYPE; MIXED FUNCTION OXYGENASES; MOLECULAR SEQUENCE DATA; MUTATION; PIGMENTS, BIOLOGICAL; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RNA, PLANT; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE DELETION; SEQUENCE HOMOLOGY, AMINO ACID; SEQUENCE HOMOLOGY, NUCLEIC ACID; SOYBEANS;

EID: 0036715644     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1016087221334     Document Type: Article

References (34)

1. Altschul, S.F., Madden, T.L., Schaffer A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl. Acids Res. 25: 3389-3402.
2. Brugliera, F., Barri-Rewell, G., Holton, T.A. and Mason, J.G. 1999. Isolation and characterization of a flavonoid 3′-hydroxylase cDNA clone corresponding to the HT1 locus of Petunia hybrida. Plant J. 19: 441-451.
3. Buttery, B.R. and Buzzell, R.I. 1973. Varietal differences in leaf flavonoids of soybeans. Crop Sci. 13: 103-106.
4. Buttery, B.R. and Buzzell, R.I. 1976. Flavonol glycoside genes and photosynthesis in soybean. Crop Sci. 16: 547-550.
5. Buzzell, R.I. and Buttery, B.R. 1982. Genetics of black pigmentation of soybean seed coats/hila. Soybean Genet. Newsl. 9: 26-29.
6. Daar, I.O. and Maquat, L.E. 1988. Premature translation termination mediates triosephosphate isomerase mRNA degradation. Mol. Cell Biol. 8: 802-813.
7. Dixon, R.A. and Steele, C.L. 1999. Flavonoids and isoflavonoids-a gold mine for metabolic engineering. Trends Plant Sci. 4: 394-400.
8. Dooner, H.K. and Robbins, T.P. 1991. Genetic and developmental control of anthocyanin biosynthesis. Annu. Rev. Genet. 25: 173-199.
9. Durst, F. and O'Keefe, D.P. 1995. Plant cytochromes P450: an overview. Drug Metabol. Drug Interact. 12: 171-187.
10. Fasoula, D.A., Stephens, P.A., Nickell, C.D. and Vodkin, L.O. 1995. Cosegregation of purple-throat flower color with dihydroflavonol reductase polymorphism in soybean. Crop Sci. 35: 1028-1031.
11. Forkmann, G. 1991. Flavonoids as flower pigments: the formation of the natural spectrum and its extension by genetic engineering. Plant Breed. 106: 1-26.
12. Holton, T.A. and Cornish E.C. 1995. Genetics and biochemistry of anthocyanin biosynthesis. Plant Cell 7: 1071-1083.
13. Kouchi, H. and Hata, S. 1993. Isolation and characterization of novel nodulin cDNAs representing genes expressed at early stages of soybean nodule development. Mol. Gen. Genet. 238: 106-119.
14. Lander, E.S., Green, P., Abrahamson, J., Barlow, A., Day, M.J., Lincoln, S.E. and Newberg, L. 1987. Mapmaker: an interactive computer package for constructing primary genetic linkage map of experimental and natural populations. Genomics 1: 174-181.
15. Mizutani, M., Ward, E. and Ohta, D. 1998. Cytochrome P450 super-family in Arabidopsis thaliana: isolation of cDNAs, differential expression, and RFLP mapping of multiple cytochrome P450. Plant Mol. Biol. 37: 39-52.
16. Murray, M.G. and Thompson, W.F. 1980. Rapid isolation of high molecular weight plant DNA. Nucl. Acid Res. 8: 4321-4325.
17. Nicholas, C.D., Lindstrom, J.T. and Vodkin, L.O. 1993. Variation of proline rich cell wall proteins in soybean lines with anthocyanin mutations. Plant Mol. Biol. 21: 145-156.
18. Palmer, R.G. and Kilen, T.C. 1987. Qualitative genetics and cytogenetics. In: J.R. Wilcox (Ed.) Soybeans: Improvement, Production, and Uses, 2nd ed. (Agronomy Monograph 16), ASA, CSSA and SSSA, Madison, WI, pp. 135-209.
19. Ross, J. 1995. mRNA stability in mammalian cells. Microbiol. Rev. 59: 423-450.
20. Schoenbohm, C., Martens, S., Eder, C., Forkmann, G. and Weisshaar, B. 2000. Identification of the Arabidopsis thaliana flavonoid 3́-hydroxylase gene and functional expression of the encoded P450 enzyme. Biol. Chem. 381: 749-753.
21. Schuler, M.A. 1996. Plant cytochrome P450 monooxygenases. Crit. Rev. Plant Sci. 15: 235-284.
22. Shah, D.M., Hightower, R.C. and Meagher, R.B. 1983. Genes encoding actin in higher plants: intron positions are highly conserved but the coding sequences are not. J. Mol. Appl. Genet. 2: 111-126.
23. Shirley, B.W. 1996. Flavonoid biosynthesis: new functions for an old pathway. Trends Plant Sci. 1: 377-382.
24. Stephens, P.A. and Nickell, C.D. 1992. Inheritance of pink flower in soybean. Crop Sci. 32: 1131-1132.
25. Stewart, R.T. and Wentz, J.B. 1930. A defective seed-coat character in soybeans. J. Am. Soc. Agron. 22: 658-662.
26. Sunada, K. and Ito, T. 1982. Soybean grain quality as affected by low temperature treatments in plants (color of hilum, seed coat cracking) (in Japanese). Rep. Hokkaido Branch, Crop Sci. Soc. Jpn./Hokkaido Branch, Jpn. Soc. Breed. 22: 34.
27. Takahashi, R. 1997. Association of soybean genes I and T with low-temperature-induced seed coat deterioration. Crop Sci. 37: 1755-1759.
28. Takahashi, R. and Asanuma, S. 1996. Association of T gene with chilling tolerance in soybean. Crop Sci. 36: 559-562.
29. Takahashi, R. and Shimosaka, E. 1997. cDNA sequence analysis and expression of two cold-regulated genes in soybean. Plant Sci. 123: 93-104.
30. Todd, J.J. and Vodkin, L.O. 1993. Pigmented soybean (Glycine max) seed coat accumulate proanthocyanidins during development. Plant Physiol. 102: 663-670.
31. Todd, J.J. and Vodkin, L.O. 1996. Duplications that suppress and deletions that restore expression from a chalcone synthase multigene family. Plant Cell 8: 687-699.
32. Xu, D.H., Abe, J., Kanazawa, A. and Shimamoto, Y. 2001. Identification of sequence variations by PCR-RFLP and its application to the evaluation of cpDNA diversity in wild and cultivated soybeans. Theor. Appl. Genet. 102: 683-688.
33. Yamanaka, N., Ninomiya, S., Hoshi, M., Tsubokura, Y., Yano, M., Nagamura, Y., Sasaki, T. and Harada, K. 2001. An informative linkage map of soybean reveals QTLs for flowering time, leaflet morphology and regions of segregation distortion. DNA Res. 8: 61-72.
34. Yoshikura, K. and Hamaguchi, Y. 1969. Anthocyanins of black soybeans. Jpn. Soc. Food Nutr. J. 22: 15-18.