메뉴 건너뛰기




Volumn 19, Issue 6, 2014, Pages 2088-2103

Modelling and pathway identification involving the transport mechanism of a complex metabolic system in batch culture

Author keywords

Biological robustness; Complex metabolic system; Constraint transcription; Parallel MPSO; Pathway identification

Indexed keywords

APPROXIMATION ALGORITHMS; BACTERIA; BATCH CELL CULTURE; GLYCEROL; METABOLISM; PARAMETER ESTIMATION; PARTICLE SWARM OPTIMIZATION (PSO); TRANSCRIPTION;

EID: 84890795936     PISSN: 10075704     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cnsns.2013.10.021     Document Type: Article
Times cited : (24)

References (41)
  • 1
    • 77950428343 scopus 로고
    • Synthesis, properties and biodegradability of polyesters based on 1,3-propanediol
    • Witt U., Miiller R.J., Augusta J., Widdecke H., Deckwer W.D. Synthesis, properties and biodegradability of polyesters based on 1,3-propanediol. Macromol Chem Phys 1994, 195:793-802.
    • (1994) Macromol Chem Phys , vol.195 , pp. 793-802
    • Witt, U.1    Miiller, R.J.2    Augusta, J.3    Widdecke, H.4    Deckwer, W.D.5
  • 2
    • 0026567844 scopus 로고
    • Glycerol conversion to 1,3-propanediol by newly isolated clostridia
    • Biebl H., Marten S., Hippe H., Deckwer W.D. Glycerol conversion to 1,3-propanediol by newly isolated clostridia. Appl Microbiol Biotechnol 1992, 36:592-597.
    • (1992) Appl Microbiol Biotechnol , vol.36 , pp. 592-597
    • Biebl, H.1    Marten, S.2    Hippe, H.3    Deckwer, W.D.4
  • 3
    • 0142027026 scopus 로고    scopus 로고
    • Metabolic engineering for the microbial production of 1,3-propanediol
    • Nakamura C.E., Whited G.M. Metabolic engineering for the microbial production of 1,3-propanediol. Curr Opin Biotechnol 2003, 14:454-459.
    • (2003) Curr Opin Biotechnol , vol.14 , pp. 454-459
    • Nakamura, C.E.1    Whited, G.M.2
  • 4
    • 79955484212 scopus 로고
    • Mikrobielle herstellung von 1,3-propandiol durch Clostridium butyricum und adsorptive Abtremutng von Diolen
    • Ph.D. dissertation, TU Braunschweig, Germany;
    • Gtinzel B. Mikrobielle herstellung von 1,3-propandiol durch Clostridium butyricum und adsorptive Abtremutng von Diolen. Ph.D. dissertation, TU Braunschweig, Germany; 1991.
    • (1991)
    • Gtinzel, B.1
  • 6
    • 0028485952 scopus 로고
    • Multiple product inhibition and growth modeling of Clostridium butyricum and Klebsiella pneumoniae in fermentation
    • Zeng A.P., Rose A., Biebl H., Tag C., Guenzel B., Deckwer W.D. Multiple product inhibition and growth modeling of Clostridium butyricum and Klebsiella pneumoniae in fermentation. Biotechnol Bioeng 1994, 44:902-911.
    • (1994) Biotechnol Bioeng , vol.44 , pp. 902-911
    • Zeng, A.P.1    Rose, A.2    Biebl, H.3    Tag, C.4    Guenzel, B.5    Deckwer, W.D.6
  • 7
    • 0029294162 scopus 로고
    • A kinetic model for product formation of microbial and mammalian cells
    • Zeng A.P. A kinetic model for product formation of microbial and mammalian cells. Biotechnol Bioeng 1995, 46:314-324.
    • (1995) Biotechnol Bioeng , vol.46 , pp. 314-324
    • Zeng, A.P.1
  • 8
    • 80052571969 scopus 로고    scopus 로고
    • Optimal control for multistage nonlinear dynamic system of microbial bioconversion in batch culture
    • 11p [Article ID 624516]
    • Wang L., Xiu Z.L., Zhang Y.D., Feng E.M. Optimal control for multistage nonlinear dynamic system of microbial bioconversion in batch culture. J Appl Math 2011, 11p [Article ID 624516]. 10.1155/2011/624516.
    • (2011) J Appl Math
    • Wang, L.1    Xiu, Z.L.2    Zhang, Y.D.3    Feng, E.M.4
  • 9
    • 68749108097 scopus 로고    scopus 로고
    • An improved model for multistage simulation of glycerol fermentation in batch culture and its parameter identification
    • Wang L., Feng E.M., Ye J.X., Xiu Z.L. An improved model for multistage simulation of glycerol fermentation in batch culture and its parameter identification. Nonlinear Anal Hybrid Syst 2009, 3:455-462.
    • (2009) Nonlinear Anal Hybrid Syst , vol.3 , pp. 455-462
    • Wang, L.1    Feng, E.M.2    Ye, J.X.3    Xiu, Z.L.4
  • 10
    • 84856217145 scopus 로고    scopus 로고
    • Sensitivity analysis and identification of kinetic parameters in batch fermentation of glycerol
    • Wang J., Ye J.X., Yin H.C., Feng E.M., Wang L. Sensitivity analysis and identification of kinetic parameters in batch fermentation of glycerol. J Comput Appl Math 2012, 236:2268-2276.
    • (2012) J Comput Appl Math , vol.236 , pp. 2268-2276
    • Wang, J.1    Ye, J.X.2    Yin, H.C.3    Feng, E.M.4    Wang, L.5
  • 11
    • 84873327927 scopus 로고    scopus 로고
    • Modeling nonlinear stochastic kinetic system and stochastic optimal control of microbial bioconversion process in batch culture
    • Wang L., Feng E.M., Xiu Z.L. Modeling nonlinear stochastic kinetic system and stochastic optimal control of microbial bioconversion process in batch culture. Nonlinear Anal Model 2013, 18:99-111.
    • (2013) Nonlinear Anal Model , vol.18 , pp. 99-111
    • Wang, L.1    Feng, E.M.2    Xiu, Z.L.3
  • 12
    • 0030797355 scopus 로고    scopus 로고
    • Robustness in simple biochemical networks
    • Barkai N., Leibler S. Robustness in simple biochemical networks. Nature 1997, 387:913-917.
    • (1997) Nature , vol.387 , pp. 913-917
    • Barkai, N.1    Leibler, S.2
  • 13
    • 7644238181 scopus 로고    scopus 로고
    • Biological robustness
    • Kitano H. Biological robustness. Nat Rev Genet 2004, 5:826-837.
    • (2004) Nat Rev Genet , vol.5 , pp. 826-837
    • Kitano, H.1
  • 14
    • 34548825690 scopus 로고    scopus 로고
    • Towards a theory of biological robustness
    • Kitano H. Towards a theory of biological robustness. Mol Syst Biol 2007, 3:137.
    • (2007) Mol Syst Biol , vol.3 , pp. 137
    • Kitano, H.1
  • 15
    • 27644531990 scopus 로고    scopus 로고
    • Determining the flexibility of regular and chaotic attractors
    • Marhl M., Perc M. Determining the flexibility of regular and chaotic attractors. Chaos Soliton Fractals 2006, 28:822-833.
    • (2006) Chaos Soliton Fractals , vol.28 , pp. 822-833
    • Marhl, M.1    Perc, M.2
  • 16
    • 0038109029 scopus 로고    scopus 로고
    • Sensitivity and flexibility of regular and chaotic calcium oscillations
    • Perc M., Marhl M. Sensitivity and flexibility of regular and chaotic calcium oscillations. Biophys Chem 2003, 104:509-522.
    • (2003) Biophys Chem , vol.104 , pp. 509-522
    • Perc, M.1    Marhl, M.2
  • 17
    • 70349503556 scopus 로고    scopus 로고
    • Spike latency and jitter of neuronal membrane patches with stochastic Hodgkin-Huxley channels
    • Ozer M., Uzuntarla M., Perc M., Graham L.J. Spike latency and jitter of neuronal membrane patches with stochastic Hodgkin-Huxley channels. J Theor Biol 2009, 261:83-92.
    • (2009) J Theor Biol , vol.261 , pp. 83-92
    • Ozer, M.1    Uzuntarla, M.2    Perc, M.3    Graham, L.J.4
  • 19
    • 77951977907 scopus 로고    scopus 로고
    • Importance of cell variability for calcium signaling in rat airway myocytes
    • Marhl M., Gosak M., Perc M., Roux E. Importance of cell variability for calcium signaling in rat airway myocytes. Biophys Chem 2010, 148:42-50.
    • (2010) Biophys Chem , vol.148 , pp. 42-50
    • Marhl, M.1    Gosak, M.2    Perc, M.3    Roux, E.4
  • 21
    • 84866905857 scopus 로고    scopus 로고
    • Modeling the seasonal adaptation of circadian clocks by changes in the network structure of the suprachiasmatic nucleus
    • [PLoS ONE]
    • Bodenstein C., Gosak M., Schuster S., Marhl M., Perc M. Modeling the seasonal adaptation of circadian clocks by changes in the network structure of the suprachiasmatic nucleus. Comput Biol 2012, 8:e1002697. [PLoS ONE].
    • (2012) Comput Biol , vol.8
    • Bodenstein, C.1    Gosak, M.2    Schuster, S.3    Marhl, M.4    Perc, M.5
  • 22
    • 80052613184 scopus 로고    scopus 로고
    • Robust analysis of hybrid dynamical systems for 1,3-propanediol transport mechanisms in microbial continuous fermentation
    • Zhang Y.D., Feng E.M., Xiu Z.L. Robust analysis of hybrid dynamical systems for 1,3-propanediol transport mechanisms in microbial continuous fermentation. Math Comput Model 2011, 54:3164-3171.
    • (2011) Math Comput Model , vol.54 , pp. 3164-3171
    • Zhang, Y.D.1    Feng, E.M.2    Xiu, Z.L.3
  • 23
    • 84860379169 scopus 로고    scopus 로고
    • Identification and robustness analysis of nonlinear hybrid dynamical system concerning glycerol transport mechanism
    • Yan H.H., Zhang X., Ye J.X., Feng E.M. Identification and robustness analysis of nonlinear hybrid dynamical system concerning glycerol transport mechanism. Comput Chem Eng 2012, 40:171-180.
    • (2012) Comput Chem Eng , vol.40 , pp. 171-180
    • Yan, H.H.1    Zhang, X.2    Ye, J.X.3    Feng, E.M.4
  • 24
    • 36749093014 scopus 로고    scopus 로고
    • Mathematica modeling of glycerol fermentation by Klebsiella pneumoniae: concerning enzyme-catalytic reductive pathway and transport of glycerol and 1,3-propanediol across cell membrane
    • Sun Y.Q., Qi W.T., Teng H., Xiu Z.L., Zeng A.P. Mathematica modeling of glycerol fermentation by Klebsiella pneumoniae: concerning enzyme-catalytic reductive pathway and transport of glycerol and 1,3-propanediol across cell membrane. Biochem Eng J 2008, 38:22-32.
    • (2008) Biochem Eng J , vol.38 , pp. 22-32
    • Sun, Y.Q.1    Qi, W.T.2    Teng, H.3    Xiu, Z.L.4    Zeng, A.P.5
  • 25
    • 0037360376 scopus 로고    scopus 로고
    • Comparative genomic analysis of DHA regulon and related genes for anaerobic glycerol metabolism in bacteria
    • Sun J., Heuvel J., Soucaille P., Qu Y., Zeng A.P. Comparative genomic analysis of DHA regulon and related genes for anaerobic glycerol metabolism in bacteria. Biotechnol Prog 2003, 19:263-272.
    • (2003) Biotechnol Prog , vol.19 , pp. 263-272
    • Sun, J.1    Heuvel, J.2    Soucaille, P.3    Qu, Y.4    Zeng, A.P.5
  • 26
    • 47649128785 scopus 로고
    • H-stability for nonlinear perturbed systems
    • Choi S.K., Koo N.J. H-stability for nonlinear perturbed systems. Ann Differ Equ 1995, 11:1-9.
    • (1995) Ann Differ Equ , vol.11 , pp. 1-9
    • Choi, S.K.1    Koo, N.J.2
  • 29
    • 84874065774 scopus 로고    scopus 로고
    • Robust identification and its properties of nonlinear bilevel multi-stage dynamic system
    • Jiang Z.G., Yuan J.L., Feng E.M. Robust identification and its properties of nonlinear bilevel multi-stage dynamic system. Appl Math Comput 2013, 219:6979-6985.
    • (2013) Appl Math Comput , vol.219 , pp. 6979-6985
    • Jiang, Z.G.1    Yuan, J.L.2    Feng, E.M.3
  • 30
    • 84880133736 scopus 로고    scopus 로고
    • Determining the transport mechanism of an enzyme-catalytic complex metabolic network based on biological robustness
    • Wang L. Determining the transport mechanism of an enzyme-catalytic complex metabolic network based on biological robustness. Bioprocess Biosyst Eng 2013, 36:433-441.
    • (2013) Bioprocess Biosyst Eng , vol.36 , pp. 433-441
    • Wang, L.1
  • 31
    • 84859731375 scopus 로고    scopus 로고
    • Modelling and regularity of nonlinear impulsive switching dynamical system in fed-batch culture
    • 15p [Article ID 295627]
    • Wang L. Modelling and regularity of nonlinear impulsive switching dynamical system in fed-batch culture. Abstr Appl Anal 2012, 2012. 15p [Article ID 295627]. 10.1155/2012/295627.
    • (2012) Abstr Appl Anal , vol.2012
    • Wang, L.1
  • 32
    • 84861702022 scopus 로고    scopus 로고
    • Particle swarm optimization with chaotic opposition-based population initialization and stochastic search technique
    • Gao W.F., Liu S.Y., Huang L.L. Particle swarm optimization with chaotic opposition-based population initialization and stochastic search technique. Commun Nonlinear Sci Numer Simul 2012, 17:4316-4327.
    • (2012) Commun Nonlinear Sci Numer Simul , vol.17 , pp. 4316-4327
    • Gao, W.F.1    Liu, S.Y.2    Huang, L.L.3
  • 34
    • 79960031921 scopus 로고    scopus 로고
    • Resolution of the stochastic strategy spatial prisoner's dilemma by means of particle swarm optimization
    • [PLoS ONE]
    • Zhang J., Zhang C., Chu T., Perc M. Resolution of the stochastic strategy spatial prisoner's dilemma by means of particle swarm optimization. Comput Biol 2011, 6(7):e21787. [PLoS ONE].
    • (2011) Comput Biol , vol.6 , Issue.7
    • Zhang, J.1    Zhang, C.2    Chu, T.3    Perc, M.4
  • 35
    • 0029535737 scopus 로고
    • Particle swarm optimization. In: Proceedings of IEEE international conference on neural networks
    • NJ
    • Kennedy J, Eberhart R. Particle swarm optimization. In: Proceedings of IEEE international conference on neural networks. Piscataway, NJ; 1995. p. 1942-8.
    • (1995) Piscataway , pp. 1942-1948
    • Kennedy, J.1    Eberhart, R.2
  • 36
    • 84855893824 scopus 로고    scopus 로고
    • A novel particle swarm optimization algorithm based on particle migration
    • Ma G., Zhou W., Chang X.L. A novel particle swarm optimization algorithm based on particle migration. Appl Math Comput 2012, 218:6620-6626.
    • (2012) Appl Math Comput , vol.218 , pp. 6620-6626
    • Ma, G.1    Zhou, W.2    Chang, X.L.3
  • 38
    • 79951576549 scopus 로고    scopus 로고
    • Parallel hash function construction based on coupled map lattices
    • Wang Y., Wong K.W., Xiao D. Parallel hash function construction based on coupled map lattices. Commun Nonlinear Sci Numer Simul 2011, 16:2810-2821.
    • (2011) Commun Nonlinear Sci Numer Simul , vol.16 , pp. 2810-2821
    • Wang, Y.1    Wong, K.W.2    Xiao, D.3
  • 39
    • 84871968311 scopus 로고    scopus 로고
    • Parameter identification for elasto-plastic modelling of unsaturated soils from pressuremeter tests by parallel modified particle swarm optimization
    • Zhang Y.L., Gallipoli D., Augarde C. Parameter identification for elasto-plastic modelling of unsaturated soils from pressuremeter tests by parallel modified particle swarm optimization. Comput Geotech 2013, 48:293-303.
    • (2013) Comput Geotech , vol.48 , pp. 293-303
    • Zhang, Y.L.1    Gallipoli, D.2    Augarde, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.