Importance of cell variability for calcium signaling in rat airway myocytes

Biophysical Chemistry

Volumn 148, Issue 1-3, 2010, Pages 42-50

  Marhl, Marko ^a   Gosak, Marko ^a   Perc, Matjaž ^a   Roux, Etienne ^b,c  

^a UNIVERSITY OF MARIBOR   (Slovenia)

^b UNIVERSITÉ DE BORDEAUX   (France)

^c CENTRE DE RECHERCHE CARDIO THORACIQUE DE BORDEAUX   (France)

Author keywords

Airway smooth muscle cell; Calcium signaling; Cell variability; Sensitivity analysis; Stochastic effects

Indexed keywords

CAFFEINE; CALCIUM ION;

ANALYTIC METHOD; ANIMAL CELL; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BREATHING MUSCLE; CALCIUM SIGNALING; CALCULATION; CELL ISOLATION; CELL STIMULATION; CONTROLLED STUDY; EXPERIMENTAL ANIMAL; EXPERIMENTAL STUDY; MALE; NONHUMAN; PRIORITY JOURNAL; RAT; SENSITIVITY ANALYSIS; SMOOTH MUSCLE FIBER; STOCHASTIC MODEL;

ANIMALS; CAFFEINE; CALCIUM SIGNALING; MALE; MODELS, BIOLOGICAL; MUSCLE CELLS; RATS; RATS, WISTAR; RESPIRATORY SYSTEM; STOCHASTIC PROCESSES;

RATTUS;

EID: 77951977907     PISSN: 03014622     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bpc.2010.02.006     Document Type: Article

References (51)

1. Schuster S., Klipp E., Marhl M. The predictive power of molecular network modelling: case studies of predictions with subsequent experimental verification. Discovering biomolecular mechanisms with computational biology 2006, 95. Springer, New York. F. Eisenhaber (Ed.).
2. 2+ signaling differentiation during oocyte maturation. Cell Calcium 2007, 42:556-564.
3. McKay R.D. The origins of cellular diversity in the mammalian central nervous system. Cell 1989, 58:815-821.
4. Häusser M., Spruston N., Stuart G.J. Diversity and dynamics of dendritic signaling. Science 2000, 290:739-744.
5. 2+ wave propagation. Biophys. Chemist. 2009, 139:53-56.
6. Chen H., Zhang J., Liu J. Structural-diversity-enhanced cellular ability to detect subthreshold extracellular signals. Phys. Rev. E 2007, 75:041910.
7. Maurya M.R., Subramaniam S. A kinetic model for calcium dynamics in RAW 264.7 cells: 1. Mechanisms, parameters, and subpopulational variability. Biophys. J. 2007, 93:709-728.
8. Heinrich R., Schuster S. The Regulation of Cellular Systems 1996, Chapman & Hall, New York.
9. Cascente M., Boros L.G., Comin-Anduix B., de Atauri P., Centelles J.J., Lee P.W.-N. Metabolic control analysis in drug discovery and disease. Nat. Biotechnol. 2002, 20:243-249.
10. Reijenga K.A., Westerhoff H.V., Kholodenko B.N., Snoep J.L. Control analysis for autonomously oscillating biochemical networks. Biophys. J. 2002, 82:99-108.
11. Ingalls B.P., Sauro H.M. Sensitivity analysis of stoichiometric networks: an extension of metabolic control analysis to non-steady state trajectories. J. Theor. Biol. 2003, 222:23-36.
12. Perc M., Marhl M. Sensitivity and flexibility of regular and chaotic calcium oscillations. Biophys. Chemist. 2003, 104:509-522.
13. Ihekwaba A.E.C., Broomhead D.S., Grimley R.L., Benson N., Kell D.B. Sensitivity analysis of parameters controlling oscillatory signalling in the NF-kB pathway: the roles of IKK and IkBa. Syst. Biol. 2004, 1:93-103.
14. Zak D.E., Stelling J., Doyle F.J. Sensitivity analysis of oscillatory (bio)chemical systems. Comput. Chem. Eng. 2005, 29:663-673.
15. Dzbek J., Korzeniewski B. Control over action potential, calcium peak and average fluxes in the cyclic quasi-steady-state ion transport system in cardiac myocytes: in silico studies. Biochem. J. 2007, 404:227-233.
16. Glass L. Synchronization and rhythmic processes in physiology. Nature 2001, 410:277-284.
17. Rao C.V., Wolf D.M., Arkin A.P. Control, exploitation and tolerance of intracellular noise. Nature 2002, 420:231-237.
18. Grima R., Schnell S. Modelling reaction kinetics inside cells. Essays Biochem. 2008, 45:41-56.
19. Gonze D., Halloy J., Goldbeter A. Deterministic versus stochastic models for circadian rhythms. J. Biol. Phys. 2002, 28:637-653.
20. Kærn M., Elston T.C., Blake W.J., Collins J.J. Stochasticity in gene expression: from theories to phenotypes. Nature 2005, 6:451-464.
21. Forger D.B., Peskin C.S. Stochastic simulation of the mammalian circadian clock. Proc. Natl. Acad. Sci. 2005, 102:321-324.
22. Yoda M., Ushikubo T., Inoue W., Sasai M. Roles of noise in single and coupled multiple genetic oscillators. J. Chem. Phys. 2007, 126:115101.
23. Li Q., Li H. Internal noise-driven circadian oscillator in Drosophila. Biophys. Chemist. 2009, 145:57-63.
24. Kummer U., Krajnc B., Pahle J., Green A.K., Dixon C.J., Marhl M. Transition from stochastic to deterministic behavior in calcium oscillations. Biophys. J. 2005, 89:1603-1611.
25. Perc M., Gosak M., Marhl M. From stochasticity to determinism in the collective dynamics of diffusively coupled cells. Chem. Phys. Lett. 2006, 421:106-110.
26. Perc M., Green A.K., Dixon C.J., Marhl M. Establishing the stochastic nature of intracellular calcium oscillations from experimental data. Biophys. Chemist. 2008, 132:33-38.
27. 2+ dynamics in hepatocytes. Biophys. J. 2008, 95:2193-2202.
28. 2+ oscillate: by chance or by the clock?. Biophys. J. 2008, 94:2404-2411.
29. Perc M., Rupnik M., Gosak M., Marhl M. Prevalence of stochasticity in experimentally observed responses of pancreatic acinar cells to acetylcholine. Chaos 2009, 19:037113.
30. Gracheva M.E., Toral R., Gunton J.D. Stochastic simulation of intercellular calcium spiking in hepatocytes. J. Theor. Biol. 2001, 212:111-125.
31. Shuai J.W., Jung P. Optimal intracellular calcium signaling. Phys. Rev. Lett. 2002, 88:068102.
32. 2+ signaling. Adv. Phys. 2004, 53:255-440.
33. Li H., Hou Z., Xin H. Internal noise stochastic resonance for intracellular calcium oscillations in a cell system. Phys. Rev. E 2005, 71:061916.
34. Perc M., Gosak M., Marhl M. Periodic calcium waves in coupled cells induced by internal noise. Chem. Phys. Lett. 2007, 437:143-147.
35. Zhu C.-L., Jia Y., Liu Q., Yang L.-J., Zhan X. A mesoscopic stochastic mechanism of cytosolic calcium oscillations. Biophys. Chemist. 2007, 125:201-212.
36. Ji L., Lang X., Li Y., Li Q. Stimulus perturbation induced signal: a case study in mesoscopic intracellular calcium system. Biophys. Chemist. 2009, 141:231-235.
37. Bootman M.D., Berridge M., Lipp P. Cooking with calcium: the recipes for composing global signals from elementary events. Cell 1997, 91:367-373.
38. 2+ signals: How molecular properties shape global signals. Chaos 2009, 19:037111.
39. Damjanovich S., Benea L., Matkóa J., Mátyusa L., Krasznai Z., Szabo G., Pieri C., Gáspar R., Szöllösi J. Two-dimensional receptor patterns in the plasma membrane of cells. A critical evaluation of their identification, origin and information content. Biophys. Chemist. 1999, 82:99-108.
40. 2+ release of inositol 1, 4, 5-trisphosphate receptor clusters. Biophys. J. 2002, 83:87-97.
41. Shuai J.W., Jung P. Optimal ion channel clustering for intracellular calcium signaling. Proc. Natl. Acad. Sci. 2003, 100:506-510.
42. 2+ oscillations. Chaos 2009, 19:037112.
43. 2+ removal airway myocytes. Biophys. J. 2004, 86:2583-2595.
44. Gillespie D.T. Exact stochastic simulation of coupled reaction. J. Phys. Chem. 1977, 81:2340-2361.
45. Gillespie D.T. Stochastic simulation of chemical kinetics. Annu. Rev. Phys. Chem. 2007, 58:35-55.
46. Chen-Izu Y., McCulle S., Ward C., Soeller C., Allen B.M., Rabang C., Cannell M.B., Blake C.W., Leighton T.I. Three-dimensional distribution of ryanodine receptor clusters in cardiac myocytes. Biophys. J. 2006, 91:1-13.
47. Roux E., Hyvelin J.M., Savineau J.P., Marthan R. Calcium signaling in airway smooth muscle cells is altered by in vitro exposure to the aldehyde acrolein. Am. J. Respir. Cell. Mol. Biol. 1998, 19:437-444.
48. i oscillations induced by muscarinic stimulation in airway smooth muscle cells: receptor subtypes and correlation with the mechanical activity. Br. J. Pharmacol. 1997, 120:1294-1301.
49. Roux E., Duvert M., Marthan R. Combined effect of chronic hypoxia and in vitro exposure to gas pollutants on airway reactivity. Am. J. Physiol. Lung. Cell. Mol. Physiol. 2002, 283:L628-L635.
50. Mounkaila B., Marthan R., Roux E. Biphasic effect of extracellular ATP on human and rat airways is due to multiple P2 purinoceptor activation. Respir. Res. 2005, 6:143.
51. Ouedraogo N., Roux E., Forestier F., Rossetti M., Savineau J.P., Marthan R. Effects of intravenous anesthetics on normal and passively sensitized human isolated airway smooth muscle. Anesthesiology 1998, 88:317-326.