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Volumn 14, Issue 1, 2013, Pages

Transcriptome-wide profiling and expression analysis of transcription factor families in a liverwort, Marchantia polymorpha

Author keywords

Evolution; Liverwort; Marchantia polymorpha transcriptome; Transcription factor

Indexed keywords

RNA; TRANSCRIPTION FACTOR; TRANSCRIPTOME;

EID: 84890598382     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-915     Document Type: Article
Times cited : (23)

References (110)
  • 1
    • 79953254420 scopus 로고    scopus 로고
    • Evolutionary and comparative analysis of MYB and bHLH plant transcription factors
    • 10.1111/j.1365-313X.2010.04459.x, 21443626
    • Feller A, Machemer K, Braun EL, Grotewold E. Evolutionary and comparative analysis of MYB and bHLH plant transcription factors. Plant J 2011, 66(1):94-116. 10.1111/j.1365-313X.2010.04459.x, 21443626.
    • (2011) Plant J , vol.66 , Issue.1 , pp. 94-116
    • Feller, A.1    Machemer, K.2    Braun, E.L.3    Grotewold, E.4
  • 2
    • 77958506746 scopus 로고    scopus 로고
    • Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: a timeline of loss, gain, expansion, and correlation with complexity
    • 10.1093/gbe/evq032, 2997552, 20644220
    • Lang D, Weiche B, Timmerhaus G, Richardt S, Riano-Pachon DM, Correa LG, Reski R, Mueller-Roeber B, Rensing SA. Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: a timeline of loss, gain, expansion, and correlation with complexity. Genome Biol Evol 2010, 2:488-503. 10.1093/gbe/evq032, 2997552, 20644220.
    • (2010) Genome Biol Evol , vol.2 , pp. 488-503
    • Lang, D.1    Weiche, B.2    Timmerhaus, G.3    Richardt, S.4    Riano-Pachon, D.M.5    Correa, L.G.6    Reski, R.7    Mueller-Roeber, B.8    Rensing, S.A.9
  • 3
    • 53749085372 scopus 로고    scopus 로고
    • The rules of gene expression in plants: organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana
    • 10.1186/1471-2164-9-438, 2566314, 18811951
    • Aceituno FF, Moseyko N, Rhee SY, Gutierrez RA. The rules of gene expression in plants: organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana. BMC Genomics 2008, 9:438. 10.1186/1471-2164-9-438, 2566314, 18811951.
    • (2008) BMC Genomics , vol.9 , pp. 438
    • Aceituno, F.F.1    Moseyko, N.2    Rhee, S.Y.3    Gutierrez, R.A.4
  • 4
    • 33646502826 scopus 로고    scopus 로고
    • The transcriptional regulatory code of eukaryotic cells-insights from genome-wide analysis of chromatin organization and transcription factor binding
    • 10.1016/j.ceb.2006.04.002, 16647254
    • Barrera LO, Ren B. The transcriptional regulatory code of eukaryotic cells-insights from genome-wide analysis of chromatin organization and transcription factor binding. Curr Opin Cell Biol 2006, 18(3):291-298. 10.1016/j.ceb.2006.04.002, 16647254.
    • (2006) Curr Opin Cell Biol , vol.18 , Issue.3 , pp. 291-298
    • Barrera, L.O.1    Ren, B.2
  • 5
    • 80054694145 scopus 로고    scopus 로고
    • In silico analysis of transcription factor repertoires and prediction of stress-responsive transcription factors from six major gramineae plants
    • 10.1093/dnares/dsr019, 3190953, 21729923
    • Mochida K, Yoshida T, Sakurai T, Yamaguchi-Shinozaki K, Shinozaki K, Tran LS. In silico analysis of transcription factor repertoires and prediction of stress-responsive transcription factors from six major gramineae plants. DNA Res 2011, 18(5):321-332. 10.1093/dnares/dsr019, 3190953, 21729923.
    • (2011) DNA Res , vol.18 , Issue.5 , pp. 321-332
    • Mochida, K.1    Yoshida, T.2    Sakurai, T.3    Yamaguchi-Shinozaki, K.4    Shinozaki, K.5    Tran, L.S.6
  • 6
    • 77349121836 scopus 로고    scopus 로고
    • Determination of sexual organ development
    • 10.1007/s00497-009-0126-z, 20033226
    • Airoldi CA. Determination of sexual organ development. Sex Plant Reprod 2010, 23(1):53-62. 10.1007/s00497-009-0126-z, 20033226.
    • (2010) Sex Plant Reprod , vol.23 , Issue.1 , pp. 53-62
    • Airoldi, C.A.1
  • 7
    • 0026532613 scopus 로고
    • Plant transcription factors: present knowledge and future challenges
    • 10.1016/0168-9525(92)90020-5, 1369731
    • Katagiri F, Chua NH. Plant transcription factors: present knowledge and future challenges. Trends Genet 1992, 8(1):22-27. 10.1016/0168-9525(92)90020-5, 1369731.
    • (1992) Trends Genet , vol.8 , Issue.1 , pp. 22-27
    • Katagiri, F.1    Chua, N.H.2
  • 8
    • 33644794386 scopus 로고    scopus 로고
    • Transcription factor families have much higher expansion rates in plants than in animals
    • 10.1104/pp.105.065110, 1203354, 16166257
    • Shiu SH, Shih MC, Li WH. Transcription factor families have much higher expansion rates in plants than in animals. Plant Physiol 2005, 139(1):18-26. 10.1104/pp.105.065110, 1203354, 16166257.
    • (2005) Plant Physiol , vol.139 , Issue.1 , pp. 18-26
    • Shiu, S.H.1    Shih, M.C.2    Li, W.H.3
  • 9
    • 0035931911 scopus 로고    scopus 로고
    • Chance and necessity: the evolution of morphological complexity and diversity
    • 10.1038/35059227, 11234024
    • Carroll SB. Chance and necessity: the evolution of morphological complexity and diversity. Nature 2001, 409(6823):1102-1109. 10.1038/35059227, 11234024.
    • (2001) Nature , vol.409 , Issue.6823 , pp. 1102-1109
    • Carroll, S.B.1
  • 10
    • 4444301196 scopus 로고    scopus 로고
    • Phylogenetic profiling of the arabidopsis thaliana proteome: what proteins distinguish plants from other organisms?
    • 10.1186/gb-2004-5-8-r53, 507878, 15287975
    • Gutierrez RA, Green PJ, Keegstra K, Ohlrogge JB. Phylogenetic profiling of the arabidopsis thaliana proteome: what proteins distinguish plants from other organisms?. Genome Biol 2004, 5(8):R53. 10.1186/gb-2004-5-8-r53, 507878, 15287975.
    • (2004) Genome Biol , vol.5 , Issue.8
    • Gutierrez, R.A.1    Green, P.J.2    Keegstra, K.3    Ohlrogge, J.B.4
  • 11
    • 0037382642 scopus 로고    scopus 로고
    • Evolution of transcription factor function
    • 10.1016/S0959-437X(03)00017-0, 12672498
    • Hsia CC, McGinnis W. Evolution of transcription factor function. Curr Opin Genet Dev 2003, 13(2):199-206. 10.1016/S0959-437X(03)00017-0, 12672498.
    • (2003) Curr Opin Genet Dev , vol.13 , Issue.2 , pp. 199-206
    • Hsia, C.C.1    McGinnis, W.2
  • 12
    • 0037819447 scopus 로고    scopus 로고
    • Transcription regulation and animal diversity
    • 10.1038/nature01763, 12853946
    • Levine M, Tjian R. Transcription regulation and animal diversity. Nature 2003, 424(6945):147-151. 10.1038/nature01763, 12853946.
    • (2003) Nature , vol.424 , Issue.6945 , pp. 147-151
    • Levine, M.1    Tjian, R.2
  • 13
    • 70350655966 scopus 로고    scopus 로고
    • Legume transcription factor genes: what makes legumes so special?
    • 10.1104/pp.109.144105, 2773095, 19726573
    • Libault M, Joshi T, Benedito VA, Xu D, Udvardi MK, Stacey G. Legume transcription factor genes: what makes legumes so special?. Plant Physiol 2009, 151(3):991-1001. 10.1104/pp.109.144105, 2773095, 19726573.
    • (2009) Plant Physiol , vol.151 , Issue.3 , pp. 991-1001
    • Libault, M.1    Joshi, T.2    Benedito, V.A.3    Xu, D.4    Udvardi, M.K.5    Stacey, G.6
  • 14
    • 0346003778 scopus 로고    scopus 로고
    • Recently duplicated maize R2R3 Myb genes provide evidence for distinct mechanisms of evolutionary divergence after duplication
    • 10.1104/pp.012047, 166837, 12586885
    • Dias AP, Braun EL, McMullen MD, Grotewold E. Recently duplicated maize R2R3 Myb genes provide evidence for distinct mechanisms of evolutionary divergence after duplication. Plant Physiol 2003, 131(2):610-620. 10.1104/pp.012047, 166837, 12586885.
    • (2003) Plant Physiol , vol.131 , Issue.2 , pp. 610-620
    • Dias, A.P.1    Braun, E.L.2    McMullen, M.D.3    Grotewold, E.4
  • 15
    • 0036066765 scopus 로고    scopus 로고
    • The role of lineage-specific gene family expansion in the evolution of eukaryotes
    • 10.1101/gr.174302, 186617, 12097341
    • Lespinet O, Wolf YI, Koonin EV, Aravind L. The role of lineage-specific gene family expansion in the evolution of eukaryotes. Genome Res 2002, 12(7):1048-1059. 10.1101/gr.174302, 186617, 12097341.
    • (2002) Genome Res , vol.12 , Issue.7 , pp. 1048-1059
    • Lespinet, O.1    Wolf, Y.I.2    Koonin, E.V.3    Aravind, L.4
  • 16
    • 0034671865 scopus 로고    scopus 로고
    • Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes
    • 10.1126/science.290.5499.2105, 11118137
    • Riechmann JL, Heard J, Martin G, Reuber L, Jiang C, Keddie J, Adam L, Pineda O, Ratcliffe OJ, Samaha RR, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 2000, 290(5499):2105-2110. 10.1126/science.290.5499.2105, 11118137.
    • (2000) Science , vol.290 , Issue.5499 , pp. 2105-2110
    • Riechmann, J.L.1    Heard, J.2    Martin, G.3    Reuber, L.4    Jiang, C.5    Keddie, J.6    Adam, L.7    Pineda, O.8    Ratcliffe, O.J.9    Samaha, R.R.10
  • 17
    • 70349682921 scopus 로고    scopus 로고
    • Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes
    • 10.1007/s10577-009-9055-9, 19802709
    • Edger PP, Pires JC. Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes. Chromosome Res 2009, 17(5):699-717. 10.1007/s10577-009-9055-9, 19802709.
    • (2009) Chromosome Res , vol.17 , Issue.5 , pp. 699-717
    • Edger, P.P.1    Pires, J.C.2
  • 18
    • 33745610025 scopus 로고    scopus 로고
    • Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity
    • 10.1101/gr.3681406, 16818725
    • Freeling M, Thomas BC. Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity. Genome Res 2006, 16(7):805-814. 10.1101/gr.3681406, 16818725.
    • (2006) Genome Res , vol.16 , Issue.7 , pp. 805-814
    • Freeling, M.1    Thomas, B.C.2
  • 19
    • 0033805512 scopus 로고    scopus 로고
    • MADS-Box gene diversity in seed plants 300 million years ago
    • 10.1093/oxfordjournals.molbev.a026243, 11018150
    • Becker A, Winter KU, Meyer B, Saedler H, Theissen G. MADS-Box gene diversity in seed plants 300 million years ago. Mol Biol Evol 2000, 17(10):1425-1434. 10.1093/oxfordjournals.molbev.a026243, 11018150.
    • (2000) Mol Biol Evol , vol.17 , Issue.10 , pp. 1425-1434
    • Becker, A.1    Winter, K.U.2    Meyer, B.3    Saedler, H.4    Theissen, G.5
  • 20
    • 33846283385 scopus 로고    scopus 로고
    • The evolution of gene regulation by transcription factors and microRNAs
    • Chen K, Rajewsky N. The evolution of gene regulation by transcription factors and microRNAs. Nat Rev Genet 2007, 8(2):93-103.
    • (2007) Nat Rev Genet , vol.8 , Issue.2 , pp. 93-103
    • Chen, K.1    Rajewsky, N.2
  • 21
    • 33845634412 scopus 로고    scopus 로고
    • Cell cycle regulation in plant development
    • 10.1146/annurev.genet.40.110405.090431, 17094738
    • Inze D, De Veylder L. Cell cycle regulation in plant development. Annu Rev Genet 2006, 40:77-105. 10.1146/annurev.genet.40.110405.090431, 17094738.
    • (2006) Annu Rev Genet , vol.40 , pp. 77-105
    • Inze, D.1    De Veylder, L.2
  • 22
    • 0032514486 scopus 로고    scopus 로고
    • The gain of three mitochondrial introns identifies liverworts as the earliest land plants
    • 10.1038/29286, 9716129
    • Qiu YL, Cho Y, Cox JC, Palmer JD. The gain of three mitochondrial introns identifies liverworts as the earliest land plants. Nature 1998, 394(6694):671-674. 10.1038/29286, 9716129.
    • (1998) Nature , vol.394 , Issue.6694 , pp. 671-674
    • Qiu, Y.L.1    Cho, Y.2    Cox, J.C.3    Palmer, J.D.4
  • 23
    • 0032969238 scopus 로고    scopus 로고
    • Plant mitochondrial RNA editing
    • 10.1007/PL00006473, 10093219
    • Steinhauser S, Beckert S, Capesius I, Malek O, Knoop V. Plant mitochondrial RNA editing. J Mol Evol 1999, 48(3):303-312. 10.1007/PL00006473, 10093219.
    • (1999) J Mol Evol , vol.48 , Issue.3 , pp. 303-312
    • Steinhauser, S.1    Beckert, S.2    Capesius, I.3    Malek, O.4    Knoop, V.5
  • 24
    • 0037008837 scopus 로고    scopus 로고
    • Divergent intron conservation in the mitochondrial nad2 gene: signatures for the three bryophyte classes (mosses, liverworts, and hornworts) and the lycophytes
    • 10.1007/s00239-002-2324-2, 12187380
    • Pruchner D, Beckert S, Muhle H, Knoop V. Divergent intron conservation in the mitochondrial nad2 gene: signatures for the three bryophyte classes (mosses, liverworts, and hornworts) and the lycophytes. J Mol Evol 2002, 55(3):265-271. 10.1007/s00239-002-2324-2, 12187380.
    • (2002) J Mol Evol , vol.55 , Issue.3 , pp. 265-271
    • Pruchner, D.1    Beckert, S.2    Muhle, H.3    Knoop, V.4
  • 25
    • 10344257212 scopus 로고    scopus 로고
    • Ancestors of trans-splicing mitochondrial introns support serial sister group relationships of hornworts and mosses with vascular plants
    • Groth-Malonek M, Pruchner D, Grewe F, Knoop V. Ancestors of trans-splicing mitochondrial introns support serial sister group relationships of hornworts and mosses with vascular plants. Mol Biol Evol 2005, 22(1):117-125.
    • (2005) Mol Biol Evol , vol.22 , Issue.1 , pp. 117-125
    • Groth-Malonek, M.1    Pruchner, D.2    Grewe, F.3    Knoop, V.4
  • 26
    • 33748157972 scopus 로고    scopus 로고
    • Unraveling the evolutionary history of the liverworts (marchantiophyta): multiple taxa, genomes and analyses
    • Forrest LL, Davis EC, Long DG, Crandall-Stotler BJ, Clark A, Hollingsworth ML. Unraveling the evolutionary history of the liverworts (marchantiophyta): multiple taxa, genomes and analyses. Bryologist 2006, 109(3):303-334.
    • (2006) Bryologist , vol.109 , Issue.3 , pp. 303-334
    • Forrest, L.L.1    Davis, E.C.2    Long, D.G.3    Crandall-Stotler, B.J.4    Clark, A.5    Hollingsworth, M.L.6
  • 27
    • 33644953310 scopus 로고    scopus 로고
    • Illuminating the evolutionary history of liverworts (marchantiophyta) - towards a natural classification
    • He-Nygren X, Juslen A, Ahonen I, Glenny D, Piippo S. Illuminating the evolutionary history of liverworts (marchantiophyta) - towards a natural classification. Cladistics 2006, 22(1):1-31.
    • (2006) Cladistics , vol.22 , Issue.1 , pp. 1-31
    • He-Nygren, X.1    Juslen, A.2    Ahonen, I.3    Glenny, D.4    Piippo, S.5
  • 28
    • 0141828151 scopus 로고    scopus 로고
    • Fragments of the earliest land plants
    • 10.1038/nature01884, 13679913
    • Wellman CH, Osterloff PL, Mohiuddin U. Fragments of the earliest land plants. Nature 2003, 425(6955):282-285. 10.1038/nature01884, 13679913.
    • (2003) Nature , vol.425 , Issue.6955 , pp. 282-285
    • Wellman, C.H.1    Osterloff, P.L.2    Mohiuddin, U.3
  • 29
    • 34147164708 scopus 로고    scopus 로고
    • Green genes-comparative genomics of the green branch of life
    • 10.1016/j.cell.2007.04.004, 17448980
    • Bowman JL, Floyd SK, Sakakibara K. Green genes-comparative genomics of the green branch of life. Cell 2007, 129(2):229-234. 10.1016/j.cell.2007.04.004, 17448980.
    • (2007) Cell , vol.129 , Issue.2 , pp. 229-234
    • Bowman, J.L.1    Floyd, S.K.2    Sakakibara, K.3
  • 30
    • 0034733167 scopus 로고    scopus 로고
    • Comparison of expressed sequence tags from male and female sexual organs of marchantia polymorpha
    • 10.1093/dnares/7.3.165, 10907846
    • Nishiyama R, Yamato KT, Miura K, Sakaida M, Okada S, Kono K, Takahama M, Sone T, Takenaka M, Fukuzawa H, et al. Comparison of expressed sequence tags from male and female sexual organs of marchantia polymorpha. DNA Res 2000, 7(3):165-174. 10.1093/dnares/7.3.165, 10907846.
    • (2000) DNA Res , vol.7 , Issue.3 , pp. 165-174
    • Nishiyama, R.1    Yamato, K.T.2    Miura, K.3    Sakaida, M.4    Okada, S.5    Kono, K.6    Takahama, M.7    Sone, T.8    Takenaka, M.9    Fukuzawa, H.10
  • 31
    • 0033604914 scopus 로고    scopus 로고
    • Expressed sequence tags from immature female sexual organ of a liverwort, marchantia polymorpha
    • 10.1093/dnares/6.1.1, 10231024
    • Nagai J, Yamato KT, Sakaida M, Yoda H, Fukuzawa H, Ohyama K. Expressed sequence tags from immature female sexual organ of a liverwort, marchantia polymorpha. DNA Res 1999, 6(1):1-11. 10.1093/dnares/6.1.1, 10231024.
    • (1999) DNA Res , vol.6 , Issue.1 , pp. 1-11
    • Nagai, J.1    Yamato, K.T.2    Sakaida, M.3    Yoda, H.4    Fukuzawa, H.5    Ohyama, K.6
  • 32
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de bruijn graphs
    • 10.1101/gr.074492.107, 2336801, 18349386
    • Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly using de bruijn graphs. Genome Res 2008, 18(5):821-829. 10.1101/gr.074492.107, 2336801, 18349386.
    • (2008) Genome Res , vol.18 , Issue.5 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 33
    • 84859768479 scopus 로고    scopus 로고
    • Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels
    • 10.1093/bioinformatics/bts094, 3324515, 22368243
    • Schulz MH, Zerbino DR, Vingron M, Birney E. Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels. Bioinformatics 2012, 28(8):1086-1092. 10.1093/bioinformatics/bts094, 3324515, 22368243.
    • (2012) Bioinformatics , vol.28 , Issue.8 , pp. 1086-1092
    • Schulz, M.H.1    Zerbino, D.R.2    Vingron, M.3    Birney, E.4
  • 34
    • 79951828683 scopus 로고    scopus 로고
    • De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification
    • 10.1093/dnares/dsq028, 3041503, 21217129
    • Garg R, Patel RK, Tyagi AK, Jain M. De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification. DNA Res 2011, 18(1):53-63. 10.1093/dnares/dsq028, 3041503, 21217129.
    • (2011) DNA Res , vol.18 , Issue.1 , pp. 53-63
    • Garg, R.1    Patel, R.K.2    Tyagi, A.K.3    Jain, M.4
  • 36
    • 79952112114 scopus 로고    scopus 로고
    • Computational identification of plant transcription factors and the construction of the PlantTFDB database
    • 10.1007/978-1-60761-854-6_21, 20827602
    • He K, Guo AY, Gao G, Zhu QH, Liu XC, Zhang H, Chen X, Gu X, Luo J. Computational identification of plant transcription factors and the construction of the PlantTFDB database. Methods Mol Biol 2010, 674:351-368. 10.1007/978-1-60761-854-6_21, 20827602.
    • (2010) Methods Mol Biol , vol.674 , pp. 351-368
    • He, K.1    Guo, A.Y.2    Gao, G.3    Zhu, Q.H.4    Liu, X.C.5    Zhang, H.6    Chen, X.7    Gu, X.8    Luo, J.9
  • 37
    • 78651337578 scopus 로고    scopus 로고
    • PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database
    • Database issue, 3013715, 21097470, Database issue
    • Zhang H, Jin J, Tang L, Zhao Y, Gu X, Gao G, Luo J, Database issue PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database. Nucleic Acids Res 2011, 39(Database issue):D1114-1117. 3013715, 21097470, Database issue.
    • (2011) Nucleic Acids Res , vol.39
    • Zhang, H.1    Jin, J.2    Tang, L.3    Zhao, Y.4    Gu, X.5    Gao, G.6    Luo, J.7
  • 41
    • 84855696745 scopus 로고    scopus 로고
    • Morphological evolution in land plants: new designs with old genes
    • 10.1098/rstb.2011.0252, 3248709, 22232763
    • Pires ND, Dolan L. Morphological evolution in land plants: new designs with old genes. Philos Trans R Soc Lond B Biol Sci 2012, 367(1588):508-518. 10.1098/rstb.2011.0252, 3248709, 22232763.
    • (2012) Philos Trans R Soc Lond B Biol Sci , vol.367 , Issue.1588 , pp. 508-518
    • Pires, N.D.1    Dolan, L.2
  • 42
    • 21044452598 scopus 로고    scopus 로고
    • Cyanidioschyzon merolae genome. A tool for facilitating comparable studies on organelle biogenesis in photosynthetic eukaryotes
    • 10.1104/pp.104.053991, 1065357, 15681662
    • Misumi O, Matsuzaki M, Nozaki H, Miyagishima SY, Mori T, Nishida K, Yagisawa F, Yoshida Y, Kuroiwa H, Kuroiwa T. Cyanidioschyzon merolae genome. A tool for facilitating comparable studies on organelle biogenesis in photosynthetic eukaryotes. Plant Physiol 2005, 137(2):567-585. 10.1104/pp.104.053991, 1065357, 15681662.
    • (2005) Plant Physiol , vol.137 , Issue.2 , pp. 567-585
    • Misumi, O.1    Matsuzaki, M.2    Nozaki, H.3    Miyagishima, S.Y.4    Mori, T.5    Nishida, K.6    Yagisawa, F.7    Yoshida, Y.8    Kuroiwa, H.9    Kuroiwa, T.10
  • 43
    • 19944432176 scopus 로고    scopus 로고
    • EST-analysis of the thermo-acidophilic red microalga galdieria sulphuraria reveals potential for lipid a biosynthesis and unveils the pathway of carbon export from rhodoplasts
    • 10.1007/s11103-004-0376-y, 15604662
    • Weber AP, Oesterhelt C, Gross W, Brautigam A, Imboden LA, Krassovskaya I, Linka N, Truchina J, Schneidereit J, Voll H, et al. EST-analysis of the thermo-acidophilic red microalga galdieria sulphuraria reveals potential for lipid a biosynthesis and unveils the pathway of carbon export from rhodoplasts. Plant Mol Biol 2004, 55(1):17-32. 10.1007/s11103-004-0376-y, 15604662.
    • (2004) Plant Mol Biol , vol.55 , Issue.1 , pp. 17-32
    • Weber, A.P.1    Oesterhelt, C.2    Gross, W.3    Brautigam, A.4    Imboden, L.A.5    Krassovskaya, I.6    Linka, N.7    Truchina, J.8    Schneidereit, J.9    Voll, H.10
  • 44
    • 28944432140 scopus 로고    scopus 로고
    • Global dispersal and ancient cryptic species in the smallest marine eukaryotes
    • Slapeta J, Lopez-Garcia P, Moreira D. Global dispersal and ancient cryptic species in the smallest marine eukaryotes. Mol Biol Evol 2006, 23(1):23-29.
    • (2006) Mol Biol Evol , vol.23 , Issue.1 , pp. 23-29
    • Slapeta, J.1    Lopez-Garcia, P.2    Moreira, D.3
  • 45
    • 64849088316 scopus 로고    scopus 로고
    • Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes micromonas
    • 10.1126/science.1167222, 19359590
    • Worden AZ, Lee JH, Mock T, Rouze P, Simmons MP, Aerts AL, Allen AE, Cuvelier ML, Derelle E, Everett MV, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes micromonas. Science 2009, 324(5924):268-272. 10.1126/science.1167222, 19359590.
    • (2009) Science , vol.324 , Issue.5924 , pp. 268-272
    • Worden, A.Z.1    Lee, J.H.2    Mock, T.3    Rouze, P.4    Simmons, M.P.5    Aerts, A.L.6    Allen, A.E.7    Cuvelier, M.L.8    Derelle, E.9    Everett, M.V.10
  • 48
    • 78049477633 scopus 로고    scopus 로고
    • The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex
    • 10.1105/tpc.110.076406, 2965543, 20852019
    • Blanc G, Duncan G, Agarkova I, Borodovsky M, Gurnon J, Kuo A, Lindquist E, Lucas S, Pangilinan J, Polle J, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell 2010, 22(9):2943-2955. 10.1105/tpc.110.076406, 2965543, 20852019.
    • (2010) Plant Cell , vol.22 , Issue.9 , pp. 2943-2955
    • Blanc, G.1    Duncan, G.2    Agarkova, I.3    Borodovsky, M.4    Gurnon, J.5    Kuo, A.6    Lindquist, E.7    Lucas, S.8    Pangilinan, J.9    Polle, J.10
  • 49
    • 84861408399 scopus 로고    scopus 로고
    • The genome of the polar eukaryotic microalga coccomyxa subellipsoidea reveals traits of cold adaptation
    • 10.1186/gb-2012-13-5-r39, 3446292, 22630137
    • Blanc G, Agarkova I, Grimwood J, Kuo A, Brueggeman A, Dunigan DD, Gurnon J, Ladunga I, Lindquist E, Lucas S, et al. The genome of the polar eukaryotic microalga coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol 2012, 13(5):R39. 10.1186/gb-2012-13-5-r39, 3446292, 22630137.
    • (2012) Genome Biol , vol.13 , Issue.5
    • Blanc, G.1    Agarkova, I.2    Grimwood, J.3    Kuo, A.4    Brueggeman, A.5    Dunigan, D.D.6    Gurnon, J.7    Ladunga, I.8    Lindquist, E.9    Lucas, S.10
  • 50
    • 79956309501 scopus 로고    scopus 로고
    • The Selaginella genome identifies genetic changes associated with the evolution of vascular plants
    • 10.1126/science.1203810, 3166216, 21551031
    • Banks JA, Nishiyama T, Hasebe M, Bowman JL, Gribskov M, dePamphilis C, Albert VA, Aono N, Aoyama T, Ambrose BA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science 2011, 332(6032):960-963. 10.1126/science.1203810, 3166216, 21551031.
    • (2011) Science , vol.332 , Issue.6032 , pp. 960-963
    • Banks, J.A.1    Nishiyama, T.2    Hasebe, M.3    Bowman, J.L.4    Gribskov, M.5    dePamphilis, C.6    Albert, V.A.7    Aono, N.8    Aoyama, T.9    Ambrose, B.A.10
  • 51
    • 0037023384 scopus 로고    scopus 로고
    • A draft sequence of the rice genome (oryza sativa L. ssp. Indica)
    • 10.1126/science.1068037, 11935017
    • Yu J, Hu S, Wang J, Wong GK, Li S, Liu B, Deng Y, Dai L, Zhou Y, Zhang X, et al. A draft sequence of the rice genome (oryza sativa L. ssp. Indica). Science 2002, 296(5565):79-92. 10.1126/science.1068037, 11935017.
    • (2002) Science , vol.296 , Issue.5565 , pp. 79-92
    • Yu, J.1    Hu, S.2    Wang, J.3    Wong, G.K.4    Li, S.5    Liu, B.6    Deng, Y.7    Dai, L.8    Zhou, Y.9    Zhang, X.10
  • 54
    • 0037077285 scopus 로고    scopus 로고
    • A novel family of calmodulin-binding transcription activators in multicellular organisms
    • 10.1074/jbc.M200268200, 11925432
    • Bouche N, Scharlat A, Snedden W, Bouchez D, Fromm H. A novel family of calmodulin-binding transcription activators in multicellular organisms. J Biol Chem 2002, 277(24):21851-21861. 10.1074/jbc.M200268200, 11925432.
    • (2002) J Biol Chem , vol.277 , Issue.24 , pp. 21851-21861
    • Bouche, N.1    Scharlat, A.2    Snedden, W.3    Bouchez, D.4    Fromm, H.5
  • 55
    • 0034110242 scopus 로고    scopus 로고
    • Alfin1 transcription factor overexpression enhances plant root growth under normal and saline conditions and improves salt tolerance in alfalfa
    • 10.1007/PL00008150, 10750899
    • Winicov I. Alfin1 transcription factor overexpression enhances plant root growth under normal and saline conditions and improves salt tolerance in alfalfa. Planta 2000, 210(3):416-422. 10.1007/PL00008150, 10750899.
    • (2000) Planta , vol.210 , Issue.3 , pp. 416-422
    • Winicov, I.1
  • 56
    • 0031854031 scopus 로고    scopus 로고
    • The ARF family of transcription factors and their role in plant hormone-responsive transcription
    • 10.1007/s000180050190, 9711229
    • Guilfoyle TJ, Ulmasov T, Hagen G. The ARF family of transcription factors and their role in plant hormone-responsive transcription. Cell Mol Life Sci 1998, 54(7):619-627. 10.1007/s000180050190, 9711229.
    • (1998) Cell Mol Life Sci , vol.54 , Issue.7 , pp. 619-627
    • Guilfoyle, T.J.1    Ulmasov, T.2    Hagen, G.3
  • 57
    • 0035999460 scopus 로고    scopus 로고
    • Genetics of Aux/IAA and ARF action in plant growth and development
    • Liscum E, Reed JW. Genetics of Aux/IAA and ARF action in plant growth and development. Plant Mol Biol 2002, 49(3-4):387-400.
    • (2002) Plant Mol Biol , vol.49 , Issue.3-4 , pp. 387-400
    • Liscum, E.1    Reed, J.W.2
  • 58
    • 0032417391 scopus 로고    scopus 로고
    • Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1
    • 10.1101/gad.12.23.3703, 317251, 9851977
    • Solano R, Stepanova A, Chao Q, Ecker JR. Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1. Genes Dev 1998, 12(23):3703-3714. 10.1101/gad.12.23.3703, 317251, 9851977.
    • (1998) Genes Dev , vol.12 , Issue.23 , pp. 3703-3714
    • Solano, R.1    Stepanova, A.2    Chao, Q.3    Ecker, J.R.4
  • 59
    • 0141872963 scopus 로고    scopus 로고
    • The AtGRF family of putative transcription factors is involved in leaf and cotyledon growth in Arabidopsis
    • 10.1046/j.1365-313X.2003.01862.x, 12974814
    • Kim JH, Choi D, Kende H. The AtGRF family of putative transcription factors is involved in leaf and cotyledon growth in Arabidopsis. Plant J 2003, 36(1):94-104. 10.1046/j.1365-313X.2003.01862.x, 12974814.
    • (2003) Plant J , vol.36 , Issue.1 , pp. 94-104
    • Kim, J.H.1    Choi, D.2    Kende, H.3
  • 60
    • 0032497534 scopus 로고    scopus 로고
    • A genetic framework for floral patterning
    • 10.1038/26903, 9783581
    • Parcy F, Nilsson O, Busch MA, Lee I, Weigel D. A genetic framework for floral patterning. Nature 1998, 395(6702):561-566. 10.1038/26903, 9783581.
    • (1998) Nature , vol.395 , Issue.6702 , pp. 561-566
    • Parcy, F.1    Nilsson, O.2    Busch, M.A.3    Lee, I.4    Weigel, D.5
  • 61
    • 36148992243 scopus 로고    scopus 로고
    • LATERAL ORGAN BOUNDARIES defines a new family of DNA-binding transcription factors and can interact with specific bHLH proteins
    • 10.1093/nar/gkm775, 2095788, 17913740
    • Husbands A, Bell EM, Shuai B, Smith HM, Springer PS. LATERAL ORGAN BOUNDARIES defines a new family of DNA-binding transcription factors and can interact with specific bHLH proteins. Nucleic Acids Res 2007, 35(19):6663-6671. 10.1093/nar/gkm775, 2095788, 17913740.
    • (2007) Nucleic Acids Res , vol.35 , Issue.19 , pp. 6663-6671
    • Husbands, A.1    Bell, E.M.2    Shuai, B.3    Smith, H.M.4    Springer, P.S.5
  • 62
    • 0033731176 scopus 로고    scopus 로고
    • LEUNIG, a putative transcriptional corepressor that regulates AGAMOUS expression during flower development
    • 10.1073/pnas.230352397, 18862, 11058164
    • Conner J, Liu Z. LEUNIG, a putative transcriptional corepressor that regulates AGAMOUS expression during flower development. Proc Natl Acad Sci U S A 2000, 97(23):12902-12907. 10.1073/pnas.230352397, 18862, 11058164.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , Issue.23 , pp. 12902-12907
    • Conner, J.1    Liu, Z.2
  • 63
    • 13744249762 scopus 로고    scopus 로고
    • NAC transcription factors: structurally distinct, functionally diverse
    • 10.1016/j.tplants.2004.12.010, 15708345
    • Olsen AN, Ernst HA, Leggio LL, Skriver K. NAC transcription factors: structurally distinct, functionally diverse. Trends Plant Sci 2005, 10(2):79-87. 10.1016/j.tplants.2004.12.010, 15708345.
    • (2005) Trends Plant Sci , vol.10 , Issue.2 , pp. 79-87
    • Olsen, A.N.1    Ernst, H.A.2    Leggio, L.L.3    Skriver, K.4
  • 64
    • 0033613176 scopus 로고    scopus 로고
    • Molecular analysis of NOZZLE, a gene involved in pattern formation and early sporogenesis during sex organ development in Arabidopsis thaliana
    • 10.1073/pnas.96.20.11664, 18091, 10500234
    • Schiefthaler U, Balasubramanian S, Sieber P, Chevalier D, Wisman E, Schneitz K. Molecular analysis of NOZZLE, a gene involved in pattern formation and early sporogenesis during sex organ development in Arabidopsis thaliana. Proc Natl Acad Sci U S A 1999, 96(20):11664-11669. 10.1073/pnas.96.20.11664, 18091, 10500234.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , Issue.20 , pp. 11664-11669
    • Schiefthaler, U.1    Balasubramanian, S.2    Sieber, P.3    Chevalier, D.4    Wisman, E.5    Schneitz, K.6
  • 65
    • 16344395913 scopus 로고    scopus 로고
    • A central role of Arabidopsis thaliana ovate family proteins in networking and subcellular localization of 3-aa loop extension homeodomain proteins
    • 10.1073/pnas.0501181102, 555730, 15781858
    • Hackbusch J, Richter K, Muller J, Salamini F, Uhrig JF. A central role of Arabidopsis thaliana ovate family proteins in networking and subcellular localization of 3-aa loop extension homeodomain proteins. Proc Natl Acad Sci U S A 2005, 102(13):4908-4912. 10.1073/pnas.0501181102, 555730, 15781858.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , Issue.13 , pp. 4908-4912
    • Hackbusch, J.1    Richter, K.2    Muller, J.3    Salamini, F.4    Uhrig, J.F.5
  • 66
    • 0034219089 scopus 로고    scopus 로고
    • Characterization of a novel gene encoding a putative single zinc-finger protein, ZIM, expressed during the reproductive phase in arabidopsis thaliana
    • 10.1271/bbb.64.1402, 10945256
    • Nishii A, Takemura M, Fujita H, Shikata M, Yokota A, Kohchi T. Characterization of a novel gene encoding a putative single zinc-finger protein, ZIM, expressed during the reproductive phase in arabidopsis thaliana. Biosci Biotechnol Biochem 2000, 64(7):1402-1409. 10.1271/bbb.64.1402, 10945256.
    • (2000) Biosci Biotechnol Biochem , vol.64 , Issue.7 , pp. 1402-1409
    • Nishii, A.1    Takemura, M.2    Fujita, H.3    Shikata, M.4    Yokota, A.5    Kohchi, T.6
  • 67
    • 70249117146 scopus 로고    scopus 로고
    • Soybean trihelix transcription factors GmGT-2A and GmGT-2B improve plant tolerance to abiotic stresses in transgenic arabidopsis
    • 10.1371/journal.pone.0006898, 2731930, 19730734
    • Xie ZM, Zou HF, Lei G, Wei W, Zhou QY, Niu CF, Liao Y, Tian AG, Ma B, Zhang WK, et al. Soybean trihelix transcription factors GmGT-2A and GmGT-2B improve plant tolerance to abiotic stresses in transgenic arabidopsis. PLoS One 2009, 4(9):e6898. 10.1371/journal.pone.0006898, 2731930, 19730734.
    • (2009) PLoS One , vol.4 , Issue.9
    • Xie, Z.M.1    Zou, H.F.2    Lei, G.3    Wei, W.4    Zhou, Q.Y.5    Niu, C.F.6    Liao, Y.7    Tian, A.G.8    Ma, B.9    Zhang, W.K.10
  • 68
    • 70349675850 scopus 로고    scopus 로고
    • The trihelix transcription factor GTL1 regulates ploidy-dependent cell growth in the Arabidopsis trichome
    • 10.1105/tpc.109.068387, 2751941, 19717615
    • Breuer C, Kawamura A, Ichikawa T, Tominaga-Wada R, Wada T, Kondou Y, Muto S, Matsui M, Sugimoto K. The trihelix transcription factor GTL1 regulates ploidy-dependent cell growth in the Arabidopsis trichome. Plant Cell 2009, 21(8):2307-2322. 10.1105/tpc.109.068387, 2751941, 19717615.
    • (2009) Plant Cell , vol.21 , Issue.8 , pp. 2307-2322
    • Breuer, C.1    Kawamura, A.2    Ichikawa, T.3    Tominaga-Wada, R.4    Wada, T.5    Kondou, Y.6    Muto, S.7    Matsui, M.8    Sugimoto, K.9
  • 69
    • 62549153134 scopus 로고    scopus 로고
    • Repression of seed maturation genes by a trihelix transcriptional repressor in arabidopsis seedlings
    • 10.1105/tpc.108.061309, 2648069, 19155348
    • Gao MJ, Lydiate DJ, Li X, Lui H, Gjetvaj B, Hegedus DD, Rozwadowski K. Repression of seed maturation genes by a trihelix transcriptional repressor in arabidopsis seedlings. Plant Cell 2009, 21(1):54-71. 10.1105/tpc.108.061309, 2648069, 19155348.
    • (2009) Plant Cell , vol.21 , Issue.1 , pp. 54-71
    • Gao, M.J.1    Lydiate, D.J.2    Li, X.3    Lui, H.4    Gjetvaj, B.5    Hegedus, D.D.6    Rozwadowski, K.7
  • 70
    • 4544366085 scopus 로고    scopus 로고
    • PETAL LOSS, a trihelix transcription factor gene, regulates perianth architecture in the arabidopsis flower
    • 10.1242/dev.01279, 15269176
    • Brewer PB, Howles PA, Dorian K, Griffith ME, Ishida T, Kaplan-Levy RN, Kilinc A, Smyth DR. PETAL LOSS, a trihelix transcription factor gene, regulates perianth architecture in the arabidopsis flower. Development 2004, 131(16):4035-4045. 10.1242/dev.01279, 15269176.
    • (2004) Development , vol.131 , Issue.16 , pp. 4035-4045
    • Brewer, P.B.1    Howles, P.A.2    Dorian, K.3    Griffith, M.E.4    Ishida, T.5    Kaplan-Levy, R.N.6    Kilinc, A.7    Smyth, D.R.8
  • 71
    • 1642380225 scopus 로고    scopus 로고
    • The role of GRAS proteins in plant signal transduction and development
    • 10.1007/s00425-004-1203-z, 14760535
    • Bolle C. The role of GRAS proteins in plant signal transduction and development. Planta 2004, 218(5):683-692. 10.1007/s00425-004-1203-z, 14760535.
    • (2004) Planta , vol.218 , Issue.5 , pp. 683-692
    • Bolle, C.1
  • 72
    • 0032539856 scopus 로고    scopus 로고
    • The trihelix DNA-binding motif in higher plants is not restricted to the transcription factors GT-1 and GT-2
    • 10.1073/pnas.95.6.3318, 19739, 9501260
    • Smalle J, Kurepa J, Haegman M, Gielen J, Van Montagu M, Van Der Straeten D. The trihelix DNA-binding motif in higher plants is not restricted to the transcription factors GT-1 and GT-2. Proc Natl Acad Sci U S A 1998, 95(6):3318-3322. 10.1073/pnas.95.6.3318, 19739, 9501260.
    • (1998) Proc Natl Acad Sci U S A , vol.95 , Issue.6 , pp. 3318-3322
    • Smalle, J.1    Kurepa, J.2    Haegman, M.3    Gielen, J.4    Van Montagu, M.5    Van Der Straeten, D.6
  • 73
    • 84873703296 scopus 로고    scopus 로고
    • Walkabout on the long branches of plant evolution
    • 10.1016/j.pbi.2012.10.001, 23140608
    • Bowman JL. Walkabout on the long branches of plant evolution. Curr Opin Plant Biol 2013, 16(1):70-77. 10.1016/j.pbi.2012.10.001, 23140608.
    • (2013) Curr Opin Plant Biol , vol.16 , Issue.1 , pp. 70-77
    • Bowman, J.L.1
  • 74
    • 0030885968 scopus 로고    scopus 로고
    • The origin and early evolution of plants on land
    • Kenrick P, Crane PR. The origin and early evolution of plants on land. Nature 1997, 389(6646):33-39.
    • (1997) Nature , vol.389 , Issue.6646 , pp. 33-39
    • Kenrick, P.1    Crane, P.R.2
  • 75
    • 0001290687 scopus 로고    scopus 로고
    • Domains in plexins: links to integrins and transcription factors
    • 10.1016/S0968-0004(99)01416-4, 10390613
    • Bork P, Doerks T, Springer TA, Snel B. Domains in plexins: links to integrins and transcription factors. Trends Biochem Sci 1999, 24(7):261-263. 10.1016/S0968-0004(99)01416-4, 10390613.
    • (1999) Trends Biochem Sci , vol.24 , Issue.7 , pp. 261-263
    • Bork, P.1    Doerks, T.2    Springer, T.A.3    Snel, B.4
  • 76
    • 34547702594 scopus 로고    scopus 로고
    • The VARL gene family and the evolutionary origins of the master cell-type regulatory gene, regA, in volvox carteri
    • 10.1007/s00239-006-0225-5, 17646893
    • Duncan L, Nishii I, Harryman A, Buckley S, Howard A, Friedman NR, Miller SM. The VARL gene family and the evolutionary origins of the master cell-type regulatory gene, regA, in volvox carteri. J Mol Evol 2007, 65(1):1-11. 10.1007/s00239-006-0225-5, 17646893.
    • (2007) J Mol Evol , vol.65 , Issue.1 , pp. 1-11
    • Duncan, L.1    Nishii, I.2    Harryman, A.3    Buckley, S.4    Howard, A.5    Friedman, N.R.6    Miller, S.M.7
  • 77
    • 77952479671 scopus 로고    scopus 로고
    • Uncovering the evolutionary origin of plant molecular processes: comparison of coleochaete (coleochaetales) and spirogyra (zygnematales) transcriptomes
    • 10.1186/1471-2229-10-96, 2890016, 20500869
    • Timme RE, Delwiche CF. Uncovering the evolutionary origin of plant molecular processes: comparison of coleochaete (coleochaetales) and spirogyra (zygnematales) transcriptomes. BMC Plant Biol 2010, 10:96. 10.1186/1471-2229-10-96, 2890016, 20500869.
    • (2010) BMC Plant Biol , vol.10 , pp. 96
    • Timme, R.E.1    Delwiche, C.F.2
  • 78
    • 77951549497 scopus 로고    scopus 로고
    • MIKC* MADS-box proteins: conserved regulators of the gametophytic generation of land plants
    • 10.1093/molbev/msq005, 20080864
    • Zobell O, Faigl W, Saedler H, Munster T. MIKC* MADS-box proteins: conserved regulators of the gametophytic generation of land plants. Mol Biol Evol 2010, 27(5):1201-1211. 10.1093/molbev/msq005, 20080864.
    • (2010) Mol Biol Evol , vol.27 , Issue.5 , pp. 1201-1211
    • Zobell, O.1    Faigl, W.2    Saedler, H.3    Munster, T.4
  • 79
    • 20044396737 scopus 로고    scopus 로고
    • Characterization of MADS-box genes in charophycean green algae and its implication for the evolution of MADS-box genes
    • 10.1073/pnas.0409860102, 548990, 15699346
    • Tanabe Y, Hasebe M, Sekimoto H, Nishiyama T, Kitani M, Henschel K, Munster T, Theissen G, Nozaki H, Ito M. Characterization of MADS-box genes in charophycean green algae and its implication for the evolution of MADS-box genes. Proc Natl Acad Sci U S A 2005, 102(7):2436-2441. 10.1073/pnas.0409860102, 548990, 15699346.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , Issue.7 , pp. 2436-2441
    • Tanabe, Y.1    Hasebe, M.2    Sekimoto, H.3    Nishiyama, T.4    Kitani, M.5    Henschel, K.6    Munster, T.7    Theissen, G.8    Nozaki, H.9    Ito, M.10
  • 80
    • 43949141781 scopus 로고    scopus 로고
    • Early sexual origins of homeoprotein heterodimerization and evolution of the plant KNOX/BELL family
    • 10.1016/j.cell.2008.04.028, 18510927
    • Lee JH, Lin H, Joo S, Goodenough U. Early sexual origins of homeoprotein heterodimerization and evolution of the plant KNOX/BELL family. Cell 2008, 133(5):829-840. 10.1016/j.cell.2008.04.028, 18510927.
    • (2008) Cell , vol.133 , Issue.5 , pp. 829-840
    • Lee, J.H.1    Lin, H.2    Joo, S.3    Goodenough, U.4
  • 81
    • 33744471190 scopus 로고    scopus 로고
    • Evolution of class III homeodomain-leucine zipper genes in streptophytes
    • 10.1534/genetics.105.054239, 1461458, 16489224
    • Floyd SK, Zalewski CS, Bowman JL. Evolution of class III homeodomain-leucine zipper genes in streptophytes. Genetics 2006, 173(1):373-388. 10.1534/genetics.105.054239, 1461458, 16489224.
    • (2006) Genetics , vol.173 , Issue.1 , pp. 373-388
    • Floyd, S.K.1    Zalewski, C.S.2    Bowman, J.L.3
  • 82
    • 78751570979 scopus 로고    scopus 로고
    • RNA sequencing: advances, challenges and opportunities
    • 10.1038/nrg2934, 3031867, 21191423
    • Ozsolak F, Milos PM. RNA sequencing: advances, challenges and opportunities. Nat Rev Genet 2011, 12(2):87-98. 10.1038/nrg2934, 3031867, 21191423.
    • (2011) Nat Rev Genet , vol.12 , Issue.2 , pp. 87-98
    • Ozsolak, F.1    Milos, P.M.2
  • 83
    • 0034141287 scopus 로고    scopus 로고
    • The YABBY gene family and abaxial cell fate
    • 10.1016/S1369-5266(99)00035-7, 10679447
    • Bowman JL. The YABBY gene family and abaxial cell fate. Curr Opin Plant Biol 2000, 3(1):17-22. 10.1016/S1369-5266(99)00035-7, 10679447.
    • (2000) Curr Opin Plant Biol , vol.3 , Issue.1 , pp. 17-22
    • Bowman, J.L.1
  • 84
    • 0033561110 scopus 로고    scopus 로고
    • Arabidopsis STERILE APETALA, a multifunctional gene regulating inflorescence, flower, and ovule development
    • 10.1101/gad.13.8.1002, 316639, 10215627
    • Byzova MV, Franken J, Aarts MG, de Almeida-Engler J, Engler G, Mariani C, Van Lookeren Campagne MM, Angenent GC. Arabidopsis STERILE APETALA, a multifunctional gene regulating inflorescence, flower, and ovule development. Genes Dev 1999, 13(8):1002-1014. 10.1101/gad.13.8.1002, 316639, 10215627.
    • (1999) Genes Dev , vol.13 , Issue.8 , pp. 1002-1014
    • Byzova, M.V.1    Franken, J.2    Aarts, M.G.3    de Almeida-Engler, J.4    Engler, G.5    Mariani, C.6    Van Lookeren Campagne, M.M.7    Angenent, G.C.8
  • 85
    • 16844364531 scopus 로고    scopus 로고
    • ULTRAPETALA1 Encodes a SAND domain putative transcriptional regulator that controls shoot and floral meristem activity in arabidopsis
    • 10.1242/dev.01642, 15673576
    • Carles CC, Choffnes-Inada D, Reville K, Lertpiriyapong K, Fletcher JC. ULTRAPETALA1 Encodes a SAND domain putative transcriptional regulator that controls shoot and floral meristem activity in arabidopsis. Development 2005, 132(5):897-911. 10.1242/dev.01642, 15673576.
    • (2005) Development , vol.132 , Issue.5 , pp. 897-911
    • Carles, C.C.1    Choffnes-Inada, D.2    Reville, K.3    Lertpiriyapong, K.4    Fletcher, J.C.5
  • 86
    • 4344655452 scopus 로고    scopus 로고
    • VOZ; isolation and characterization of novel vascular plant transcription factors with a one-zinc finger from arabidopsis thaliana
    • 10.1093/pcp/pch101, 15295067
    • Mitsuda N, Hisabori T, Takeyasu K, Sato MH. VOZ; isolation and characterization of novel vascular plant transcription factors with a one-zinc finger from arabidopsis thaliana. Plant Cell Physiol 2004, 45(7):845-854. 10.1093/pcp/pch101, 15295067.
    • (2004) Plant Cell Physiol , vol.45 , Issue.7 , pp. 845-854
    • Mitsuda, N.1    Hisabori, T.2    Takeyasu, K.3    Sato, M.H.4
  • 87
    • 0035281749 scopus 로고    scopus 로고
    • DDT - a novel domain in different transcription and chromosome remodeling factors
    • 10.1016/S0968-0004(00)01769-2, 11246006
    • Doerks T, Copley R, Bork P. DDT - a novel domain in different transcription and chromosome remodeling factors. Trends Biochem Sci 2001, 26(3):145-146. 10.1016/S0968-0004(00)01769-2, 11246006.
    • (2001) Trends Biochem Sci , vol.26 , Issue.3 , pp. 145-146
    • Doerks, T.1    Copley, R.2    Bork, P.3
  • 88
    • 78650361870 scopus 로고    scopus 로고
    • Simultaneous activation of SHR and ATHB8 expression defines switch to preprocambial cell state in arabidopsis leaf development
    • 10.1002/dvdy.22516, 21128301
    • Gardiner J, Donner TJ, Scarpella E. Simultaneous activation of SHR and ATHB8 expression defines switch to preprocambial cell state in arabidopsis leaf development. Dev Dyn 2011, 240(1):261-270. 10.1002/dvdy.22516, 21128301.
    • (2011) Dev Dyn , vol.240 , Issue.1 , pp. 261-270
    • Gardiner, J.1    Donner, T.J.2    Scarpella, E.3
  • 89
    • 0029831579 scopus 로고    scopus 로고
    • One billion years of Myb
    • Lipsick JS. One billion years of Myb. Oncogene 1996, 13(2):223-235.
    • (1996) Oncogene , vol.13 , Issue.2 , pp. 223-235
    • Lipsick, J.S.1
  • 90
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • 10.1126/science.290.5494.1151, 11073452
    • Lynch M, Conery JS. The evolutionary fate and consequences of duplicate genes. Science 2000, 290(5494):1151-1155. 10.1126/science.290.5494.1151, 11073452.
    • (2000) Science , vol.290 , Issue.5494 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 91
    • 77954345059 scopus 로고    scopus 로고
    • Genome-wide classification and evolutionary analysis of the bHLH family of transcription factors in arabidopsis, poplar, rice, moss, and algae
    • 10.1104/pp.110.153593, 2899937, 20472752
    • Carretero-Paulet L, Galstyan A, Roig-Villanova I, Martinez-Garcia JF, Bilbao-Castro JR, Robertson DL. Genome-wide classification and evolutionary analysis of the bHLH family of transcription factors in arabidopsis, poplar, rice, moss, and algae. Plant Physiol 2010, 153(3):1398-1412. 10.1104/pp.110.153593, 2899937, 20472752.
    • (2010) Plant Physiol , vol.153 , Issue.3 , pp. 1398-1412
    • Carretero-Paulet, L.1    Galstyan, A.2    Roig-Villanova, I.3    Martinez-Garcia, J.F.4    Bilbao-Castro, J.R.5    Robertson, D.L.6
  • 92
    • 77952222149 scopus 로고    scopus 로고
    • Origin and diversification of basic-helix-loop-helix proteins in plants
    • 10.1093/molbev/msp288, 2839125, 19942615
    • Pires N, Dolan L. Origin and diversification of basic-helix-loop-helix proteins in plants. Mol Biol Evol 2010, 27(4):862-874. 10.1093/molbev/msp288, 2839125, 19942615.
    • (2010) Mol Biol Evol , vol.27 , Issue.4 , pp. 862-874
    • Pires, N.1    Dolan, L.2
  • 93
    • 0033998082 scopus 로고    scopus 로고
    • C-MYB oncogene-like genes encoding three MYB repeats occur in all major plant lineages
    • 10.1046/j.1365-313x.2000.00666.x, 10743663
    • Kranz H, Scholz K, Weisshaar B. c-MYB oncogene-like genes encoding three MYB repeats occur in all major plant lineages. Plant J 2000, 21(2):231-235. 10.1046/j.1365-313x.2000.00666.x, 10743663.
    • (2000) Plant J , vol.21 , Issue.2 , pp. 231-235
    • Kranz, H.1    Scholz, K.2    Weisshaar, B.3
  • 94
    • 0032877611 scopus 로고    scopus 로고
    • Maize R2R3 Myb genes: sequence analysis reveals amplification in the higher plants
    • 1460732, 10471724
    • Rabinowicz PD, Braun EL, Wolfe AD, Bowen B, Grotewold E. Maize R2R3 Myb genes: sequence analysis reveals amplification in the higher plants. Genetics 1999, 153(1):427-444. 1460732, 10471724.
    • (1999) Genetics , vol.153 , Issue.1 , pp. 427-444
    • Rabinowicz, P.D.1    Braun, E.L.2    Wolfe, A.D.3    Bowen, B.4    Grotewold, E.5
  • 95
    • 2142692878 scopus 로고    scopus 로고
    • Transcription factors and their genes in higher plants functional domains, evolution and regulation
    • 10.1046/j.1432-1327.1999.00349.x, 10336605
    • Liu L, White MJ, MacRae TH. Transcription factors and their genes in higher plants functional domains, evolution and regulation. Eur J Biochem 1999, 262(2):247-257. 10.1046/j.1432-1327.1999.00349.x, 10336605.
    • (1999) Eur J Biochem , vol.262 , Issue.2 , pp. 247-257
    • Liu, L.1    White, M.J.2    MacRae, T.H.3
  • 96
    • 36448967092 scopus 로고    scopus 로고
    • Transposase-derived transcription factors regulate light signaling in Arabidopsis
    • 10.1126/science.1146281, 2151751, 18033885
    • Lin R, Ding L, Casola C, Ripoll DR, Feschotte C, Wang H. Transposase-derived transcription factors regulate light signaling in Arabidopsis. Science 2007, 318(5854):1302-1305. 10.1126/science.1146281, 2151751, 18033885.
    • (2007) Science , vol.318 , Issue.5854 , pp. 1302-1305
    • Lin, R.1    Ding, L.2    Casola, C.3    Ripoll, D.R.4    Feschotte, C.5    Wang, H.6
  • 97
    • 34250527353 scopus 로고
    • Red (R), far-red (FR) photoreversible control of growth and chlorophyll content in light-grown thalli of marchantia polymorpha L
    • Fredericq H, De Greef J. Red (R), far-red (FR) photoreversible control of growth and chlorophyll content in light-grown thalli of marchantia polymorpha L. Naturwissenschaften 1966, 53(13):337.
    • (1966) Naturwissenschaften , vol.53 , Issue.13 , pp. 337
    • Fredericq, H.1    De Greef, J.2
  • 98
    • 0842305469 scopus 로고
    • Some of the factors involved in the sexual reproduction of marchantia polymorpha
    • Wann FB. Some of the factors involved in the sexual reproduction of marchantia polymorpha. Am J Bot 1925, 12(6):307-318.
    • (1925) Am J Bot , vol.12 , Issue.6 , pp. 307-318
    • Wann, F.B.1
  • 99
    • 0031081131 scopus 로고    scopus 로고
    • MYB transcription factors in plants
    • 10.1016/S0168-9525(96)10049-4, 9055608
    • Martin C, Paz-Ares J. MYB transcription factors in plants. Trends Genet 1997, 13(2):67-73. 10.1016/S0168-9525(96)10049-4, 9055608.
    • (1997) Trends Genet , vol.13 , Issue.2 , pp. 67-73
    • Martin, C.1    Paz-Ares, J.2
  • 100
    • 0028940289 scopus 로고
    • Molecular evolution of flower development: diversification of the plant MADS-box regulatory gene family
    • 1206560, 7635298
    • Purugganan MD, Rounsley SD, Schmidt RJ, Yanofsky MF. Molecular evolution of flower development: diversification of the plant MADS-box regulatory gene family. Genetics 1995, 140(1):345-356. 1206560, 7635298.
    • (1995) Genetics , vol.140 , Issue.1 , pp. 345-356
    • Purugganan, M.D.1    Rounsley, S.D.2    Schmidt, R.J.3    Yanofsky, M.F.4
  • 102
    • 0038031605 scopus 로고    scopus 로고
    • Phylogenetic analysis of plant basic helix-loop-helix proteins
    • 10.1007/s00239-002-2449-3, 12911037
    • Buck MJ, Atchley WR. Phylogenetic analysis of plant basic helix-loop-helix proteins. J Mol Evol 2003, 56(6):742-750. 10.1007/s00239-002-2449-3, 12911037.
    • (2003) J Mol Evol , vol.56 , Issue.6 , pp. 742-750
    • Buck, M.J.1    Atchley, W.R.2
  • 103
    • 0034192491 scopus 로고    scopus 로고
    • The WRKY superfamily of plant transcription factors
    • 10.1016/S1360-1385(00)01600-9, 10785665
    • Eulgem T, Rushton PJ, Robatzek S, Somssich IE. The WRKY superfamily of plant transcription factors. Trends Plant Sci 2000, 5(5):199-206. 10.1016/S1360-1385(00)01600-9, 10785665.
    • (2000) Trends Plant Sci , vol.5 , Issue.5 , pp. 199-206
    • Eulgem, T.1    Rushton, P.J.2    Robatzek, S.3    Somssich, I.E.4
  • 104
    • 0031845074 scopus 로고    scopus 로고
    • The AP2/EREBP family of plant transcription factors
    • Riechmann JL, Meyerowitz EM. The AP2/EREBP family of plant transcription factors. Biol Chem 1998, 379(6):633-646.
    • (1998) Biol Chem , vol.379 , Issue.6 , pp. 633-646
    • Riechmann, J.L.1    Meyerowitz, E.M.2
  • 105
    • 0033627609 scopus 로고    scopus 로고
    • The homeodomain: an ancient evolutionary motif in animals and plants
    • Kappen C. The homeodomain: an ancient evolutionary motif in animals and plants. Comput Chem 2000, 24(1):95-103.
    • (2000) Comput Chem , vol.24 , Issue.1 , pp. 95-103
    • Kappen, C.1
  • 106
    • 30944452960 scopus 로고    scopus 로고
    • The PHD finger, a nuclear protein-interaction domain
    • 10.1016/j.tibs.2005.11.001, 16297627
    • Bienz M. The PHD finger, a nuclear protein-interaction domain. Trends Biochem Sci 2006, 31(1):35-40. 10.1016/j.tibs.2005.11.001, 16297627.
    • (2006) Trends Biochem Sci , vol.31 , Issue.1 , pp. 35-40
    • Bienz, M.1
  • 107
    • 0037309997 scopus 로고    scopus 로고
    • Structure of SET domain proteins: a new twist on histone methylation
    • 10.1016/S0968-0004(03)00007-0, 12575990
    • Marmorstein R. Structure of SET domain proteins: a new twist on histone methylation. Trends Biochem Sci 2003, 28(2):59-62. 10.1016/S0968-0004(03)00007-0, 12575990.
    • (2003) Trends Biochem Sci , vol.28 , Issue.2 , pp. 59-62
    • Marmorstein, R.1
  • 109
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • 10.1186/gb-2009-10-3-r25, 2690996, 19261174
    • Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009, 10(3):R25. 10.1186/gb-2009-10-3-r25, 2690996, 19261174.
    • (2009) Genome Biol , vol.10 , Issue.3
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 110
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • 10.1038/nmeth.1226, 18516045
    • Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 2008, 5(7):621-628. 10.1038/nmeth.1226, 18516045.
    • (2008) Nat Methods , vol.5 , Issue.7 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5


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