Structural properties of gp41 fusion peptide at a model membrane interface

Journal of Physical Chemistry B

Volumn 117, Issue 49, 2013, Pages 15527-15535

  Volkov, V ^a   Bonn, M ^a  

^a MAX PLANCK INSTITUTE FOR POLYMER RESEARCH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BROWNIAN OSCILLATORS; INFRARED TRANSITION; MEMBRANE INTERFACE; ORIENTATION ANGLES; PHOSPHOLIPID MONOLAYERS; SECONDARY STRUCTURES; STRUCTURE AND ORIENTATION; SUM FREQUENCY GENERATION;

AMIDES; AMINO ACIDS; MONOLAYERS; PHOSPHOLIPIDS;

PROTEINS;

GLYCOPROTEIN GP 41; PEPTIDE;

ARTICLE; CELL MEMBRANE; CHEMICAL STRUCTURE; CHEMISTRY; HUMAN; METABOLISM;

CELL MEMBRANE; HIV ENVELOPE PROTEIN GP41; HUMANS; MODELS, MOLECULAR; PEPTIDES;

EID: 84890475684     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp405852r     Document Type: Article

References (62)

1. Willey, R.; Bonifacino, J.; Potts, B.; Martin, M.; Klausner, R. Biosynthesis, cleavage, and degradation of the human immunodeficiency virus 1 envelope glycoprotein gpl60 Proc. Natl. Acad. Sci. U.S.A. 1988, 85, 9580-9584
2. Wu, H.; Kwong, P.; Hendrickson, W. Dimeric association and segmental variability in the structure of human CD4 Nature 1997, 387, 527-530
3. Moore, J. Coreceptors: Implications for HIV pathogenesis and therapy Science 1997, 276, 51-52
4. Wyatt, R.; Sodroski, J. The HIV-1 envelope glycoproteins: fusogens, antigens, and immunogens Science 1998, 280, 1884-1888
5. Koshiba, T.; Chan, D. C. The prefusogenic intermediate of HIV-1 gp41 contains exposed C-peptide regions J. Biol. Chem. 2003, 278, 7573-7579
6. Skehel, J.; Wiley, D. Coiled coils in both intracellular vesicle and viral membrane fusion Cell 1998, 95, 871-874
7. Bomselsend, M.; Tudor, D.; Drillet, A.-S.; Alfsen, A.; Ganor, Y.; Roger, M.-G. Immunity 2011, 34, 269-280
8. Muga, A.; Neugebauer, W.; Hirama, T.; Surewicz, W. Membrane interaction and conformational properties of the putative fusion peptide of PH-30, a protein active in sperm-egg fusion Biochemistry 1994, 33, 4444-4448
9. Brasseur, R.; Vandenbranden, M.; Cornet, B.; Burny, A.; Ruysschaert, J.-M. Orientation into the lipid bilayer of an asymmetric amphipathic helical peptide located at the N-terminus of viral fusion protein Biochim. Biophys. Acta 1990, 1029, 267-273
10. 13C-enhanced Fourier transform infrared spectroscopy Biochim. Biophys. Acta 2002, 1559, 96-120
11. Jaroniec, C.; Kaufman, J.; Stahl, S.; Viard, M.; Blumenthal, R.; Wingfield, P.; Bax, A. Structure and dynamics of micelle-associated human immunodeficiency virus gp41 fusion domain Biochemistry 2005, 44, 16167-16180
12. Li, Y.; Tamm, L. Structure and plasticity of the human immunodeficiency virus gp41 fusion domain in lipid micelles and bilayers Biophys. J. 2007, 93, 876-885
13. Mobley, P.; Waring, A.; Sherman, M.; Gordon, L. Membrane interactions of the synthetic N-terminal peptide of HIV-1 gp41 and its structural analogs Biochim. Biophys. Acta 1999, 1418, 1-18
14. Schmick, S.; Weliky, D. Major antiparallel and minor parallel β sheet populations detected in the membrane-associated human immunodeficiency virus fusion peptide Biochemistry 2010, 49, 10623-10635
15. Rafalski, M.; Lear, J.; DeGrado, W. Phospholipid interactions of synthetic peptides representing the N-terminus of HIV gp41 Biochemistry 1990, 29, 7917-7922
16. Slepushkin, V.; Melikyan, G.; Sidorova, M.; Chumakov, V.; Andreev, S.; Manukyan, R.; Karamov, E. Interaction of human immunodeficiency virus (HIV1) fusion peptides with artificial lipid membranes Biochem. Biophys. Res. Commun. 1990, 172, 952-957
17. Martin, I.; Defrise-Quertain, F.; Decroly, E.; Vandenbranden, M.; Brasseur, R.; Ruysschaert, J. Orientation and structure of the NH2-terminal HIV-1 gp41 peptide in fused and aggregated liposomes Biochim. Biophys. Acta 1993, 1145, 124-133
18. Nieva, J.; Nir, S.; Muga, A.; Goni, F.; Wilschut, J. Interaction of the HIV-1 fusion peptide with phospholipid vesicles: Different structural requirements for fusion and leakage Biochemistry 1994, 33, 3201-3209
19. Terletskaya, Y.; Trikash, I.; Serdyuk, E.; Andreev, S. Fusion of negatively charged liposomes induced by peptides of the N-terminal fragment of HIV-1 transmembrane protein Biochemistry (Mosc.) 1995, 60, 1309-1314
20. Pereira, F.; Goni, F.; Muga, A.; Nieva, J. Permeabilization and fusion of uncharged lipid vesicles induced by the HIV-1 fusion peptide adopting an extended conformation: Dose and sequence effects Biophys. J. 1997, 73, 1977-1986
21. Martin, I.; Schaal, H.; Scheid, A.; Ruysschaert, J. Lipid membrane fusion induced by the human immunodeficiency virus type 1 gp41 N-terminal extremity is determined by its orientation in the lipid bilayer J. Virol. 1996, 70, 298-304
22. Kliger, Y.; Aharoni, A.; Rapaport, D.; Jones, P.; Blumenthal, R.; Shai, Y. Fusion peptides derived from the HIV type 1 glycoprotein 41 associate within phospholipid membranes and inhibit cell-cell fusion. Structure-function study J. Biol. Chem. 1997, 272, 13496-13505
23. Peisajovich, S.; Epand, R.; Pritsker, M.; Shai, Y.; Epand, R. The polar region consecutive to the HIV fusion peptide participates in membrane fusion Biochemistry 2000, 39, 1826-1833
24. Chang, D.; Cheng, S.; Chien, W. The amino-terminal fusion domain peptide of human immunodeficiency virus type 1 gp41 inserts into the sodium dodecyl sulfate micelle primarily as a helix with a conserved glycine at the micelle-water interface J. Virol. 1997, 71, 6593-6602
25. Vidal, P.; Chaloin, L.; Heitz, A.; Van Mau, N.; Mery, J.; Divita, G.; Heitz, F. Interactions of primary amphipathic vector peptides with membranes. Conformational consequences and influence on cellular localization J. Membr. Biol. 1998, 162, 259-264
26. Waring, A.; Mobley, P.; Gordon, L. Conformational mapping of a viral fusion peptide in structure-promoting solvents using circular dichroism and electrospray mass spectrometry Proteins: Struct., Funct., Genet. 1998, Suppl. 2, 38-49
27. Curtain, C.; Separovic, F.; Nielsen, K.; Craik, D.; Zhong, Y.; Kirkpatrick, A. The interactions of the N-terminal fusogenic peptide of HIV-1 gp41 with neutral phospholipids Eur. Biophys. J. 1999, 76, 3167-3175
28. Schwarz, G.; Taylor, S. Polymorphism and interactions of a viral fusion peptide in a compressed lipid monolayer Biophys. J. 1999, 76, 3167-3175
29. Saez-Cirion, A.; Nieva, J. L. Conformational transitions of membrane-bound HIV-1 fusion peptide Biochim. Biophys. Acta 2002, 1564, 57-65
30. Gordon, L.; Curtain, C.; Zhong, Y.; Kirkpatrick, A.; Mobley, P.; Waring, A. The amino-terminal peptide of HIV-1 glycoprotein 41 interacts with human erythrocyte membranes: Peptide conformation, orientation and aggregation Biochim. Biophys. Acta 1992, 1139, 257-274
31. Watry, M.; Tarbuck, T.; Richmond, G. Vibrational sum frequency studies of a series of phospholipid monolayers and the associated water structure at the vapor/water interface J. Phys. Chem. B 2003, 107, 512-518
32. Roke, S.; Schins, J.; Mueller, M.; Bonn, M. Vibrational spectroscopic investigation of the phase diagram of a biomimetic lipid monolayer Phys. Rev. Lett. 2003, 90, 128101/1-128101/4
33. Liu, J.; Conboy, J. Direct measurement of the transbilayer movement of phospholipids by sum-frequency vibrational spectroscopy J. Am. Chem. Soc. 2004, 126, 8376-8377
34. Kim, G.; Gurau, M.; Lim, S.; Cremer, P. Investigations of the orientation of a membrane peptide by sum frequency spectroscopy J. Phys. Chem. B 2003, 107, 1403-1409
35. Chen, X.; Wang, J.; Kristalyn, C.; Chen, Z. Real-time structural investigation of a lipid bilayer during its interaction with melittin using sum frequency generation vibrational spectroscopy Biophys. J. 2007, 93, 866-875
36. Ghosh, A.; Smits, M.; Bredenbeck, J.; Bonn, M. Membrane-bound water is energetically decoupled from nearby bulk water: An ultrafast surface-specific investigation J. Am. Chem. Soc. 2007, 129, 9608-9609
37. Sovago, M.; Vartiainen, E.; Bonn, M. Determining absolute molecular orientation at interfaces: A phase retrieval approach for sum frequency generation spectroscopy J. Phys. Chem. C 2009, 113, 6100-6106
38. Allen, H.; Casillas-Ituarte, N.; Sierra-Hernández, M.; Chen, X.; Tang, C. Shedding light on water structure at air-aqueous interfaces: Ions, lipids, and hydration Phys. Chem. Chem. Phys. 2009, 11, 5538-5549
39. Tong, Y.; Li, N.; Liu, H.; Ge, A.; Osawa, M.; Shen, Y. Mechanistic studies by sum-frequency generation spectroscopy: Hydrolysis of a supported phospholipid bilayer by phospholipase A2 Angew. Chem. 2010, 49, 2319-2323
40. Mondal, J.; Nihonyanagi, S.; Yamaguchi, S.; Tahara, T. Structure and orientation of water at charged lipid monolayer/water interfaces probed by heterodyne-detected vibrational sum frequency generation spectroscopy J. Am. Chem. Soc. 2010, 132, 10656-10657
41. Chen, X.; Hua, W.; Huang, Z.; Allen, H. Interfacial water structure associated with phospholipid membranes studied by phase-sensitive vibrational sum frequency generation spectroscopy J. Am. Chem. Soc. 2010, 132, 11336-11342
42. Kett, P.; Casford, M.; Davies, P. Structure of mixed phosphatidylethanolamine and cholesterol monolayers in a supported hybrid bilayer membrane studied by sum frequency generation vibrational spectroscopy J. Phys. Chem. B 2011, 115, 6465-6473
43. Fu, L.; Wang, Z.; Yan, E. Chiral vibrational structures of proteins at interfaces probed by sum frequency generation spectroscopy Int. J. Mol. Sci. 2011, 12, 9404-9425
44. Maker, P. Spectral broadening of elastic second-harmonic light scattering in liquids Phys. Rev. A 1970, 1, 923-951
45. Mukamel, S. Principles of Nonlinear Optical Spectroscopy; Oxford University Press, Inc.: New York, 1995.
46. Cho, M. Two-Dimensional Optical Spectroscopy; CRC Press: Boca Raton, FL, 2009.
47. Backus, E.; Bonn, D.; Cantin, S.; Toke, S.; Bonn, M. Laser-Heating- Induced Diplacement of Surfactants on the Water Surface J. Phys. Chem. B 2012, 116, 2703-2712
48. Frisch, M.; Trucks, G.; Schlegel, H.; Scuseria, G.; Robb, M.; Cheeseman, J. Gaussian 09, revision A.1; Gaussian, Inc.: Wallingford CT, 2009.
49. Nguyen, K.; Le Clair, S.; Ye, S.; Chen, Z. Orientation determination of protein helical secondary structures using linear and nonlinear vibrational spectroscopy J. Phys. Chem. B 2009, 113, 12169-12180
50. Yang, P.; Ramamoorthy, A.; Chen, Z. Membrane orientation of MSI-78 measured by sum frequency generation vibrational spectroscopy Langmuir 2011, 27, 7760-7767
51. Zhuang, X.; Miranda, P.; Kim, D.; Shen, Y. Mapping molecular orientation and conformation at interfaces by surface nonlinear optics Phys. Rev. B 1999, 59, 12632-12640
52. Dyson, F. The radiation theories of Tomonaga, Schwinger, and Feynman Phys. Rev. 1949, 75, 486-502
53. Morita, A.; Hynes, J. A theoretical analysis of the sum frequency generation spectrum of the water surface. II. Time-dependent approach J. Phys. Chem. B 2002, 106, 673-685
54. Auer, B.; Skinner, J. Vibrational sum-frequency spectroscopy of the water liquid/vapor interface J. Phys. Chem. B 2009, 113, 4125-4130
55. Pieniazek, P.; Tainter, C.; Skinner, J. Interpretation of the water surface vibrational sum-frequency spectrum J. Chem. Phys. 2011, 135, 044701/1-044701/12
56. Simpson, G.; Perry, J.; Ashmore-Good, C. Molecular and surface hyperpolarizability of oriented chromophores of low symmetry Phys. Rev. B 2002, 66, 165437/1-165437/10
57. Kamath, S.; Wong, T. Membrane structure of the human immunodeficiency virus gp41 fusion domain by molecular dynamics simulation Biophys. J. 2002, 83, 135-143
58. Rijs, A.; Kabelac, M.; Abo-Riziq, A.; Hobza, P.; de Vries, M. Isolated gramicidin peptides probed by IR spectroscopy ChemPhysChem 2011, 12, 1816-1821
59. Krimm, S.; Abe, Y. Intermolecular interaction effects in the amide I vibrations of polypeptides Proc. Natl. Acad. Sci. U.S.A. 1972, 69, 2788-2792
60. Krim, S.; Bandeker, J. Vibrational analysis of peptides, polypeptides, and proteins. V. Normal vibrations of β-turns Biopolymers 1980, 19, 1-29
61. Mukherjee, P.; Krummel, A.; Fulmer, E.; Kass, I.; Arkin, I.; Zanni, M. Site-specific vibrational dynamics of the CD3ζ membrane peptide using heterodyned two-dimensional infrared photon echo spectroscopy J. Chem. Phys. 2004, 120, 10215-10224
62. Woutersen, S.; Pfister, R.; Hamm, P.; Mu, Y.; Kosov, D.; Stock, G. Peptide conformational heterogeneity revealed from nonlinear vibrational spectroscopy and molecular-dynamics simulations J. Chem. Phys. 2002, 117, 6833-6840