Site-specific vibrational dynamics of the CD3ζ membrane peptide using heterodyned two-dimensional infrared photon echo spectroscopy

Journal of Chemical Physics

Volumn 120, Issue 21, 2004, Pages 10215-10224

  Mukherjee, Prabuddha ^a   Krummel, Amber T ^a   Fulmer, Eric C ^a   Kass, Itamar ^b   Arkin, Isaiah T ^b   Zanni, Martin T ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b HEBREW UNIVERSITY OF JERUSALEM   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

FREQUENCY FLUCTUATIONS; LINEWIDTHS; TWO DIMENSIONAL INFRARED SPECTROSCOPY (2D IR); VIBRATIONAL DYNAMICS;

BIOLOGICAL MEMBRANES; DNA; FREQUENCIES; HETERODYNING; HYDROGEN BONDS; INFRARED SPECTROSCOPY; LIPIDS; MOLECULAR DYNAMICS; MOLECULAR STRUCTURE; NITROGEN COMPOUNDS; PHOTONS;

MOLECULAR VIBRATIONS;

CD3 ANTIGEN; CD3 ANTIGEN, ZETA CHAIN; LIPOSOME; MEMBRANE PROTEIN; PEPTIDE;

ARTICLE; CHEMICAL MODEL; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER SIMULATION; INFRARED SPECTROPHOTOMETRY; LIPID BILAYER; METHODOLOGY; PHOTON; PROTEIN CONFORMATION; VIBRATION;

ANTIGENS, CD3; COMPUTER SIMULATION; LIPID BILAYERS; LIPOSOMES; MEMBRANE PROTEINS; MODELS, CHEMICAL; MODELS, MOLECULAR; PEPTIDES; PHOTONS; PROTEIN CONFORMATION; SPECTROPHOTOMETRY, INFRARED; VIBRATION;

EID: 2942637980     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.1718332     Document Type: Article

References (49)

1. M. T. Zanni, N.-H. Ge, Y. S. Kim, and R. M. Hochstrasser, Proc. Natl. Acad. Sci. U.S.A. 98, 11265 (2001).
2. M. Khalil, N. Demirdöven, and A. Tokmakoff, J. Phys. Chem. A 107, 5258 (2003).
3. K. A. Meyer, D. M. Besemann, and J. C. Wright, Chem. Phys. Lett. 381, 642 (2003).
4. N.-H. Ge, M. T. Zanni, and R. M. Hochstrasser, in Ultrafast Phenomena XIII, edited by N. S. M. M. Murnane, R. J. D. Miller, and A. M. Weiner (Springer-Verlag, Berlin, 2004), p. 592.
5. S. Yeremenko, M. S. Pshenichnikov, and D. A. Wiersma, Chem. Phys. Lett. 369, 107 (2003).
6. J. B. Ashbury, T. Steinel, C. Stromberg, K. J. Gaffney, I. R. Piletic, A. Goun, and M. D. Payer, Chem. Phys. Lett. 374, 362 (2003).
7. C. J. Fecko, J. D. Eaves, J. J. Loparo, A. Tokmakoff, and P. L. Geissler, Science 301, 1698 (2003).
8. P. Hamm, M. Lim, and R. M. Hochstrasser, J. Phys. Chem. B 102, 6123 (1998).
9. M. T. Zanni, S. Gnanakaran, J. Stenger, and R. M. Hochstrasser, J. Phys. Chem. B 105, 6520 (2001).
10. S. Woutersen and P. Hamm, J. Chem. Phys. 115, 7737 (2001).
11. M. T. Zanni and R. M. Hochstrasser, Curr. Opin. Struct. Biol. 11, 516 (2001).
12. C. Fang, J. Wang, A. K. Chamley, W. Barber-Armstrong, A. B. Smith III, S. M. Decatur, and R. M. Hochstrasser, Chem. Phys. Lett. 382, 586 (2003).
13. A. T. Krummel, P. Mukherjee, and M. T. Zanni, J. Phys. Chem. B 107, 9165 (2003).
14. A. Piryatinski, S. Tretiak, V. Chernyak, and S. Mukamel, J. Raman Spectrosc. 31, 125 (2000).
15. O. Golonzka, M. Khalil, N. Demirdöven, and A. Tokmakoff, Phys. Rev. Lett. 86, 2154 (2001).
16. E. C. Fulmer, P. Mukherjee, A. T. Krummel, and M. T. Zanni, J. Chem. Phys. 120, 8067 (2004).
17. A. Tokmakoff, J. Phys. Chem. A 104, 4247 (2000).
18. M. T. Zanni, M. C. Asplund, and R. M. Hochstrasser, J. Chem. Phys. 114, 4579 (2001).
19. S. Ham, J.-H. Kim, H. Lee, and M. Cho, J. Chem. Phys. 118, 3491 (2003).
20. D. E. Thompson, K. A. Merchant, and M. D. Fayer, J. Chem. Phys. 115, 317 (2001).
21. N.-H. Ge, M. T. Zanni, and R. M. Hochstrasser, J. Phys. Chem. A106, 962 (2002).
22. N. Demirdoven, M. Khalil, and A. Tokmakoff, Phys. Rev. Lett. 89, 237401/1 (2002).
23. R. Venkatramani and S. Mukamel, J. Chem. Phys. 117, 11089 (2002).
24. R. Kubo, Adv. Chem. Phys. 15, 101 (1969).
25. J. Chesnoy and G. M. Gale, Adv. Chem. Phys. 70, 297 (1988).
26. S. Mukamel, Principles of Nonlinear Spectroscopy (Oxford University Press, New York, 1995).
27. M. C. Asplund, M. T. Zanni, and R. M. Hochstrasser, Proc. Natl. Acad. Sci. U.S.A. 97, 8219 (2000).
28. P. Hamm, M. Lim, and R. M. Hochstrasser, Phys. Rev. Lett. 81, 5326 (1998).
29. K. D. Rector, C. W. Rella, J. R. Hill, A. S. Kwok, S. G. Sligar, E. Y. P. Chien, D. D. Dlott, and M. D. Fayer, J. Phys. Chem. B 101, 1468 (1997).
30. K. A. Merchant, Q.-H. Xu, D. E. Thompson, and M. D. Fayer, J. Phys. Chem. A 106, 8839 (2002).
31. M. Lim, P. Hamm, and R. M. Hochstrasser, Proc. Natl. Acad. Sci. U.S.A. 95, 15315 (1998).
32. P. Hamm, M. Lim, W. F. DeGrado, and R. M. Hochstrasser, J. Phys. Chem. A 103, 10049 (1999).
33. J. Torres, J. A. G. Briggs, and I. T. Arkin, J. Mol. Biol. 316, 365 (2002).
34. N. Manolios, Immunol. Cell Biol. 73, 544 (1995).
35. H. Jacobs, Immunol. Today 18, 565 (1997).
36. S. Krimm and J. Bandekar, Adv. Protein Chem. 38, 181 (1986).
37. T. Uzer and W. H. Miller, Phys. Rep. 199, 73 (1991).
38. H. Torii and M. Tasumi, J. Chem. Phys. 96, 3379 (1993).
39. H. Torii and M. Tasumi, J. Raman Spectrosc. 29, 81 (1997).
40. P. Hamm and S. Womersen, Bull. Chem. Soc. Jpn. 75, 985 (2002).
41. D. W. Oxtoby, D. Levesque, and J.-J. Weis, J. Chem. Phys. 68, 5528 (1978).
42. J. B. Asbury, T. Steinel, G. Stromberg, K. J. Gaffney, I. R. Piletic, A. Goun, and M. D. Fayer (unpublished).
43. M. Khalil, N. Demirdöven, and A. Tokmakoff, Phys. Rev. Lett. 90, 047401 (2003).
44. P. W. Higgs, Proc. R. Soc. London, Ser. A 220, 472 (1953).
45. W. Moffitt, J. Chem. Phys. 25, 467 (1956).
46. T. Miyazawa, J. Chem. Phys. 32, 1647 (1960).
47. J. L. Skinner, J. Phys. Chem. 98, 2503 (1994).
48. J. Edler and P. Hamm, J. Chem. Phys. 117, 2415 (2002).
49. J. R. Schmidt, N. Sundlass, J. L. Skinner, Chem. Phys. Lett. 378, 559 (2003).