Identification of dichloroacetic acid degrading Cupriavidus bacteria in a drinking water distribution network model

Journal of Applied Microbiology

Volumn 116, Issue 1, 2014, Pages 208-221

  Berthiaume, C ^a   Gilbert, Y ^a   Fournier Larente, J ^a,b   Pluchon, C ^b   Filion, G ^a,b   Jubinville, E ^a,b   Serodes J B ^b   Rodriguez, M ^b   Duchaine, C ^a,b   Charette, S J ^a,b  

^a LAVAL UNIVERSITY   (Canada)

^b UNIVERSITÉ LAVAL   (Canada)

Author keywords

Bacterial community; Biofilm; Cupriavidus; Drinking water; Haloacetic acid; Water distribution network

Indexed keywords

BACTERIA; BIODEGRADATION; BIOFILMS; ELECTROPHORESIS; TRICHLOROACETIC ACID; WATER DISTRIBUTION SYSTEMS;

ACID DEGRADATION; BACTERIAL COMMUNITY; BACTERIAL COMMUNITY COMPOSITION; BACTERIAL COMMUNITY STRUCTURE; CUPRIAVIDU; DENATURING GRADIENT GEL ELECTROPHORESIS; DRINKING WATER DISTRIBUTION NETWORKS; HALOACETIC ACIDS; WATER DISTRIBUTION NETWORK MODELS; WATER DISTRIBUTION NETWORKS;

POTABLE WATER;

DICHLOROACETIC ACID; DRINKING WATER; TRICHLOROACETIC ACID;

ACETIC ACID; BIODEGRADATION; BIOFILM; DRINKING WATER; EVOLUTIONARY BIOLOGY; MICROBIAL ACTIVITY; NUMERICAL MODEL; SAMPLING; SEASONAL VARIATION; SPECIES DIVERSITY;

ACTINOBACTERIA; ALPHAPROTEOBACTERIA; ARTICLE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; BACTEROIDETES; BETAPROTEOBACTERIA; BIOMASS; COMMUNITY STRUCTURE; CONTROLLED STUDY; CUPRIAVIDUS; DEGRADATION; DENATURING GRADIENT GEL ELECTROPHORESIS; DRINKING WATER DISTRIBUTION SYSTEM MODEL; FIRMICUTES; GAMMAPROTEOBACTERIA; MICROBIAL COMMUNITY; MICROBIAL DIVERSITY; MODEL; NUCLEOTIDE SEQUENCE; SIMULATION; SUMMER; WATER TEMPERATURE;

BACTERIA (MICROORGANISMS); CUPRIAVIDUS;

EID: 84890433657     PISSN: 13645072     EISSN: 13652672     Source Type: Journal    
DOI: 10.1111/jam.12353     Document Type: Article

References (44)

1. Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D.J. (1990) Basic local alignment search tool. J Mol Biol 215, 403-410.
2. Amadou, C., Pascal, G., Mangenot, S., Glew, M., Bontemps, C., Capela, D., Carrere, S., Cruveiller, S. et al. (2008) Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia. Genome Res 18, 1472-1483.
3. American Water Works Association (2003) Water Treatment. Principles and practices of Water Supply Operations Series - Water Supply Operations Training, 3rd edn. Denver, CO: American Water Works Association, pp. 552.
4. Andersson, S., Kuttuva Rajarao, G., Land, C.J. and Dalhammar, G. (2008) Biofilm formation and interactions of bacterial strains found in wastewater treatment systems. FEMS Microbiol Lett 283, 83-90.
5. Bai, X., Wu, F., Zhou, B. and Zhi, X. (2010) Biofilm bacterial communities and abundance in a full-scale drinking water distribution system in Shanghai. J Water Health 8, 593-600.
6. Bayless, W. and Andrews, R.C. (2008) Biodegradation of six haloacetic acids in drinking water. J Water Health 6, 15-22.
7. Cao, L., Liu, H., Zhang, H., Huang, K., Gu, T., Ni, H., Hong, Q. and Li, S. (2012) Characterization of a newly isolated highly effective 3, 5, 6-trichloro-2-pyridinol degrading strain Cupriavidus pauculus P2. Curr Microbiol 65, 231-236.
8. Costerton, J.W. (2007) The Biofilm Primer. Springer Series on Biofilms. Berlin: Springer, pp. 199.
9. Costerton, J.W., Lewandowski, Z., Caldwell, D.E., Korber, D.R. and Lappin-Scott, H.M. (1995) Microbial biofilms. Annu Rev Microbiol 49, 711-745.
10. Eichler, S., Christen, R., Holtje, C., Westphal, P., Botel, J., Brettar, I., Mehling, A. and Hofle, M.G. (2006) Composition and dynamics of bacterial communities of a drinking water supply system as assessed by RNA- and DNA-based 16S rRNA gene fingerprinting. Appl Environ Microbiol 72, 1858-1872.
11. Fetzner, S. (1998) Bacterial dehalogenation. Appl Microbiol Biotechnol 50, 633-657.
12. Fromin, N., Hamelin, J., Tarnawski, S., Roesti, D., Jourdain-Miserez, K., Forestier, N., Teyssier-Cuvelle, S., Gillet, F. et al. (2002) Statistical analysis of denaturing gel electrophoresis (DGE) fingerprinting patterns. Environ Microbiol 4, 634-643.
13. Goller, C.C. and Romeo, T. (2008) Environmental influences on biofilm development. Curr Top Microbiol Immunol 322, 37-66.
14. Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41, 95-98.
15. Hallam, N.B., West, J.R., Forster, C.F., Powell, J.C. and Spencer, I. (2002) The decay of chlorine associated with the pipe wall in water distribution systems. Water Res 36, 3479-3488.
16. Health Canada (2008) Guidelines for Canadian Drinking Water Quality: Guideline Technical Document - Haloacetic Acids. Ottawa, Canada: Health Canada, pp. 90.
17. Health Canada (2010) Guidelines for Canadian Drinking Water Quality-Summary Table. Ottawa, Canada: Health Canada, pp. 22.
18. Henne, K., Kahlisch, L., Brettar, I. and Hofle, M.G. (2012) Analysis of structure and composition of bacterial core communities in mature drinking water biofilms and bulk water of a citywide network in Germany. Appl Environ Microbiol 78, 3530-3538.
19. Hozalski, R.M., Zhang, L. and Arnold, W.A. (2001) Reduction of haloacetic acids by Fe0: implications for treatment and fate. Environ Sci Technol 35, 2258-2263.
20. Janssen, D.B., Scheper, A., Dijkhuizen, L. and Witholt, B. (1985) Degradation of halogenated aliphatic compounds by Xanthobacter autotrophicus GJ10. Appl Environ Microbiol 49, 673-677.
21. Liu, R., Yu, Z., Zhang, H., Yang, M., Shi, B. and Liu, X. (2012) Diversity of bacteria and mycobacteria in biofilms of two urban drinking water distribution systems. Can J Microbiol 58, 261-270.
22. Marchesi, J.R., Sato, T., Weightman, A.J., Martin, T.A., Fry, J.C., Hiom, S.J., Dymock, D. and Wade, W.G. (1998) Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA. Appl Environ Microbiol 64, 795-799.
23. Martiny, A.C., Jorgensen, T.M., Albrechtsen, H.J., Arvin, E. and Molin, S. (2003) Long-term succession of structure and diversity of a biofilm formed in a model drinking water distribution system. Appl Environ Microbiol 69, 6899-6907.
24. McBain, A.J. (2009) Chapter 4: in vitro biofilm models: an overview. Adv Appl Microbiol 69, 99-132.
25. McRae, B.M., LaPara, T.M. and Hozalski, R.M. (2004) Biodegradation of haloacetic acids by bacterial enrichment cultures. Chemosphere 55, 915-925.
26. Muyzer, G., de Waal, E.C. and Uitterlinden, A.G. (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59, 695-700.
27. Perez-Pantoja, D., De la Iglesia, R., Pieper, D.H. and Gonzalez, B. (2008) Metabolic reconstruction of aromatic compounds degradation from the genome of the amazing pollutant-degrading bacterium Cupriavidus necator JMP134. FEMS Microbiol Rev 32, 736-794.
28. Pluchon, C., Sérodes, J.-B., Berthiaume, C., Charette, S.J., Gilbert, Y., Filion, G., Fournier-Larente, J., Rodriguez, M.J. et al. (2013) Haloacetic acid degradation by a biofilm in a simulated drinking water distribution system. WST 13, 447-461.
29. Poehlein, A., Kusian, B., Friedrich, B., Daniel, R. and Bowien, B. (2011) Complete genome sequence of the type strain Cupriavidus necator N-1. J Bacteriol 193, 5017.
30. Revetta, R.P., Pemberton, A., Lamendella, R., Iker, B. and Santo Domingo, J.W. (2010) Identification of bacterial populations in drinking water using 16S rRNA-based sequence analyses. Water Res 44, 1353-1360.
31. Revetta, R.P., Matlib, R.S. and Santo Domingo, J.W. (2011) 16S rRNA gene sequence analysis of drinking water using RNA and DNA extracts as targets for clone library development. Curr Microbiol 63, 50-59.
32. Rodriguez, M.J., Serodes, J.B. and Levallois, P. (2004) Behavior of trihalomethanes and haloacetic acids in a drinking water distribution system. Water Res 38, 4367-4382.
33. Rook, J.J. (1974) Formation of haloforms during chlorination of naturals waters. Water Treat Exam 23, 234-243.
34. Schaule, G., Moschnitschka, D., Schulte, S., Tamachkiarow, A. and Flemming, H.C. (2007) Biofilm growth in response to various concentrations of biodegradable material in drinking water. Water Sci Technol 55, 191-195.
35. Serodes, J.B., Rodriguez, M.J., Li, H. and Bouchard, C. (2003) Occurrence of THMs and HAAs in experimental chlorinated waters of the Quebec City area (Canada). Chemosphere 51, 253-263.
36. Simard, A. (2008) Stratégies hydrauliques pour améliorer la qualité de l'eau potable en réseau de distribution. Master in science. Université Laval.
37. Simoes, L.C., Simoes, M. and Vieira, M.J. (2007) Biofilm interactions between distinct bacterial genera isolated from drinking water. Appl Environ Microbiol 73, 6192-6200.
38. Symons, J.M., T.A Bellar, T.A., Carswell, J.K., DeMarco, J., Krapp, K.L., Robeck, G.G., Seeger, D.R., Sloccum, C.J. et al. (1975) National organics reconnaissance survey for halogenated organics. J Am Water Works Assoc 67, 634-648.
39. Tung, H.H. and Xie, Y.F. (2009) Association between haloacetic acid degradation and heterotrophic bacteria in water distribution systems. Water Res 43, 971-978.
40. USEPA (1995) Method 552.2. Determination of haloacetic acids in drinking water by liquid liquid extraction and gas chromatography with electron capture detection.
41. Wang, W. and Zhu, L. (2010) Effect of zinc on the transformation of haloacetic acids (HAAs) in drinking water. J Hazard Mater 174, 40-46.
42. Yu, Z. and Morrison, M. (2004) Comparisons of different hypervariable regions of rrs genes for use in fingerprinting of microbial communities by PCR-denaturing gradient gel electrophoresis. Appl Environ Microbiol 70, 4800-4806.
43. Zhang, P., Lapara, T.M., Goslan, E.H., Xie, Y., Parsons, S.A. and Hozalski, R.M. (2009a) Biodegradation of haloacetic acids by bacterial isolates and enrichment cultures from drinking water systems. Environ Sci Technol 43, 3169-3175.
44. Zhang, P., Hozalski, R.M., Leach, L.H., Camper, A.K., Goslan, E.H., Parsons, S.A., Xie, Y.F. and LaPara, T.M. (2009b) Isolation and characterization of haloacetic acid-degrading Afipia spp. from drinking water. FEMS Microbiol Lett 297, 203-208.